CRAN Package Check Results for Package RobLoxBioC

Last updated on 2016-12-07 17:52:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9 14.97 144.14 159.11 NOTE
r-devel-linux-x86_64-debian-gcc 0.9 15.03 145.02 160.05 NOTE
r-devel-linux-x86_64-fedora-clang 0.9 280.16 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.9 283.42 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.9 200.86 NOTE
r-devel-windows-ix86+x86_64 0.9 47.00 264.00 311.00 NOTE
r-patched-linux-x86_64 0.9 13.26 132.86 146.12 NOTE
r-patched-solaris-sparc 0.9 1529.40 NOTE
r-patched-solaris-x86 0.9 314.00 NOTE
r-release-linux-x86_64 0.9 13.69 130.13 143.83 NOTE
r-release-osx-x86_64-mavericks 0.9 NOTE
r-release-windows-ix86+x86_64 0.9 30.00 259.00 289.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9 46.00 205.00 251.00 NOTE

Check Details

Version: 0.9
Check: R code for possible problems
Result: NOTE
    AffySimStudy: no visible global function definition for ‘curve’
    AffySimStudy: no visible binding for global variable ‘pnorm’
    AffySimStudy : fun: no visible global function definition for ‘pnorm’
    AffySimStudy: no visible global function definition for ‘legend’
    AffySimStudy: no visible global function definition for ‘rbinom’
    AffySimStudy: no visible global function definition for ‘rnorm’
    AffySimStudy: no visible global function definition for ‘dev.new’
    AffySimStudy: no visible global function definition for ‘qnorm’
    AffySimStudy: no visible global function definition for ‘estimate’
    AffySimStudy: no visible global function definition for ‘layout’
    AffySimStudy: no visible global function definition for ‘abline’
    AffySimStudy: no visible global function definition for ‘par’
    IlluminaSimStudy: no visible global function definition for ‘curve’
    IlluminaSimStudy: no visible binding for global variable ‘pnorm’
    IlluminaSimStudy : fun: no visible global function definition for
     ‘pnorm’
    IlluminaSimStudy: no visible global function definition for ‘legend’
    IlluminaSimStudy: no visible global function definition for ‘rbinom’
    IlluminaSimStudy: no visible global function definition for ‘rnorm’
    IlluminaSimStudy: no visible global function definition for ‘dev.new’
    IlluminaSimStudy: no visible global function definition for ‘qnorm’
    IlluminaSimStudy: no visible global function definition for ‘estimate’
    IlluminaSimStudy: no visible global function definition for ‘layout’
    IlluminaSimStudy: no visible global function definition for ‘abline’
    IlluminaSimStudy: no visible global function definition for ‘par’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘arrayNames’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘getArrayData’
    KolmogorovMinDist,matrix-Norm : ksdist: no visible global function
     definition for ‘pnorm’
    KolmogorovMinDist,matrix-Norm: no visible global function definition
     for ‘qnorm’
    KolmogorovMinDist,matrix-Norm: no visible global function definition
     for ‘optim’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘mappedkeys’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘revmap’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘packageDescription’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘featureData<-’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘phenoData<-’
    robloxbioc,matrix: no visible global function definition for ‘qnorm’
    robloxbioc,matrix: no visible global function definition for ‘uniroot’
    Undefined global functions or variables:
     abline arrayNames curve dev.new estimate featureData<- getArrayData
     layout legend mappedkeys optim packageDescription par phenoData<-
     pnorm qnorm rbinom revmap rnorm uniroot
    Consider adding
     importFrom("grDevices", "dev.new")
     importFrom("graphics", "abline", "curve", "layout", "legend", "par")
     importFrom("stats", "optim", "pnorm", "qnorm", "rbinom", "rnorm",
     "uniroot")
     importFrom("utils", "packageDescription")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.9
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    AffySimStudy: no visible global function definition for ‘curve’
    AffySimStudy: no visible binding for global variable ‘pnorm’
    AffySimStudy : fun: no visible global function definition for ‘pnorm’
    AffySimStudy: no visible global function definition for ‘legend’
    AffySimStudy: no visible global function definition for ‘rbinom’
    AffySimStudy: no visible global function definition for ‘rnorm’
    AffySimStudy: no visible global function definition for ‘dev.new’
    AffySimStudy: no visible global function definition for ‘qnorm’
    AffySimStudy: no visible global function definition for ‘estimate’
    AffySimStudy: no visible global function definition for ‘layout’
    AffySimStudy: no visible global function definition for ‘abline’
    AffySimStudy: no visible global function definition for ‘par’
    IlluminaSimStudy: no visible global function definition for ‘curve’
    IlluminaSimStudy: no visible binding for global variable ‘pnorm’
    IlluminaSimStudy : fun: no visible global function definition for
     ‘pnorm’
    IlluminaSimStudy: no visible global function definition for ‘legend’
    IlluminaSimStudy: no visible global function definition for ‘rbinom’
    IlluminaSimStudy: no visible global function definition for ‘rnorm’
    IlluminaSimStudy: no visible global function definition for ‘dev.new’
    IlluminaSimStudy: no visible global function definition for ‘qnorm’
    IlluminaSimStudy: no visible global function definition for ‘estimate’
    IlluminaSimStudy: no visible global function definition for ‘layout’
    IlluminaSimStudy: no visible global function definition for ‘abline’
    IlluminaSimStudy: no visible global function definition for ‘par’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘arrayNames’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘getArrayData’
