CRAN Package Check Results for Package Rknots

Last updated on 2014-07-29 08:49:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 3.08 74.67 77.74 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.1 2.38 74.65 77.04 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.1 191.56 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.1 192.25 NOTE
r-devel-osx-x86_64-clang 1.2.1 132.48 NOTE
r-devel-windows-ix86+x86_64 1.2.1 8.00 111.00 119.00 NOTE
r-patched-linux-x86_64 1.2.1 2.43 83.84 86.28 NOTE
r-patched-solaris-sparc 1.2.1 895.10 NOTE
r-patched-solaris-x86 1.2.1 191.50 NOTE
r-release-linux-ix86 1.2.1 3.09 91.53 94.62 NOTE
r-release-linux-x86_64 1.2.1 2.52 75.30 77.82 NOTE
r-release-osx-x86_64-mavericks 1.2.1 NOTE
r-release-osx-x86_64-snowleopard 1.2.1 NOTE
r-release-windows-ix86+x86_64 1.2.1 8.00 107.00 115.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2.1 8.00 285.00 293.00 NOTE

Check Details

Version: 1.2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: bio3d
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     .project
    These were most likely included in error. See section Package
    structure in the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: top-level files
Result: NOTE
    File
     LICENCE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to rgl which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     methods rSymPy rgl
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    Found the following calls to data() loading into the global environment:
    File Rknots/R/makeExamples.R :
     data(Rolfsen.table, package = "Rknots")
     data(link.table, package = "Rknots")
    See section Good practice in ?data .
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.2.1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in inst/doc :
     Rknots_vignette.Rnw
    A vignettes directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.2.1
Check: Rd line widths
Result: NOTE
    Rd file 'findGaps.Rd':
     \examples lines wider than 100 characters:
     protein <- loadProtein(system.file("extdata/1AJC_chainA.pdb", package="Rknots"), join.gaps = TRUE)
    
    Rd file 'plotDiagram.Rd':
     \usage lines wider than 90 characters:
     plotDiagram(points3D, ends, pca = FALSE, size = 1, colors = c(), return.vars = FALSE, ...)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2.1
Check: dependencies in R code
Result: NOTE
     library or require call to rgl which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     methods rSymPy rgl
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'Rknots_vignette.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64