CRAN Package Check Results for Package RandomFields

Last updated on 2014-07-24 19:49:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0.10 17.34 99.71 117.04 NOTE
r-devel-linux-x86_64-debian-gcc 3.0.10 25.91 98.14 124.06 NOTE
r-devel-linux-x86_64-fedora-clang 3.0.10 241.97 NOTE
r-devel-linux-x86_64-fedora-gcc 3.0.10 145.21 NOTE
r-devel-osx-x86_64-clang 3.0.10 199.02 NOTE
r-devel-windows-ix86+x86_64 3.0.10 106.00 140.00 246.00 ERROR
r-patched-linux-x86_64 3.0.10 25.67 98.30 123.97 NOTE
r-patched-solaris-sparc 3.0.10 1482.50 NOTE
r-patched-solaris-x86 3.0.10 333.60 NOTE
r-release-linux-ix86 3.0.10 34.26 121.90 156.16 NOTE
r-release-linux-x86_64 3.0.10 26.06 102.14 128.21 NOTE
r-release-osx-x86_64-mavericks 3.0.10 NOTE
r-release-osx-x86_64-snowleopard 3.0.10 OK
r-release-windows-ix86+x86_64 3.0.10 100.00 131.00 231.00 ERROR
r-oldrel-windows-ix86+x86_64 3.0.10 103.00 139.00 242.00 ERROR

