CRAN Package Check Results for Package Rknots

Last updated on 2014-09-22 15:48:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-patched-linux-x86_64 1.2.1 2.38 82.86 85.24 NOTE
r-release-linux-ix86 1.2.1 3.07 93.92 97.00 NOTE
r-release-osx-x86_64-mavericks 1.2.1 NOTE
r-release-osx-x86_64-snowleopard 1.2.1 NOTE

Check Details

Version: 1.2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘bio3d’
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     .project
    These were most likely included in error. See section ‘Package
    structure’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: top-level files
Result: NOTE
    File
     LICENCE
    is not mentioned in the DESCRIPTION file.
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘rgl’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘methods’ ‘rSymPy’ ‘rgl’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-osx-x86_64-mavericks

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    Found the following calls to data() loading into the global environment:
    File ‘Rknots/R/makeExamples.R’:
     data(Rolfsen.table, package = "Rknots")
     data(link.table, package = "Rknots")
    See section ‘Good practice’ in ‘?data’.
Flavors: r-patched-linux-x86_64, r-release-linux-ix86

Version: 1.2.1
Check: Rd line widths
Result: NOTE
    Rd file 'findGaps.Rd':
     \examples lines wider than 100 characters:
     protein <- loadProtein(system.file("extdata/1AJC_chainA.pdb", package="Rknots"), join.gaps = TRUE)
    
    Rd file 'plotDiagram.Rd':
     \usage lines wider than 90 characters:
     plotDiagram(points3D, ends, pca = FALSE, size = 1, colors = c(), return.vars = FALSE, ...)
    
    These lines will be truncated in the PDF manual.
Flavor: r-patched-linux-x86_64

Version: 1.2.1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘Rknots_vignette.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: dependencies in R code
Result: NOTE
    ‘library’ or ‘require’ call to ‘rgl’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘methods’ ‘rSymPy’ ‘rgl’
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-snowleopard