Last updated on 2014-03-10 19:49:55.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.1 | 2.56 | 79.22 | 81.78 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 2.55 | 80.11 | 82.66 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 205.78 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 198.76 | NOTE | |||
| r-devel-macosx-x86_64-clang | 1.2.1 | 128.06 | NOTE | |||
| r-devel-macosx-x86_64-gcc | 1.2.1 | NOTE | ||||
| r-devel-windows-ix86+x86_64 | 1.2.1 | 8.00 | 111.00 | 119.00 | NOTE | |
| r-patched-linux-x86_64 | 1.2.1 | 2.77 | 84.30 | 87.08 | NOTE | |
| r-patched-solaris-sparc | 1.2.1 | 947.40 | NOTE | |||
| r-patched-solaris-x86 | 1.2.1 | 183.10 | NOTE | |||
| r-release-linux-ix86 | 1.2.1 | 5.00 | 161.00 | 166.00 | NOTE | |
| r-release-linux-x86_64 | 1.2.1 | 2.63 | 81.62 | 84.25 | NOTE | |
| r-release-macosx-x86_64 | 1.2.1 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.2.1 | 9.00 | 123.00 | 132.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.2.1 | 11.00 | 347.00 | 358.00 | NOTE |
Version: 1.2.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘bio3d’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.2.1
Check: for hidden files and directories
Result: NOTE
Found the following hidden files and directories:
.project
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64
Version: 1.2.1
Check: top-level files
Result: NOTE
File
LICENCE
is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64
Version: 1.2.1
Check: dependencies in R code
Result: NOTE
‘library’ or ‘require’ call to ‘rgl’ which was already attached by Depends.
Please remove these calls from your code.
Packages in Depends field not imported from:
‘methods’ ‘rSymPy’ ‘rgl’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64
Version: 1.2.1
Check: R code for possible problems
Result: NOTE
Found the following calls to data() loading into the global environment:
File ‘Rknots/R/makeExamples.R’:
data(Rolfsen.table, package = "Rknots")
data(link.table, package = "Rknots")
See section ‘Good practice’ in ‘?data’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-macosx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64
Version: 1.2.1
Check: for old-style vignette sources
Result: NOTE
Vignette sources only in ‘inst/doc’:
‘Rknots_vignette.Rnw’
A ‘vignettes’ directory is required as from R 3.1.0
and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86
Version: 1.2.1
Check: Rd line widths
Result: NOTE
Rd file ‘findGaps.Rd’:
\examples lines wider than 100 characters:
protein <- loadProtein(system.file("extdata/1AJC_chainA.pdb", package="Rknots"), join.gaps = TRUE)
Rd file ‘plotDiagram.Rd’:
\usage lines wider than 90 characters:
plotDiagram(points3D, ends, pca = FALSE, size = 1, colors = c(), return.vars = FALSE, ...)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: dependencies in R code
Result: NOTE
‘library’ or ‘require’ call to ‘rgl’ which was already attached by Depends.
Please remove these calls from your code.
Packages in Depends field not imported from:
‘methods’ ‘rSymPy’ ‘rgl’
These packages need to be imported from for the case when
this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-macosx-x86_64-gcc
Version: 1.2.1
Check: for old-style vignette sources
Result: NOTE
Vignette sources only in ‘inst/doc’:
‘Rknots_vignette.Rnw’
A ‘vignettes’ directory will be required as from R 3.1.0
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64
Version: 1.2.1
Check: dependencies in R code
Result: NOTE
‘library’ or ‘require’ call to ‘rgl’ which was already attached by Depends.
Please remove these calls from your code.
Packages in Depends field not imported from:
‘methods’ ‘rSymPy’ ‘rgl’
These packages needs to imported from for the case when
this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-macosx-x86_64
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘Rknots-Ex.R’ failed
The error most likely occurred in:
> ### Name: msr
> ### Title: Minimal Structure Reduction
> ### Aliases: msr
> ### Keywords: structurereduction
>
> ### ** Examples
>
>
> knot <- makeExampleKnot()
> reduced <- msr(points3D = knot)
>
> ## 3D plot of both the trefoil and its reduced structure
> require(rgl)
> plotKnot3D(knot, ends = c(), radius = 0.01, lwd = 2.5)
Sun Jan 12 16:11:54 hagal.research.att.com R[19043] <Error>: unknown error code: invalid pixel format
Sun Jan 12 16:11:54 hagal.research.att.com R[19043] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
X Error of failed request: GLXBadContext
Major opcode of failed request: 0 ()
Serial number of failed request: 27
Current serial number in output stream: 27
Flavor: r-release-macosx-x86_64