CRAN Package Check Results for Package SNPassoc

Last updated on 2014-09-16 23:47:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.9-2 3.39 35.93 39.32 NOTE
r-devel-linux-x86_64-debian-gcc 1.9-2 1.40 35.70 37.10 NOTE
r-devel-linux-x86_64-fedora-clang 1.9-2 82.49 NOTE
r-devel-linux-x86_64-fedora-gcc 1.9-2 81.26 NOTE
r-devel-osx-x86_64-clang 1.9-2 65.83 NOTE
r-devel-windows-ix86+x86_64 1.9-2 4.00 53.00 57.00 NOTE
r-patched-linux-x86_64 1.9-2 1.45 38.05 39.50 NOTE
r-patched-solaris-sparc 1.9-2 532.20 NOTE
r-patched-solaris-x86 1.9-2 104.80 NOTE
r-release-linux-ix86 1.9-2 2.06 46.30 48.36 ERROR
r-release-linux-x86_64 1.9-2 1.49 38.56 40.05 OK
r-release-osx-x86_64-mavericks 1.9-2 OK
r-release-osx-x86_64-snowleopard 1.9-2 OK
r-release-windows-ix86+x86_64 1.9-2 4.00 58.00 62.00 OK
r-oldrel-windows-ix86+x86_64 1.9-2 5.00 58.00 63.00 OK

Check Details

Version: 1.9-2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘parallel’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.9-2
Check: R code for possible problems
Result: NOTE
    WGassociation: no visible global function definition for ‘mclapply’
    interleave: no visible global function definition for ‘mclapply’
    setupSNP: no visible global function definition for ‘mclapply’
    summary.setupSNP: no visible global function definition for ‘mclapply’
    tableHWE: no visible global function definition for ‘mclapply’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.9-2
Check: examples
Result: ERROR
    Running examples in ‘SNPassoc-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plotMissing
    > ### Title: Plot of missing genotypes
    > ### Aliases: plotMissing
    > ### Keywords: utilities
    >
    > ### ** Examples
    >
    > data(SNPs)
    > data(SNPs.info.pos)
    Warning in data(SNPs.info.pos) : data set ‘SNPs.info.pos’ not found
    > ans<-setupSNP(SNPs,colSNPs=6:40,sep="")
    > plotMissing(ans)
    Warning in `[.data.frame`(x, colSNPs, drop = FALSE) :
     'drop' argument will be ignored
    Error in plot.new() : internal read error in PDF_endpage
    Calls: plotMissing ... image -> image.default -> plot -> plot.default -> plot.new
    Execution halted
Flavor: r-release-linux-ix86