    KolmogorovMinDist,matrix-Norm : ksdist: no visible global function
     definition for ‘pnorm’
    KolmogorovMinDist,matrix-Norm: no visible global function definition
     for ‘qnorm’
    KolmogorovMinDist,matrix-Norm: no visible global function definition
     for ‘optim’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘mappedkeys’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘revmap’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘packageDescription’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘featureData<-’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘phenoData<-’
    robloxbioc,matrix: no visible global function definition for ‘qnorm’
    robloxbioc,matrix: no visible global function definition for ‘uniroot’
    Undefined global functions or variables:
     abline arrayNames curve dev.new estimate featureData<- getArrayData
     layout legend mappedkeys optim packageDescription par phenoData<-
     pnorm qnorm rbinom revmap rnorm uniroot
    Consider adding
     importFrom("grDevices", "dev.new")
     importFrom("graphics", "abline", "curve", "layout", "legend", "par")
     importFrom("stats", "optim", "pnorm", "qnorm", "rbinom", "rnorm",
     "uniroot")
     importFrom("utils", "packageDescription")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9
Check: R code for possible problems
Result: NOTE
    .getA1.locsc: no visible global function definition for ‘approx’
    .getA2.locsc: no visible global function definition for ‘approx’
    .geta.locsc: no visible global function definition for ‘approx’
    .getb.locsc: no visible global function definition for ‘approx’
    AffySimStudy: no visible global function definition for ‘curve’
    AffySimStudy: no visible binding for global variable ‘pnorm’
    AffySimStudy : fun: no visible global function definition for ‘pnorm’
    AffySimStudy: no visible global function definition for ‘legend’
    AffySimStudy: no visible global function definition for ‘rbinom’
    AffySimStudy: no visible global function definition for ‘rnorm’
    AffySimStudy: no visible global function definition for ‘dev.new’
    AffySimStudy: no visible global function definition for ‘qnorm’
    AffySimStudy: no visible global function definition for ‘estimate’
    AffySimStudy: no visible global function definition for ‘layout’
    AffySimStudy: no visible global function definition for ‘abline’
    AffySimStudy: no visible global function definition for ‘par’
    IlluminaSimStudy: no visible global function definition for ‘curve’
    IlluminaSimStudy: no visible binding for global variable ‘pnorm’
    IlluminaSimStudy : fun: no visible global function definition for
     ‘pnorm’
    IlluminaSimStudy: no visible global function definition for ‘legend’
    IlluminaSimStudy: no visible global function definition for ‘rbinom’
    IlluminaSimStudy: no visible global function definition for ‘rnorm’
    IlluminaSimStudy: no visible global function definition for ‘dev.new’
    IlluminaSimStudy: no visible global function definition for ‘qnorm’
    IlluminaSimStudy: no visible global function definition for ‘estimate’
    IlluminaSimStudy: no visible global function definition for ‘layout’
    IlluminaSimStudy: no visible global function definition for ‘abline’
    IlluminaSimStudy: no visible global function definition for ‘par’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘arrayNames’
    KolmogorovMinDist,BeadLevelList-AbscontDistribution: no visible global
     function definition for ‘getArrayData’
    KolmogorovMinDist,matrix-Norm : ksdist: no visible global function
     definition for ‘pnorm’
    KolmogorovMinDist,matrix-Norm: no visible global function definition
     for ‘qnorm’
    KolmogorovMinDist,matrix-Norm: no visible global function definition
     for ‘optim’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘mappedkeys’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘revmap’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘packageDescription’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘featureData<-’
    robloxbioc,beadLevelData: no visible global function definition for
     ‘phenoData<-’
    robloxbioc,matrix: no visible global function definition for ‘qnorm’
    robloxbioc,matrix: no visible global function definition for ‘uniroot’
    Undefined global functions or variables:
     abline approx arrayNames curve dev.new estimate featureData<-
     getArrayData layout legend mappedkeys optim packageDescription par
     phenoData<- pnorm qnorm rbinom revmap rnorm uniroot
    Consider adding
     importFrom("grDevices", "dev.new")
     importFrom("graphics", "abline", "curve", "layout", "legend", "par")
     importFrom("stats", "approx", "optim", "pnorm", "qnorm", "rbinom",
     "rnorm", "uniroot")
     importFrom("utils", "packageDescription")
    to your NAMESPACE file.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9
Check: R code for possible problems
Result: NOTE
    robloxbioc,beadLevelData : .local: warning in
     packageDescription(annoPkg, field = "Version"): partial argument
     match of 'field' to 'fields'
    AffySimStudy: no visible global function definition for 'estimate'
    IlluminaSimStudy: no visible global function definition for 'estimate'
    KolmogorovMinDist,BeadLevelList-AbscontDistribution : .local: no
     visible global function definition for 'arrayNames'
    KolmogorovMinDist,BeadLevelList-AbscontDistribution : .local: no
     visible global function definition for 'getArrayData'
    robloxbioc,beadLevelData : .local: no visible global function
     definition for 'mappedkeys'
    robloxbioc,beadLevelData : .local: no visible global function
     definition for 'revmap'
    robloxbioc,beadLevelData : .local: no visible global function
     definition for 'featureData<-'
    robloxbioc,beadLevelData : .local: no visible global function
     definition for 'phenoData<-'
Flavor: r-oldrel-windows-ix86+x86_64