Memtest notes: UBSAN valgrind

Check Details

Version: 3.0.10
Check: foreign function calls
Result: NOTE
    Calls with DUP = FALSE:
     .C("MultiDimRange", as.integer(model.nr), natsc, DUP = FALSE,
     PACKAGE = "RandomFields")
     .C("countelements", cumidx, n, elms.in.boxes, DUP = FALSE, PACKAGE = "RandomFields")
     .C("countneighbours", ts.xdim, parts, locfactor, Ccumparts, elms.in.boxes,
     neighbours, OK, DUP = FALSE, PACKAGE = "RandomFields")
     .C("countelements", i, nrow(all$x), res.in.boxes, DUP = FALSE,
     PACKAGE = "RandomFields")
     .C("UserGetNatScaling", natscl, PACKAGE = "RandomFields", DUP = FALSE)
     .C("GetMaxDims", maxints, DUP = FALSE, PACKAGE = "RandomFields")
     .C("PutValuesAtNA", Reg, trafo(var), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("PutValuesAtNA", Reg, trafo(var), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("fftVario3D", as.double(new$x), as.double(sumvals), as.double(nbvals),
     as.double(bin), as.integer(n.bins), as.integer(T[3]), as.integer(stepT),
     as.integer(nstepT), as.double(c(phi[1], phi[2])), as.double(c(theta[1],
     theta[2])), as.integer(repetitions), emp.vario, n.bin,
     pseudo, PACKAGE = "RandomFields", DUP = FALSE)
     .C("empiricalvariogram", as.double(new$x), as.integer(new$spacedim),
     as.integer(new$l), as.double(data), as.integer(repetitions),
     as.integer(new$grid), as.double(bin), as.integer(n.bins),
     as.integer(0), emp.vario, emp.vario.sd, n.bin, PACKAGE = "RandomFields",
     NAOK = TRUE, DUP = FALSE)
     .C("empvarioXT", as.double(new$x), as.double(T), as.integer(new$l),
     as.double(data), as.integer(repetitions), as.integer(new$grid),
     as.double(bin), as.integer(n.bins), as.double(c(phi[1], phi[2])),
     as.double(c(theta[1], theta[2])), as.integer(deltaT), emp.vario,
     emp.vario.sd, n.bin, PACKAGE = "RandomFields", NAOK = TRUE,
     DUP = FALSE)
     .C("minmax", as.double(data), as.integer(dimen[1]), as.integer(repet),
     as.integer(range.sequ), as.integer(lrs), l.range.count, PACKAGE = "RandomFields",
     DUP = FALSE, NAOK = TRUE)
     .C("boxcounting", as.double(rbind(data[1, ], data, data[nrow(data),
     ])), as.integer(dimen[1]), as.integer(repet), as.double(factor),
     as.integer(box.sequ), as.integer(length(box.sequ)), l.box.count,
     PACKAGE = "RandomFields", DUP = FALSE)
     .C("periodogram", data, as.integer(dimen[1]), as.integer(repet),
     as.integer(fft.m), as.integer(fft.len), as.integer(fft.len/100 *
     fft.shift), l.I.lambda, PACKAGE = "RandomFields", DUP = FALSE)
     .C("periodogram", data, as.integer(dimen[1]), as.integer(repet),
     as.integer(fft.m), as.integer(fft.len), as.integer(fft.len/2),
     l.I.lambda, PACKAGE = "RandomFields", DUP = FALSE)
     .C("detrendedfluc", as.double(data), as.integer(dimen[1]), as.integer(repet),
     as.integer(block.sequ), as.integer(dfa.len), l.dfa.var, l.varmeth.var,
     PACKAGE = "RandomFields", DUP = FALSE)
     .C("Ordering", given, Ngiven, ts.xdim, pos, PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("poly_basis_extern", ts.xdim, as.integer(polydeg), powers,
     PACKAGE = "RandomFields", DUP = FALSE)
     .C("distInt", t(x), n, genes, res, PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("PutValuesAtNA", Reg, trafo(guess), PACKAGE = "RandomFields",
     DUP = FALSE, NAOK = TRUE)
     .C("PutValuesAtNA", Reg, trafo(guess), PACKAGE = "RandomFields",
     DUP = FALSE, NAOK = TRUE)
     .C("PutValuesAtNA", Reg, trafo(lower), PACKAGE = "RandomFields",
     DUP = FALSE, NAOK = TRUE)
     .C("PutValuesAtNA", Reg, trafo(upper), PACKAGE = "RandomFields",
     DUP = FALSE, NAOK = TRUE)
     .Call("EvaluateModel", as.double(n), as.integer(reg), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("GetAttr", type, operator, normalmix, finiterange, internal,
     domains, isos, maxdim, vdim, DUP = FALSE, PACKAGE = "RandomFields")
     .C("GetModelList", idx, as.integer(TRUE), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("PutValuesAtNA", Reg, param, PACKAGE = "RandomFields", DUP = FALSE)
     .C("PutValuesAtNA", Reg, param, PACKAGE = "RandomFields", DUP = FALSE)
     .C("PutValuesAtNA", Reg, as.double((1:nrow(minmax)) * 1.11),
     PACKAGE = "RandomFields", DUP = FALSE, NAOK = TRUE)
     .C("vectordist", as.double(coord[[i]][, coord.idx]), as.integer(c(ts.xdim,
     size)), d, as.integer(FALSE), PACKAGE = "RandomFields", DUP = FALSE)
     .C("PutValuesAtNA", Reg, users.guess, PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("PutValuesAtNA", Reg, trafo(autostart), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("PutValuesAtNA", Reg, as.double(new.lower.vector), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("PutValuesAtNA", Reg, as.double(new.upper.vector), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("PutValuesAtNA", Reg, guess, PACKAGE = "RandomFields", DUP = FALSE,
     NAOK = TRUE)
     .C("PutValuesAtNA", Reg, as.double(param.table[idx, i]), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("PutValuesAtNA", Reg, as.double(lower), PACKAGE = "RandomFields",
     DUP = FALSE, NAOK = TRUE)
     .C("PutValuesAtNA", Reg, as.double(upper), PACKAGE = "RandomFields",
     DUP = FALSE, NAOK = TRUE)
     .C("PutValuesAtNA", Reg, param, PACKAGE = "RandomFields", DUP = FALSE)
     .C("expliciteDollarMLE", Reg, param, PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("GetNrParameters", selModelNum, k = integer(1), PACKAGE = "RandomFields",
     DUP = FALSE)
     .C("vectordist", as.double(t(x)), rev(dim(x)), res, diag, DUP = FALSE)
    DUP = FALSE is deprecated and may be disabled in future versions of R.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 3.0.10
Check: running examples for arch 'i386'
Result: ERROR
    Running examples in 'RandomFields-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: RMcauchy
    > ### Title: Cauchy Family Covariance Model
    > ### Aliases: RMcauchy
    > ### Keywords: spatial models
    >
    > ### ** Examples
    >
    > RFoptions(seed=0)
    > model <- RMcauchy(gamma=1)
    > x <- seq(0, 10, if (interactive()) 0.02 else 1)
    > plot(model, ylim=c(0,1))
    > plot(RFsimulate(model, x=x, pri=8))
    
