CRAN Package Check Results for Package RTisean

Last updated on 2014-04-24 07:52:36.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0.14 1.06 15.37 16.43 NOTE
r-devel-linux-x86_64-debian-gcc 3.0.14 1.06 15.09 16.16 NOTE
r-devel-linux-x86_64-fedora-clang 3.0.14 30.36 NOTE
r-devel-linux-x86_64-fedora-gcc 3.0.14 29.34 NOTE
r-devel-osx-x86_64-clang 3.0.14 33.19 NOTE
r-devel-osx-x86_64-gcc 3.0.14 NOTE
r-devel-windows-ix86+x86_64 3.0.14 3.00 22.00 25.00 NOTE
r-patched-linux-x86_64 3.0.14 1.14 14.82 15.95 NOTE
r-patched-solaris-sparc 3.0.14 184.50 NOTE
r-patched-solaris-x86 3.0.14 54.80 NOTE
r-release-linux-ix86 3.0.14 2.00 31.00 33.00 NOTE
r-release-linux-x86_64 3.0.14 1.07 14.56 15.63 NOTE
r-release-osx-x86_64-mavericks 3.0.14 NOTE
r-release-windows-ix86+x86_64 3.0.14 8.00 31.00 39.00 NOTE
r-oldrel-windows-ix86+x86_64 3.0.14 4.00 24.00 28.00 NOTE

Check Details

Version: 3.0.14
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘tcltk’ which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.0.14
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
    
    .First.lib: warning in assign(".binlist", .binlist, env =
     as.environment("package:RTisean")): partial argument match of 'env'
     to 'envir'
    .loadPaths: warning in dir(usrdir, all = TRUE): partial argument match
     of 'all' to 'all.files'
    .loadPaths: warning in assign(".TISEANpath", path, env = .GlobalEnv):
     partial argument match of 'env' to 'envir'
    helpTISEAN: warning in assign(".TISEANdocs",
     as.character(tkchooseDirectory(title = "Please select TISEAN html
     docs directory")), env = .GlobalEnv): partial argument match of 'env'
     to 'envir'
    setTISEANdocs: warning in assign(".TISEANdocs", path, env =
     .GlobalEnv): partial argument match of 'env' to 'envir'
    .checkPath: no visible binding for global variable ‘.binlist’
    callNativeTISEAN: no visible binding for global variable ‘.TISEANpath’
    callTISEAN: no visible binding for global variable ‘.TISEANpath’
    helpTISEAN: no visible binding for global variable ‘.TISEANdocs’
    
    Found the following assignments to the global environment:
    File ‘RTisean/R/nativeTISEAN.R’:
     assign(".TISEANpath", path, env = .GlobalEnv)
     assign(".TISEANpath", path, env = .GlobalEnv)
     assign(".TISEANdocs", path, env = .GlobalEnv)
     assign(".TISEANdocs", as.character(tkchooseDirectory(title = "Please select TISEAN html docs directory")),
     env = .GlobalEnv)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 3.0.14
Check: Rd line widths
Result: NOTE
    Rd file 'c2t.Rd':
     \examples lines wider than 100 characters:
     ylab="Takens' Estimator",log="x", main="Maximum Likelihood Estimator Plot, embedding dims=(1,...,10)")
    
    Rd file 'd2.Rd':
     \usage lines wider than 90 characters:
     d2(series, l, x = 0, d = 1, M, c, t = 0, R, r, scale = 100, N = 1000, E = FALSE, pretty=FALSE)
    
    Rd file 'delay.Rd':
     \examples lines wider than 100 characters:
     plot(delayeddat,xlab="x(t)",ylab="x(t+1)", main="Logistic Model Delayed Chaotic Attractor",cex=0.6,col=2)
    
    Rd file 'lazy.Rd':
     \examples lines wider than 100 characters:
     plot(delayeddat, cex= 0.2, cex.main=0.7, xlab="", ylab="", main = "Embedded noisy Henon attractor filtered with lazy")
     plot(delayeddat, cex= 0.2, cex.main=0.7,xlab="", ylab="", main = "Embedded noisy Henon attractor filtered with nrlazy")
    
    Rd file 'lfo-ar.Rd':
     \examples lines wider than 100 characters:
     plot(ll_aroutput[,1],ll_aroutput[,3],xlab="Neighborhood size", ylab="Fraction of points with neighbors",t="l" )
     plot(ll_aroutput[,1],ll_aroutput[,4],xlab="Neighborhood size",ylab="Average number of neighbors",t="l")
     plot(ll_aroutput[,1],ll_aroutput[,5],xlab="Neighborhood size",ylab="Variance of points with neighbors",t="l")
    
    Rd file 'lfo-run.Rd':
     \examples lines wider than 100 characters:
     plot(abs(dat[951:1000][1:validiter]-nsteppred),t="l",xlim=c(1,50),xlab="Time",ylab="Distance from original time series")
    
    Rd file 'lfo-test.Rd':
     \examples lines wider than 100 characters:
     plot(errors,t="l",xlab="Forecasted steps", ylab="Relative error",main="Relative forecast error for a local linear fit")
    
    Rd file 'lzo-test.Rd':
     \examples lines wider than 100 characters:
     plot(zerotherr, t="l", xlab= "Steps", ylab= "Normalized error", main = "Zeroth order ansatz prediction errors")
    
    Rd file 'upo.Rd':
     \usage lines wider than 90 characters:
     upo(series, m = -1, r = -1, v = -1, p = 1, w = -1, W = -1, a = -1, s = -1, n = -1, l = -1, x = 0, c = 1,pretty=FALSE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.0.14
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
    
    .First.lib: warning in assign(".binlist", .binlist, env =
     as.environment("package:RTisean")): partial argument match of 'env'
     to 'envir'
    .loadPaths: warning in dir(usrdir, all = TRUE): partial argument match
     of 'all' to 'all.files'
    .loadPaths: warning in assign(".TISEANpath", path, env = .GlobalEnv):
     partial argument match of 'env' to 'envir'
    helpTISEAN: warning in assign(".TISEANdocs",
     as.character(tkchooseDirectory(title = "Please select TISEAN html
     docs directory")), env = .GlobalEnv): partial argument match of 'env'
     to 'envir'
    setTISEANdocs: warning in assign(".TISEANdocs", path, env =
     .GlobalEnv): partial argument match of 'env' to 'envir'
    .checkPath: no visible binding for global variable ‘.binlist’
    callNativeTISEAN: no visible binding for global variable ‘.TISEANpath’
    callTISEAN: no visible binding for global variable ‘.TISEANpath’
    helpTISEAN: no visible binding for global variable ‘.TISEANdocs’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.0.14
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘tseriesChaos’
Flavor: r-devel-osx-x86_64-gcc