CRAN Package Check Results for Package SPMS

Last updated on 2015-06-30 19:48:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 0.84 18.40 19.24 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 0.74 18.08 18.81 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 35.12 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 34.27 NOTE
r-devel-osx-x86_64-clang 2.0 39.66 NOTE
r-devel-windows-ix86+x86_64 2.0 5.00 26.00 31.00 NOTE
r-patched-linux-x86_64 2.0 0.93 19.28 20.21 NOTE
r-patched-solaris-sparc 2.0 254.70 NOTE
r-patched-solaris-x86 2.0 50.90 NOTE
r-release-linux-x86_64 2.0 1.11 20.50 21.61 NOTE
r-release-osx-x86_64-mavericks 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 4.00 33.00 37.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 3.00 55.00 58.00 NOTE

Check Details

Version: 2.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘EBImage’ ‘RBGL’ ‘XML’ ‘graph’ ‘igraph’ ‘png’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Namespace in Imports field not imported from: ‘Matrix’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    ErgodicPathShowing: no visible global function definition for
     ‘read.table’
    ErgodicPathShowing: no visible global function definition for
     ‘graph.data.frame’
    ErgodicPathShowing: no visible global function definition for ‘tkplot’
    broad_OnePictureShowing: no visible global function definition for
     ‘read.table’
    broad_OnePictureShowing: no visible global function definition for
     ‘read.delim’
    broad_OnePictureShowing: Error while checking: invalid ‘envir’ argument
    broad_subPathwayGraph: no visible global function definition for
     ‘read.table’
    broad_subPathwayGraph: no visible global function definition for
     ‘read.delim’
    broad_subPathwayGraph: Error while checking: invalid ‘envir’ argument
    broad_subPathwayMinner: no visible global function definition for
     ‘read.table’
    broad_subPathwayMinner: Error while checking: invalid ‘envir’ argument
    broad_zhenghe: no visible global function definition for ‘read.delim’
    broad_zhenghe: no visible global function definition for ‘read.table’
    broad_zhenghe: no visible global function definition for ‘write.table’
    depth_OnePictureShowing: no visible global function definition for
     ‘read.table’
    depth_OnePictureShowing: no visible global function definition for
     ‘read.delim’
    depth_OnePictureShowing: Error while checking: invalid ‘envir’ argument
    depth_subPathwayGraph: no visible global function definition for
     ‘read.table’
    depth_subPathwayGraph: no visible global function definition for
     ‘read.delim’
    depth_subPathwayGraph: Error while checking: invalid ‘envir’ argument
    depth_subPathwayMinner: no visible global function definition for
     ‘read.table’
    depth_subPathwayMinner: no visible global function definition for
     ‘phyper’
    depth_subPathwayMinner: no visible global function definition for ‘new’
    depth_subPathwayMinner: no visible global function definition for
     ‘isAdjacent’
    depth_subPathwayMinner: no visible global function definition for
     ‘addEdge’
    depth_subPathwayMinner: no visible global function definition for
     ‘connComp’
    depth_subPathwayMinner: no visible global function definition for
     ‘write.table’
    depth_zhenghe: no visible global function definition for ‘read.delim’
    depth_zhenghe: no visible global function definition for ‘read.table’
    depth_zhenghe: no visible global function definition for ‘write.table’
    fPathway: no visible global function definition for ‘write.table’
    getAllSubpathway: no visible global function definition for
     ‘read.table’
    getData: no visible global function definition for ‘xmlRoot’
    getData: no visible global function definition for ‘xmlTreeParse’
    getData: no visible global function definition for ‘xmlName’
    getData: no visible global function definition for ‘xmlAttrs’
    getData: no visible global function definition for ‘write.table’
    getData: no visible global function definition for ‘xmlChildren’
    getData: no visible global function definition for ‘new’
    getData: no visible global function definition for ‘isAdjacent’
    getData: no visible global function definition for ‘addEdge’
    getData: no visible global function definition for ‘edges’
    getData: no visible global function definition for ‘connComp’
    getData: no visible global function definition for ‘dfs’
    getData: no visible global function definition for ‘sp.between’
    getData: no visible global function definition for ‘bfs’
    getNodesNum: no visible global function definition for ‘xmlRoot’
    getNodesNum: no visible global function definition for ‘xmlTreeParse’
    getNodesNum: no visible global function definition for ‘xmlName’
    getNodesNum: no visible global function definition for ‘xmlAttrs’
    getNodesNum: no visible global function definition for ‘xmlChildren’
    inputInterestGene: no visible global function definition for
     ‘read.table’
    networkShowing_geneSymbol: no visible global function definition for
     ‘read.table’
    networkShowing_geneSymbol: no visible global function definition for
     ‘graph.data.frame’
    networkShowing_geneSymbol: no visible global function definition for
     ‘tkplot’
    networkShowing_geneSymbol: no visible global function definition for
     ‘V’
    networkShowing_hsa: no visible global function definition for
     ‘read.table’
    networkShowing_hsa: no visible global function definition for
     ‘graph.data.frame’
    networkShowing_hsa: no visible global function definition for ‘tkplot’
    networkShowing_hsa: no visible global function definition for ‘V’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    ErgodicPathShowing: no visible global function definition for
     ‘graph.data.frame’
    ErgodicPathShowing: no visible global function definition for ‘tkplot’
    broad_OnePictureShowing: no visible global function definition for
     ‘readPNG’
    broad_subPathwayGraph: no visible global function definition for
     ‘readPNG’
    depth_OnePictureShowing: no visible global function definition for
     ‘readPNG’
    depth_subPathwayGraph: no visible global function definition for
     ‘readPNG’
    depth_subPathwayMinner: no visible global function definition for
     ‘isAdjacent’
    depth_subPathwayMinner: no visible global function definition for
     ‘addEdge’
    depth_subPathwayMinner: no visible global function definition for
     ‘connComp’
    getData: no visible global function definition for ‘xmlRoot’
    getData: no visible global function definition for ‘xmlTreeParse’
    getData: no visible global function definition for ‘xmlName’
    getData: no visible global function definition for ‘xmlAttrs’
    getData: no visible global function definition for ‘xmlChildren’
    getData: no visible global function definition for ‘isAdjacent’
    getData: no visible global function definition for ‘addEdge’
    getData: no visible global function definition for ‘edges’
    getData: no visible global function definition for ‘connComp’
    getData: no visible global function definition for ‘dfs’
    getData: no visible global function definition for ‘sp.between’
    getData: no visible global function definition for ‘bfs’
    getNodesNum: no visible global function definition for ‘xmlRoot’
    getNodesNum: no visible global function definition for ‘xmlTreeParse’
    getNodesNum: no visible global function definition for ‘xmlName’
    getNodesNum: no visible global function definition for ‘xmlAttrs’
    getNodesNum: no visible global function definition for ‘xmlChildren’
    networkShowing_geneSymbol: no visible global function definition for
     ‘graph.data.frame’
    networkShowing_geneSymbol: no visible global function definition for
     ‘tkplot’
    networkShowing_geneSymbol: no visible global function definition for
     ‘V’
    networkShowing_hsa: no visible global function definition for
     ‘graph.data.frame’
    networkShowing_hsa: no visible global function definition for ‘tkplot’
    networkShowing_hsa: no visible global function definition for ‘V’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘EBImage’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks