CRAN Package Check Results for Package Rknots

Last updated on 2014-04-16 09:48:06.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 2.55 77.50 80.05 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.1 2.64 78.21 80.84 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.1 218.45 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.1 204.80 NOTE
r-devel-macosx-x86_64-clang 1.2.1 134.84 NOTE
r-devel-macosx-x86_64-gcc 1.2.1 NOTE
r-devel-windows-ix86+x86_64 1.2.1 8.00 110.00 118.00 NOTE
r-patched-linux-x86_64 1.2.1 2.74 79.70 82.44 NOTE
r-patched-solaris-sparc 1.2.1 895.10 NOTE
r-patched-solaris-x86 1.2.1 183.60 NOTE
r-release-linux-ix86 1.2.1 6.00 116.00 122.00 NOTE
r-release-linux-x86_64 1.2.1 2.58 68.04 70.63 NOTE
r-release-macosx-x86_64 1.2.1 NOTE
r-release-windows-ix86+x86_64 1.2.1 9.00 117.00 126.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2.1 9.00 279.00 288.00 NOTE

Check Details

Version: 1.2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘bio3d’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     .project
    These were most likely included in error. See section ‘Package
    structure’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: top-level files
Result: NOTE
    File
     LICENCE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘rgl’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘methods’ ‘rSymPy’ ‘rgl’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    Found the following calls to data() loading into the global environment:
    File ‘Rknots/R/makeExamples.R’:
     data(Rolfsen.table, package = "Rknots")
     data(link.table, package = "Rknots")
    See section ‘Good practice’ in ‘?data’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-macosx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.2.1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘Rknots_vignette.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64

Version: 1.2.1
Check: Rd line widths
Result: NOTE
    Rd file 'findGaps.Rd':
     \examples lines wider than 100 characters:
     protein <- loadProtein(system.file("extdata/1AJC_chainA.pdb", package="Rknots"), join.gaps = TRUE)
    
    Rd file 'plotDiagram.Rd':
     \usage lines wider than 90 characters:
     plotDiagram(points3D, ends, pca = FALSE, size = 1, colors = c(), return.vars = FALSE, ...)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2.1
Check: dependencies in R code
Result: NOTE
    ‘library’ or ‘require’ call to ‘rgl’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘methods’ ‘rSymPy’ ‘rgl’
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-macosx-x86_64

Version: 1.2.1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'Rknots_vignette.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64