CRAN Package Check Results for Package SourceSet

Last updated on 2019-10-23 06:47:59 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.3 3.68 126.52 130.20 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.3 2.75 100.72 103.47 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.3 156.90 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.3 157.42 NOTE
r-devel-windows-ix86+x86_64 0.1.3 9.00 113.00 122.00 NOTE
r-patched-linux-x86_64 0.1.3 3.57 122.35 125.92 NOTE
r-patched-solaris-x86 0.1.3 79.60 WARN
r-release-linux-x86_64 0.1.3 2.67 123.78 126.45 NOTE
r-release-windows-ix86+x86_64 0.1.3 14.00 181.00 195.00 NOTE
r-release-osx-x86_64 0.1.3 WARN
r-oldrel-windows-ix86+x86_64 0.1.3 8.00 191.00 199.00 NOTE
r-oldrel-osx-x86_64 0.1.3 WARN

Check Details

Version: 0.1.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'r2cytoscape'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘SourceSet.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect,
     is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
     pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
     setdiff, sort, table, tapply, union, unique, unsplit, which,
     which.max, which.min
    
    Identifing all possible orderings..
    Total run time: 2.44 secs
    Identifing all possible orderings..
    Total run time: 1.22 secs
    Quitting from lines 346-347 (SourceSet.Rmd)
    Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘SourceSet.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘SourceSet.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'r2cytoscape', 'BiocStyle', 'hgu95av2.db', 'ALL', 'org.Hs.eg.db'
Flavor: r-release-osx-x86_64

Version: 0.1.3
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘ALL’
Flavor: r-release-osx-x86_64

Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘SourceSet.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect,
     is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
     pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
     setdiff, sort, table, tapply, union, unique, unsplit, which,
     which.max, which.min
    
    Identifing all possible orderings..
    Total run time: 1.46 secs
    Identifing all possible orderings..
    Total run time: 0.79 secs
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="webshot1036025ae8906.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshot1036025ae8906.png': No such file or directory
    Quitting from lines 346-347 (SourceSet.Rmd)
    Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘SourceSet.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘SourceSet.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.1.3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘r2cytoscape’ ‘BiocStyle’ ‘graphite’ ‘hgu95av2.db’
Flavor: r-oldrel-osx-x86_64

Version: 0.1.3
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘graphite’
Flavor: r-oldrel-osx-x86_64

Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    Identifing all possible orderings..
    Total run time: 1.42 secs
    Identifing all possible orderings..
    Total run time: 0.88 secs
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="webshotaa8d67b04631.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshotaa8d67b04631.png': No such file or directory
    Quitting from lines 346-347 (SourceSet.Rmd)
    Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64