CRAN Package Check Results for Package STARSEQ

Last updated on 2014-09-20 03:48:54.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.02 2.54 15.41 17.95 NOTE
r-devel-linux-x86_64-debian-gcc 1.02 3.07 15.89 18.96 NOTE
r-devel-linux-x86_64-fedora-clang 1.02 28.26 NOTE
r-devel-linux-x86_64-fedora-gcc 1.02 26.56 NOTE
r-devel-osx-x86_64-clang 1.02 32.24 NOTE
r-devel-windows-ix86+x86_64 1.02 13.00 33.00 46.00 NOTE
r-patched-linux-x86_64 1.02 3.10 15.57 18.68 NOTE
r-patched-solaris-sparc 1.02 182.70 NOTE
r-patched-solaris-x86 1.02 43.70 NOTE
r-release-linux-ix86 1.02 4.74 22.01 26.76 NOTE
r-release-linux-x86_64 1.02 3.20 15.97 19.16 NOTE
r-release-osx-x86_64-mavericks 1.02 NOTE
r-release-osx-x86_64-snowleopard 1.02 OK
r-release-windows-ix86+x86_64 1.02 16.00 36.00 52.00 NOTE
r-oldrel-windows-ix86+x86_64 1.02 13.00 37.00 50.00 NOTE

Check Details

Version: 1.02
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘CompQuadForm’ ‘numDeriv’ ‘vcf2geno’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.02
Check: R code for possible problems
Result: NOTE
    mySKAT: no visible global function definition for ‘davies’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.02
Check: Rd line widths
Result: NOTE
    Rd file 'STAR.test.Rd':
     \usage lines wider than 90 characters:
     STAR.test(dat.ped, y2.vec, covar.mat, rv.count.cutoff, maf.vec, maf.cutoff, pct.upper, pct.lower, yub, ylb, no.perm = 1000, method = "C ... [TRUNCATED]
    
    Rd file 'cmc.uniqtl.pop.Rd':
     \usage lines wider than 90 characters:
     cmc.uniqtl.pop(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    Rd file 'fit.null.2nd.ex.full.pleiomap.Rd':
     \usage lines wider than 90 characters:
     fit.null.2nd.ex.full.pleiomap(marker, rv.count.cutoff, covar.mat, y1.vec, y2.vec, yub, ylb, pct.upper, pct.lower, Nub, Nlb)
    
    Rd file 'kbac.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     kbac.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    Rd file 'minus.L0.2nd.ex.full.pleiomap.Rd':
     \usage lines wider than 90 characters:
     minus.L0.2nd.ex.full.pleiomap(pars, marker, covar.mat, y1.vec, y2.vec, yub, ylb, pct.upper, pct.lower, Nub, Nlb)
    
    Rd file 'vt.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     vt.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = c("two.sided","greater","less"))
    
    Rd file 'wss.lin.simple.C.Rd':
     \usage lines wider than 90 characters:
     wss.lin.simple.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = c("two.sided", "greater", "less"))
    
    Rd file 'wss.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     wss.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.02
Check: compiled code
Result: NOTE
    File ‘STARSEQ/libs/STARSEQ.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘genericPerm.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc

Version: 1.02
Check: compiled code
Result: NOTE
    File 'STARSEQ/libs/i386/STARSEQ.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'genericPerm.o'
    File 'STARSEQ/libs/x64/STARSEQ.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'genericPerm.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64