CRAN Package Check Results for Package SIMMS

Last updated on 2015-07-06 14:48:54.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 3.01 50.29 53.30 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.1 2.81 49.45 52.26 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.1 108.40 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.1 101.85 NOTE
r-devel-osx-x86_64-clang 1.0.1 94.87 OK
r-devel-windows-ix86+x86_64 1.0.1 11.00 82.00 93.00 NOTE
r-patched-linux-x86_64 1.0.1 2.82 49.59 52.41 OK
r-patched-solaris-sparc 1.0.1 637.60 OK
r-patched-solaris-x86 1.0.1 143.70 OK
r-release-linux-x86_64 1.0.1 3.06 51.65 54.71 OK
r-release-osx-x86_64-mavericks 1.0.1 OK
r-release-windows-ix86+x86_64 1.0.1 11.00 79.00 90.00 OK
r-oldrel-windows-ix86+x86_64 1.0.1 13.00 100.00 113.00 OK

Check Details

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    calculate.network.coefficients: no visible global function definition
     for ‘read.table’
    create.KM.plot: no visible global function definition for ‘png’
    create.KM.plot: no visible global function definition for ‘par’
    create.KM.plot: no visible global function definition for ‘plot’
    create.KM.plot: no visible global function definition for ‘text’
    create.KM.plot: no visible global function definition for ‘title’
    create.KM.plot: no visible global function definition for ‘dev.off’
    create.classifier.multivariate: no visible global function definition
     for ‘read.table’
    create.classifier.multivariate: no visible global function definition
     for ‘as.formula’
    create.classifier.multivariate: no visible global function definition
     for ‘write.table’
    create.classifier.multivariate: no visible global function definition
     for ‘coef’
    create.classifier.multivariate: no visible global function definition
     for ‘predict’
    create.classifier.multivariate: no visible global function definition
     for ‘median’
    create.classifier.univariate: no visible global function definition for
     ‘read.table’
    create.classifier.univariate: no visible global function definition for
     ‘median’
    create.classifier.univariate: no visible global function definition for
     ‘write.table’
    create.classifier.univariate: no visible global function definition for
     ‘p.adjust’
    create.sensitivity.plot: no visible global function definition for
     ‘png’
    create.sensitivity.plot: no visible global function definition for
     ‘par’
    create.sensitivity.plot: no visible global function definition for
     ‘plot’
    create.sensitivity.plot: no visible global function definition for
     ‘lines’
    create.sensitivity.plot: no visible global function definition for
     ‘title’
    create.sensitivity.plot: no visible global function definition for
     ‘legend’
    create.sensitivity.plot: no visible global function definition for
     ‘dev.off’
    create.sensitivity.plot: no visible global function definition for
     ‘write.table’
    create.survivalplots: no visible global function definition for
     ‘read.table’
    derive.network.features: no visible global function definition for
     ‘write.table’
    dichotomize.dataset: no visible global function definition for ‘median’
    fit.survivalmodel: no visible global function definition for
     ‘read.table’
    fit.survivalmodel: no visible global function definition for
     ‘as.formula’
    fit.survivalmodel: no visible global function definition for
     ‘write.table’
    get.chisq.stats: no visible global function definition for ‘pchisq’
    load.cancer.datasets: no visible global function definition for
     ‘read.table’
    pred.survivalmodel: no visible global function definition for
     ‘read.table’
    pred.survivalmodel: no visible global function definition for
     ‘write.table’
    pred.survivalmodel: no visible global function definition for ‘median’
    pred.survivalmodel: no visible global function definition for
     ‘p.adjust’
    prepare.training.validation.datasets: no visible global function
     definition for ‘write.table’
    prepare.training.validation.datasets: no visible global function
     definition for ‘read.table’
    Undefined global functions or variables:
     as.formula coef dev.off legend lines median p.adjust par pchisq plot
     png predict read.table text title write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64