CRAN Package Check Results for Package RbioRXN

Last updated on 2016-07-27 12:50:44.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5.1 6.68 80.24 86.92 NOTE
r-devel-linux-x86_64-debian-gcc 1.5.1 6.56 78.54 85.10 NOTE
r-devel-linux-x86_64-fedora-clang 1.5.1 154.35 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5.1 141.22 NOTE
r-devel-osx-x86_64-clang 1.5.1 118.57 NOTE
r-devel-windows-ix86+x86_64 1.5.1 19.00 156.00 175.00 NOTE
r-patched-linux-x86_64 1.5.1 6.71 75.49 82.20 NOTE
r-patched-solaris-sparc 1.5.1 853.30 NOTE
r-patched-solaris-x86 1.5.1 182.00 NOTE
r-release-linux-x86_64 1.5.1 6.10 136.51 142.61 ERROR
r-release-osx-x86_64-mavericks 1.5.1 NOTE
r-release-windows-ix86+x86_64 1.5.1 20.00 149.00 169.00 NOTE
r-oldrel-windows-ix86+x86_64 1.5.1 25.00 151.00 176.00 OK

Check Details

Version: 1.5.1
Check: R code for possible problems
Result: NOTE
    .parse.rhea: no visible global function definition for ‘tail’
    get.chebi.all: no visible global function definition for
     ‘download.file’
    get.chebi.all: no visible global function definition for ‘read.delim’
    get.rhea.all: no visible global function definition for ‘download.file’
    get.unipathway.all: no visible global function definition for
     ‘download.file’
    Undefined global functions or variables:
     download.file read.delim tail
    Consider adding
     importFrom("utils", "download.file", "read.delim", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.5.1
Check: examples
Result: ERROR
    Running examples in ‘RbioRXN-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: parse.metacyc.reaction
    > ### Title: Parse MetaCyc reaction data (reactions.dat in attribute-value
    > ### format)
    > ### Aliases: parse.metacyc.reaction
    > ### Keywords: MetaCyc
    >
    > ### ** Examples
    >
    > url = "http://bioinformatics.ai.sri.com/ptools/flatfile-samples/reactions.dat"
    > tmpdest = tempfile(pattern = "reactions")
    > download.file(url, destfile=tmpdest)
    trying URL 'http://bioinformatics.ai.sri.com/ptools/flatfile-samples/reactions.dat'
    Warning in download.file(url, destfile = tmpdest) :
     unable to connect to 'bioinformatics.ai.sri.com' on port 80.
    Error in download.file(url, destfile = tmpdest) :
     cannot open URL 'http://bioinformatics.ai.sri.com/ptools/flatfile-samples/reactions.dat'
    Execution halted
Flavor: r-release-linux-x86_64