CRAN Package Check Results for Package STARSEQ

Last updated on 2014-11-01 13:50:02.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-release-linux-ix86 1.02 4.41 21.83 26.24 NOTE
r-release-linux-x86_64 1.02 3.24 15.67 18.90 NOTE

Check Details

Version: 1.02
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘CompQuadForm’ ‘numDeriv’ ‘vcf2geno’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64

Version: 1.02
Check: Rd line widths
Result: NOTE
    Rd file 'STAR.test.Rd':
     \usage lines wider than 90 characters:
     STAR.test(dat.ped, y2.vec, covar.mat, rv.count.cutoff, maf.vec, maf.cutoff, pct.upper, pct.lower, yub, ylb, no.perm = 1000, method = "C ... [TRUNCATED]
    
    Rd file 'cmc.uniqtl.pop.Rd':
     \usage lines wider than 90 characters:
     cmc.uniqtl.pop(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    Rd file 'fit.null.2nd.ex.full.pleiomap.Rd':
     \usage lines wider than 90 characters:
     fit.null.2nd.ex.full.pleiomap(marker, rv.count.cutoff, covar.mat, y1.vec, y2.vec, yub, ylb, pct.upper, pct.lower, Nub, Nlb)
    
    Rd file 'kbac.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     kbac.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    Rd file 'minus.L0.2nd.ex.full.pleiomap.Rd':
     \usage lines wider than 90 characters:
     minus.L0.2nd.ex.full.pleiomap(pars, marker, covar.mat, y1.vec, y2.vec, yub, ylb, pct.upper, pct.lower, Nub, Nlb)
    
    Rd file 'vt.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     vt.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = c("two.sided","greater","less"))
    
    Rd file 'wss.lin.simple.C.Rd':
     \usage lines wider than 90 characters:
     wss.lin.simple.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = c("two.sided", "greater", "less"))
    
    Rd file 'wss.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     wss.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    These lines will be truncated in the PDF manual.
Flavor: r-release-linux-x86_64