    RFSimulate:
    #[NULL -> RFSimulate] (0 5):
    [single variable]; [cartesian system] sys=5,5
    . RMcauchy:
    . #[RFSimulate -> RMcauchy] (1 4):
    . [single variable]; [isotropic] sys=4,0
    . Back to `RMcauchy' (no error):
    . leaving 'RMcauchy' for 'RFSimulate' err=0 deriv=2,2
    RFSimulate: end look MERR: error code 0 [none]
    Back to `RFSimulate' (no error):
    leaving 'RFSimulate' for 'none' err=0 deriv=0,0
    . RPgauss:
    . #[RFSimulate -> RPgauss] (0 5):
    . [single variable]; [cartesian system] sys=5,5
    . . RMcauchy:
    . . #[RPgauss -> RMcauchy] (0 4):
    . . [single variable]; [isotropic] sys=4,0
    . . Back to `RMcauchy' (no error):
    . . leaving 'RMcauchy' for 'RPgauss' err=0 deriv=2,2
    . Back to `RPgauss' (no error):
    . leaving 'RPgauss' for 'RFSimulate' err=0 deriv=0,0
    .
    . circulant : covprev=0 locpref= 13 totpref= 39
    . cutoff : covprev=0 locpref= 11 totpref=-10004
    . intrinsic : covprev=0 locpref= 12 totpref=-10004
    . tbm : covprev=0 locpref= -17 totpref= 22
    . spectral : covprev=0 locpref= 10 totpref=-10004
    . direct : covprev=0 locpref= 8 totpref= 60
    . sequential : covprev=0 locpref= 6 totpref=-10004
    . markov : covprev=0 locpref= 5 totpref=-10004
    . average : covprev=0 locpref= 4 totpref=-10004
    . nugget : covprev=0 locpref= 3 totpref=-10004
    . coins : covprev=0 locpref= 2 totpref=-10004
    . hyperplane : covprev=0 locpref= 1 totpref=-10004
    . specific : covprev=0 locpref= 7 totpref=-10004
    . initstandard cauchy (25) [pref value 60]
    . direct : pref=60
    . . RPdirect:
    . . #[RPgauss -> RPdirect] (0 5):
    . . [single variable]; [cartesian system] sys=5,5
    . . . RMcauchy:
    . . . #[RPdirect -> RMcauchy] (1 4):
    . . . [single variable]; [isotropic] sys=4,0
    . . . Back to `RMcauchy' (no error):
    . . . leaving 'RMcauchy' for 'RPdirect' err=0 deriv=2,2
    . . Back to `RPdirect' (no error):
    . . leaving 'RPdirect' for 'RPgauss' err=0 deriv=0,0
    . . RPdirect:
    . . #[RPgauss -> RPdirect] (0 5):
    . . [single variable]; [cartesian system] sys=5,5
    . . . RMcauchy:
    . . . #[RPdirect -> RMcauchy] (1 4):
    . . . [single variable]; [isotropic] sys=4,0
    . . . Back to `RMcauchy' (no error):
    . . . leaving 'RMcauchy' for 'RPdirect' err=0 deriv=2,2
    . . Back to `RPdirect' (no error):
    . . leaving 'RPdirect' for 'RPgauss' err=0 deriv=0,0
    . . method to the root=Cholesky
    . returning to higher level...
    . . RMcauchy:
    . . #[RPgauss -> RMcauchy] (1 4):
    . . [single variable]; [isotropic] sys=4,0
    . . Back to `RMcauchy' (no error):
    . . leaving 'RMcauchy' for 'RPgauss' err=0 deriv=2,2
    
    (PMI 'simu.cc', line 854)
     *** ****** RFSimulate ****** [122,914]
    param none
    internal-q [2] 11.000000 1.000000
    calling NULL
    gatter -----# (7)
    domprev/own 0/0 (single variable/single variable)
    isoprev/own 5/5 (cartesian system/cartesian system)
    ts-x-v-dim 1, 1:1, 1/1/1
    maxdim 2147483647
    type interface (10)
    role <none> (0)
    method forbidden
    initialised false
    fieldret true
    origrf false
    rf 0
    pref cir:0 cut:0 int:0 tbm:0 spe:0 dir:0 seq:0
     mar:0 ave:0 nug:0 coi:0 hyp:0 spe:0 any:0
    mpp:maxhgt inf
    mpp:M+ not initialized yet (size=-4)
    mpp:M not initialized yet (size=-4)
    mpp:log false
    mpplgnonst false
    mpp:do true
    loc:extern (0)
    loc:ts,sp,xdimOZ 1 1 1
    loc:length 11
    loc:lx 3
    loc:totpts 11
    loc:grid true
    loc:dist false
    loc:Time false
    loc:
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64