CRAN Package Check Results for Package RbioRXN

Last updated on 2017-08-19 16:46:41.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5.1 5.60 72.32 77.92 NOTE
r-devel-linux-x86_64-debian-gcc 1.5.1 5.41 70.94 76.35 NOTE
r-devel-linux-x86_64-fedora-clang 1.5.1 148.62 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5.1 157.70 NOTE
r-devel-windows-ix86+x86_64 1.5.1 25.00 137.00 162.00 ERROR
r-patched-linux-x86_64 1.5.1 7.75 75.18 82.93 NOTE
r-patched-solaris-x86 1.5.1 195.40 NOTE
r-release-linux-x86_64 1.5.1 5.54 71.70 77.23 NOTE
r-release-windows-ix86+x86_64 1.5.1 25.00 142.00 167.00 ERROR
r-release-osx-x86_64 1.5.1 ERROR
r-oldrel-windows-ix86+x86_64 1.5.1 15.00 196.00 211.00 ERROR
r-oldrel-osx-x86_64 1.5.1 NOTE

Check Details

Version: 1.5.1
Check: R code for possible problems
Result: NOTE
    .parse.rhea: no visible global function definition for ‘tail’
    get.chebi.all: no visible global function definition for
     ‘download.file’
    get.chebi.all: no visible global function definition for ‘read.delim’
    get.rhea.all: no visible global function definition for ‘download.file’
    get.unipathway.all: no visible global function definition for
     ‘download.file’
    Undefined global functions or variables:
     download.file read.delim tail
    Consider adding
     importFrom("utils", "download.file", "read.delim", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.5.1
Check: examples
Result: ERROR
    Running examples in 'RbioRXN-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: parse.metacyc.reaction
    > ### Title: Parse MetaCyc reaction data (reactions.dat in attribute-value
    > ### format)
    > ### Aliases: parse.metacyc.reaction
    > ### Keywords: MetaCyc
    >
    > ### ** Examples
    >
    > url = "http://bioinformatics.ai.sri.com/ptools/flatfile-samples/reactions.dat"
    > tmpdest = tempfile(pattern = "reactions")
    > download.file(url, destfile=tmpdest)
    trying URL 'http://bioinformatics.ai.sri.com/ptools/flatfile-samples/reactions.dat'
    Warning in download.file(url, destfile = tmpdest) :
     InternetOpenUrl failed: 'Der Servername oder die Serveradresse konnte nicht verarbeitet werden.'
    Error in download.file(url, destfile = tmpdest) :
     cannot open URL 'http://bioinformatics.ai.sri.com/ptools/flatfile-samples/reactions.dat'
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5.1
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘fmcsR’ ‘ChemmineR’ ‘KEGGREST’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64