CRAN Package Check Results for Package RobLoxBioC

Last updated on 2015-08-28 12:48:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9 10.99 110.26 121.25 NOTE
r-devel-linux-x86_64-debian-gcc 0.9 11.14 106.68 117.82 NOTE
r-devel-linux-x86_64-fedora-clang 0.9 253.57 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9 238.99 NOTE
r-devel-osx-x86_64-clang 0.9 209.05 NOTE
r-devel-windows-ix86+x86_64 0.9 35.00 238.00 273.00 NOTE
r-patched-linux-x86_64 0.9 11.50 119.49 130.98 NOTE
r-patched-solaris-sparc 0.9 1636.70 NOTE
r-patched-solaris-x86 0.9 353.50 NOTE
r-release-linux-x86_64 0.9 11.24 119.14 130.38 NOTE
r-release-osx-x86_64-mavericks 0.9 ERROR
r-release-windows-ix86+x86_64 0.9 43.00 198.00 241.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9 61.00 299.00 360.00 NOTE

Check Details

Version: 0.9
Check: R code for possible problems
Result: NOTE
    .getA1.locsc: no visible global function definition for ‘approx’
    .getA2.locsc: no visible global function definition for ‘approx’
    .geta.locsc: no visible global function definition for ‘approx’
    .getb.locsc: no visible global function definition for ‘approx’
    AffySimStudy: no visible global function definition for ‘curve’
    AffySimStudy: no visible binding for global variable ‘pnorm’
    AffySimStudy : fun: no visible global function definition for ‘pnorm’
    AffySimStudy: no visible global function definition for ‘legend’
    AffySimStudy: no visible global function definition for ‘rbinom’
    AffySimStudy: no visible global function definition for ‘rnorm’
    AffySimStudy: no visible global function definition for ‘dev.new’
    AffySimStudy: no visible global function definition for ‘qnorm’
    AffySimStudy: no visible global function definition for ‘estimate’
    AffySimStudy: no visible global function definition for ‘layout’
    AffySimStudy: no visible global function definition for ‘abline’
    AffySimStudy: no visible global function definition for ‘par’
    IlluminaSimStudy: no visible global function definition for ‘curve’
    IlluminaSimStudy: no visible binding for global variable ‘pnorm’
    IlluminaSimStudy : fun: no visible global function definition for
     ‘pnorm’
    IlluminaSimStudy: no visible global function definition for ‘legend’
    IlluminaSimStudy: no visible global function definition for ‘rbinom’
    IlluminaSimStudy: no visible global function definition for ‘rnorm’
    IlluminaSimStudy: no visible global function definition for ‘dev.new’
    IlluminaSimStudy: no visible global function definition for ‘qnorm’
    IlluminaSimStudy: no visible global function definition for ‘estimate’
    IlluminaSimStudy: no visible global function definition for ‘layout’
    IlluminaSimStudy: no visible global function definition for ‘abline’
    IlluminaSimStudy: no visible global function definition for ‘par’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘arrayNames’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘getArrayData’
    KolmogorovMinDist,matrix-Norm : ksdist: no visible global function
     definition for ‘pnorm’
    KolmogorovMinDist,matrix-Norm: no visible global function definition
     for ‘qnorm’
    KolmogorovMinDist,matrix-Norm: no visible global function definition
     for ‘optim’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘mappedkeys’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘revmap’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘packageDescription’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘featureData<-’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘phenoData<-’
    robloxbioc,matrix: no visible global function definition for ‘qnorm’
    robloxbioc,matrix: no visible global function definition for ‘uniroot’
    Undefined global functions or variables:
     abline approx arrayNames curve dev.new estimate featureData<-
     getArrayData layout legend mappedkeys optim packageDescription par
     phenoData<- pnorm qnorm rbinom revmap rnorm uniroot
    Consider adding
     importFrom("grDevices", "dev.new")
     importFrom("graphics", "abline", "curve", "layout", "legend", "par")
     importFrom("stats", "approx", "optim", "pnorm", "qnorm", "rbinom",
     "rnorm", "uniroot")
     importFrom("utils", "packageDescription")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.9
Check: R code for possible problems
Result: NOTE
    robloxbioc,beadLevelData: warning in packageDescription(annoPkg, field
     = "Version"): partial argument match of 'field' to 'fields'
    AffySimStudy: no visible global function definition for ‘estimate’
    IlluminaSimStudy: no visible global function definition for ‘estimate’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘arrayNames’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘getArrayData’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘mappedkeys’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘revmap’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘featureData<-’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘phenoData<-’
    Undefined global functions or variables:
     arrayNames estimate featureData<- getArrayData mappedkeys phenoData<-
     revmap
Flavor: r-devel-osx-x86_64-clang

Version: 0.9
Check: R code for possible problems
Result: NOTE
    robloxbioc,beadLevelData : .local: warning in
     packageDescription(annoPkg, field = "Version"): partial argument
     match of ‘field’ to ‘fields’
    AffySimStudy: no visible global function definition for ‘estimate’
    IlluminaSimStudy: no visible global function definition for ‘estimate’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution : .local: no
     visible global function definition for ‘arrayNames’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution : .local: no
     visible global function definition for ‘getArrayData’
    robloxbioc,beadLevelData : .local: no visible global function
     definition for ‘mappedkeys’
    robloxbioc,beadLevelData : .local: no visible global function
     definition for ‘revmap’
    robloxbioc,beadLevelData : .local: no visible global function
     definition for ‘featureData<-’
    robloxbioc,beadLevelData : .local: no visible global function
     definition for ‘phenoData<-’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-mavericks