CRAN Package Check Results for Package Rearrangement

Last updated on 2014-04-21 17:47:59.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.15 30.99 32.14 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.10 32.84 33.94 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 70.70 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 66.53 NOTE
r-devel-osx-x86_64-clang 1.0 56.63 NOTE
r-devel-osx-x86_64-gcc 1.0 ERROR
r-devel-windows-ix86+x86_64 1.0 3.00 52.00 55.00 NOTE
r-patched-linux-x86_64 1.0 1.24 31.55 32.79 NOTE
r-patched-solaris-sparc 1.0 371.60 NOTE
r-patched-solaris-x86 1.0 83.20 NOTE
r-release-linux-x86_64 1.0 1.15 31.53 32.68 NOTE
r-release-osx-x86_64-mavericks 1.0 WARN
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 4.00 47.00 51.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 3.00 76.00 79.00 NOTE

Check Details

Version: 1.0
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘vignette.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'Rearrangement-package.Rd':
     \examples lines wider than 100 characters:
     plot(age,height,pch=21,bg='gray',cex=.5,xlab="Age(years)",ylab="Height(cms)", main="CEF (Regression Splines)",col='gray')
     formula <- height~I(sin(nage))+I(cos(nage))+I(sin(2*nage))+I(cos(2*nage))+I(sin(3*nage))+I(cos(3*nage))+ I(sin(4*nage)) + I(cos(4*nage) ... [TRUNCATED]
    
    Rd file 'lines.conint.Rd':
     \examples lines wider than 100 characters:
     formula<-height~I(sin(nage))+I(cos(nage))+I(sin(2*nage))+I(cos(2*nage))+I(sin(3*nage))+I(cos(3*nage))+I(sin(4*nage))+I(cos(4*nage))
     axis(1, at = seq(-2*pi*min(age)/(max(age)-min(age)), 2*pi+1, by=5*2*pi/(max(age)-min(age))), label = seq(0, max(age)+1, by=5))
    
    Rd file 'plot.conint.Rd':
     \examples lines wider than 100 characters:
     formula <- height ~ I(sin(nage))+I(cos(nage))+I(sin(2*nage))+I(cos(2*nage))+I(sin(3*nage))+I(cos(3*nage))+I(sin(4*nage))+I(cos(4*nage))
    
    Rd file 'points.conint.Rd':
     \examples lines wider than 100 characters:
     formula<-height~I(sin(nage))+I(cos(nage))+I(sin(2*nage))+I(cos(2*nage))+I(sin(3*nage))+I(cos(3*nage))+I(sin(4*nage))+I(cos(4*nage))
    
    Rd file 'polygon.conint.Rd':
     \examples lines wider than 100 characters:
     formula <- height~I(sin(nage))+I(cos(nage))+I(sin(2*nage))+I(cos(2*nage))+I(sin(3*nage))+I(cos(3*nage))+I(sin(4*nage))+I(cos(4*nage))
     plot(nage,height,pch=21,bg='gray',cex=0.5,xlab="Age (years)",ylab="Height (cms)",col='gray',xaxt='n')
     axis(1, at = seq(-2*pi*min(age)/(max(age)-min(age)), 2*pi+1,by=5*2*pi/(max(age)-min(age))), label = seq(0, max(age)+1, by=5))
    
    Rd file 'rconint.Rd':
     \examples lines wider than 100 characters:
     formula <- height ~ I(sin(nage))+I(cos(nage))+I(sin(2*nage))+I(cos(2*nage))+I(sin(3*nage))+I(cos(3*nage))+I(sin(4*nage))+I(cos(4*nage))
     axis(1, at = seq(-2*pi*min(age)/(max(age)-min(age)), 2*pi+1,by=5*2*pi/(max(age)-min(age))), label = seq(0, max(age)+1, by=5))
     legend(min(nage),max(height),c("95% CI Original","95% CI Rearranged"),lty=c(1,1),lwd=c(2,2),col=c("lightgray","darkgray"),bty="n");
    
    Rd file 'rearrangement.Rd':
     \examples lines wider than 100 characters:
     plot(age,height,pch=21,bg='gray',cex=.5,xlab="Age (years)",ylab="Height (cms)",main="CEF (Regression Splines)",col='gray')
     fform <- height ~ I(sin(nage))+I(cos(nage))+I(sin(2*nage))+I(cos(2*nage))+I(sin(3*nage))+I(cos(3*nage))+I(sin(4*nage))+I(cos(4*nage))
     freg <- rbind(1, sin(nages), cos(nages), sin(2*nages), cos(2*nages),sin(3*nages), cos(3*nages), sin(4*nages), cos(4*nages) )
     persp(taus[tdom],ages[adom],rrfcqf[tdom,adom],xlab='quantile',ylab='age',zlab='height',col='lightgreen',theta=315,phi=25,shade=.5)
     contour(taus,ages,rrfcqf,xlab='quantile',ylab='age',col='green',levels=10*c(ceiling(min(fcqf)/10):floor(max(fcqf)/10)))
    
    Rd file 'simconboot.Rd':
     \usage lines wider than 90 characters:
     simconboot(x,y,estimator,formula,B=200,alpha=0.05,sampsize=length(x),seed=8,colInt=c(5:39)/2,...)
     \examples lines wider than 100 characters:
     formula <- height~I(sin(nage))+I(cos(nage))+I(sin(2*nage))+I(cos(2*nage))+I(sin(3*nage))+I(cos(3*nage))+I(sin(4*nage))+I(cos(4*nage))
     axis(1, at = seq(-2*pi*min(age)/(max(age)-min(age)), 2*pi+1, by=5*2*pi/(max(age)-min(age))), label = seq(0, max(age)+1, by=5))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘quantreg’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-gcc

Version: 1.0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    939b088/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'vignette.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64