CRAN Package Check Results for Package SPMS

Last updated on 2014-04-25 09:52:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 1.02 22.52 23.54 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 0.93 22.37 23.30 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 44.76 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 44.30 NOTE
r-devel-osx-x86_64-clang 2.0 39.28 NOTE
r-devel-osx-x86_64-gcc 2.0 NOTE
r-devel-windows-ix86+x86_64 2.0 2.00 31.00 33.00 NOTE
r-patched-linux-x86_64 2.0 0.98 22.38 23.37 NOTE
r-patched-solaris-sparc 2.0 252.90 NOTE
r-patched-solaris-x86 2.0 55.10 NOTE
r-release-linux-ix86 2.0 2.00 38.00 40.00 NOTE
r-release-linux-x86_64 2.0 0.99 22.61 23.60 NOTE
r-release-osx-x86_64-mavericks 2.0 WARN
r-release-osx-x86_64-snowleopard 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 3.00 32.00 35.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 3.00 35.00 38.00 NOTE

Check Details

Version: 2.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘Matrix’
     All declared Imports should be used.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘RBGL’ ‘XML’ ‘graph’ ‘EBImage’ ‘igraph’
Flavor: r-devel-osx-x86_64-gcc

Version: 2.0
Check: R code for possible problems
Result: NOTE
    ErgodicPathShowing: no visible global function definition for
     ‘graph.data.frame’
    ErgodicPathShowing: no visible global function definition for ‘tkplot’
    depth_subPathwayMinner: no visible global function definition for
     ‘isAdjacent’
    depth_subPathwayMinner: no visible global function definition for
     ‘addEdge’
    depth_subPathwayMinner: no visible global function definition for
     ‘connComp’
    getData: no visible global function definition for ‘xmlRoot’
    getData: no visible global function definition for ‘xmlTreeParse’
    getData: no visible global function definition for ‘xmlName’
    getData: no visible global function definition for ‘xmlAttrs’
    getData: no visible global function definition for ‘xmlChildren’
    getData: no visible global function definition for ‘isAdjacent’
    getData: no visible global function definition for ‘addEdge’
    getData: no visible global function definition for ‘edges’
    getData: no visible global function definition for ‘connComp’
    getData: no visible global function definition for ‘dfs’
    getData: no visible global function definition for ‘sp.between’
    getData: no visible global function definition for ‘bfs’
    getNodesNum: no visible global function definition for ‘xmlRoot’
    getNodesNum: no visible global function definition for ‘xmlTreeParse’
    getNodesNum: no visible global function definition for ‘xmlName’
    getNodesNum: no visible global function definition for ‘xmlAttrs’
    getNodesNum: no visible global function definition for ‘xmlChildren’
    networkShowing_geneSymbol: no visible global function definition for
     ‘graph.data.frame’
    networkShowing_geneSymbol: no visible global function definition for
     ‘tkplot’
    networkShowing_geneSymbol: no visible global function definition for
     ‘V’
    networkShowing_hsa: no visible global function definition for
     ‘graph.data.frame’
    networkShowing_hsa: no visible global function definition for ‘tkplot’
    networkShowing_hsa: no visible global function definition for ‘V’
Flavor: r-devel-osx-x86_64-gcc

Version: 2.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘EBImage’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘RBGL’ ‘graph’ ‘EBImage’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.0
Check: R code for possible problems
Result: NOTE
    depth_subPathwayMinner: no visible global function definition for
     ‘isAdjacent’
    depth_subPathwayMinner: no visible global function definition for
     ‘addEdge’
    depth_subPathwayMinner: no visible global function definition for
     ‘connComp’
    getData: no visible global function definition for ‘isAdjacent’
    getData: no visible global function definition for ‘addEdge’
    getData: no visible global function definition for ‘connComp’
    getData: no visible global function definition for ‘dfs’
    getData: no visible global function definition for ‘sp.between’
    getData: no visible global function definition for ‘bfs’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    7c08b8c4/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks