CRAN Package Check Results for Package STARSEQ

Last updated on 2014-04-24 03:47:55.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.02 2.84 18.63 21.47 NOTE
r-devel-linux-x86_64-debian-gcc 1.02 3.48 17.78 21.26 NOTE
r-devel-linux-x86_64-fedora-clang 1.02 29.31 NOTE
r-devel-linux-x86_64-fedora-gcc 1.02 27.60 NOTE
r-devel-osx-x86_64-clang 1.02 31.68 NOTE
r-devel-osx-x86_64-gcc 1.02 NOTE
r-devel-windows-ix86+x86_64 1.02 13.00 38.00 51.00 NOTE
r-patched-linux-x86_64 1.02 3.44 18.15 21.59 NOTE
r-patched-solaris-sparc 1.02 165.70 NOTE
r-patched-solaris-x86 1.02 40.80 NOTE
r-release-linux-ix86 1.02 6.00 32.00 38.00 NOTE
r-release-linux-x86_64 1.02 3.51 19.68 23.18 NOTE
r-release-osx-x86_64-mavericks 1.02 WARN
r-release-osx-x86_64-snowleopard 1.02 OK
r-release-windows-ix86+x86_64 1.02 19.00 47.00 66.00 NOTE
r-oldrel-windows-ix86+x86_64 1.02 13.00 37.00 50.00 NOTE

Check Details

Version: 1.02
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘CompQuadForm’ ‘numDeriv’ ‘vcf2geno’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.02
Check: Rd line widths
Result: NOTE
    Rd file 'STAR.test.Rd':
     \usage lines wider than 90 characters:
     STAR.test(dat.ped, y2.vec, covar.mat, rv.count.cutoff, maf.vec, maf.cutoff, pct.upper, pct.lower, yub, ylb, no.perm = 1000, method = "C ... [TRUNCATED]
    
    Rd file 'cmc.uniqtl.pop.Rd':
     \usage lines wider than 90 characters:
     cmc.uniqtl.pop(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    Rd file 'fit.null.2nd.ex.full.pleiomap.Rd':
     \usage lines wider than 90 characters:
     fit.null.2nd.ex.full.pleiomap(marker, rv.count.cutoff, covar.mat, y1.vec, y2.vec, yub, ylb, pct.upper, pct.lower, Nub, Nlb)
    
    Rd file 'kbac.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     kbac.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    Rd file 'minus.L0.2nd.ex.full.pleiomap.Rd':
     \usage lines wider than 90 characters:
     minus.L0.2nd.ex.full.pleiomap(pars, marker, covar.mat, y1.vec, y2.vec, yub, ylb, pct.upper, pct.lower, Nub, Nlb)
    
    Rd file 'vt.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     vt.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = c("two.sided","greater","less"))
    
    Rd file 'wss.lin.simple.C.Rd':
     \usage lines wider than 90 characters:
     wss.lin.simple.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = c("two.sided", "greater", "less"))
    
    Rd file 'wss.uniqtl.pop.C.Rd':
     \usage lines wider than 90 characters:
     wss.uniqtl.pop.C(dat.ped, par.dat, maf.vec, maf.cutoff, no.perm = 1000, alternative = "greater")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.02
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    79f4111/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks