CRAN Package Check Results for Package SNPRelate

Last updated on 2014-04-24 09:49:11.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.19 6.21 47.31 53.52 OK
r-devel-linux-x86_64-debian-gcc 0.9.19 8.78 47.26 56.05 OK
r-devel-linux-x86_64-fedora-clang 0.9.19 118.84 OK
r-devel-linux-x86_64-fedora-gcc 0.9.19 114.41 OK
r-devel-osx-x86_64-clang 0.9.19 97.64 OK --no-examples
r-devel-osx-x86_64-gcc 0.9.19 OK
r-devel-windows-ix86+x86_64 0.9.19 32.00 113.00 145.00 OK
r-patched-linux-x86_64 0.9.19 8.76 46.99 55.75 OK
r-patched-solaris-sparc 0.9.19 306.60 OK --no-examples --no-tests --no-vignettes
r-patched-solaris-x86 0.9.19 179.30 OK
r-release-linux-ix86 0.9.19 12.00 664.00 676.00 ERROR
r-release-linux-x86_64 0.9.19 8.82 48.14 56.95 OK
r-release-osx-x86_64-mavericks 0.9.19 WARN
r-release-osx-x86_64-snowleopard 0.9.19 NOTE
r-release-windows-ix86+x86_64 0.9.19 31.00 110.00 141.00 OK
r-oldrel-windows-ix86+x86_64 0.9.19 33.00 111.00 144.00 OK

Memtest notes: UBSAN valgrind valgrind

Check Details

Version: 0.9.19
Check: tests
Result: ERROR
    Running the tests in ‘tests/runTests.R’ failed.
    Last 13 lines of output:
     Using 4 CPU cores.
     PCA: the sum of all working genotypes (0, 1 and 2) = 2446510
     PCA: Mon Apr 21 18:21:06 2014 0%
     PCA: Mon Apr 21 18:21:06 2014 100%
     PCA: Mon Apr 21 18:21:06 2014 Begin (eigenvalues and eigenvectors)
     PCA: Mon Apr 21 18:21:06 2014 End (eigenvalues and eigenvectors)
     Principal Component Analysis (PCA) on SNP genotypes:
     Removing 365 non-autosomal SNPs.
     Removing 1 SNPs (monomorphic, < MAF, or > missing rate)
     Working space: 279 samples, 8722 SNPs
     Using 16 CPU cores.
     PCA: the sum of all working genotypes (0, 1 and 2) = 2446510
     PCA: Mon Apr 21 18:21:06 2014 0%
Flavor: r-release-linux-ix86

Version: 0.9.19
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    SNPRelate: 0.9.18
    Supported by Streaming SIMD Extensions 2 (SSE2).
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'SNPRelateTutorial.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `fullpage.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    gn_test/SNPRelate/vignettes/SNPRelateTutorial.tex:8: ==> Fatal error occurred,
     no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9.19
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    2fbd9f50/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9.19
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    SNPRelate: 0.9.18
    Supported by Streaming SIMD Extensions 2 (SSE2).
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'SNPRelateTutorial.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `fullpage.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard