CRAN Package Check Results for Package SpatialExtremes

Last updated on 2016-09-25 15:49:05.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-2 12.85 117.08 129.94 NOTE
r-devel-linux-x86_64-debian-gcc 2.0-2 13.69 111.10 124.79 NOTE
r-devel-linux-x86_64-fedora-clang 2.0-2 220.95 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0-2 207.23 NOTE
r-devel-macos-x86_64-clang 2.0-2 135.25 NOTE
r-devel-windows-ix86+x86_64 2.0-2 58.00 136.00 194.00 ERROR
r-patched-linux-x86_64 2.0-2 12.79 110.43 123.21 NOTE
r-patched-solaris-sparc 2.0-2 1235.40 NOTE
r-patched-solaris-x86 2.0-2 220.40 NOTE
r-release-linux-x86_64 2.0-2 12.63 110.92 123.55 NOTE
r-release-osx-x86_64-mavericks 2.0-2 NOTE
r-release-windows-ix86+x86_64 2.0-2 48.00 288.00 336.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0-2 81.00 279.00 360.00 OK

Check Details

Version: 2.0-2
Check: R code for possible problems
Result: NOTE
    .brownresnickstderr: no visible global function definition for ‘var’
    .extremaltstderr: no visible global function definition for ‘var’
    .geomgaussstderr: no visible global function definition for ‘var’
    .getTrendSurfCoeffNames: no visible global function definition for
     ‘terms’
    .schlatherindstderr: no visible global function definition for ‘var’
    .schlatherstderr: no visible global function definition for ‘var’
    .smithstderr: no visible global function definition for ‘var’
    .spatgevstderr: no visible global function definition for ‘var’
    .start.brownresnick: no visible global function definition for
     ‘predict’
    .start.extremalt: no visible global function definition for ‘predict’
    .start.geomgauss: no visible global function definition for ‘predict’
    .start.nsgeomgauss: no visible global function definition for ‘terms’
    .start.nsgeomgauss: no visible global function definition for ‘predict’
    .start.schlather: no visible global function definition for ‘predict’
    .start.schlatherind: no visible global function definition for
     ‘predict’
    .start.smith: no visible global function definition for ‘predict’
    TIC.default: no visible global function definition for ‘deviance’
    anova.maxstab: no visible global function definition for ‘fitted’
    anova.maxstab: no visible global function definition for ‘deviance’
    anova.maxstab: no visible global function definition for ‘pchisq’
    anova.spatgev: no visible global function definition for ‘fitted’
    anova.spatgev: no visible global function definition for ‘deviance’
    anova.spatgev: no visible global function definition for ‘pchisq’
    brownresnickform: no visible global function definition for ‘update’
    brownresnickform: no visible global function definition for ‘nlminb’
    brownresnickform: no visible global function definition for ‘nlm’
    brownresnickform: no visible global function definition for ‘optim’
    brownresnickform : ext.coeff: no visible global function definition for
     ‘pnorm’
    brownresnickform : conc.prob: no visible global function definition for
     ‘rnorm’
    brownresnickform : conc.prob: no visible global function definition for
     ‘pnorm’
    brownresnickfull: no visible global function definition for ‘nlminb’
    brownresnickfull: no visible global function definition for ‘nlm’
    brownresnickfull: no visible global function definition for ‘optim’
    brownresnickfull : ext.coeff: no visible global function definition for
     ‘pnorm’
    brownresnickfull : conc.prob: no visible global function definition for
     ‘rnorm’
    brownresnickfull : conc.prob: no visible global function definition for
     ‘pnorm’
    concprob: no visible global function definition for ‘quantile’
    concprob: no visible global function definition for ‘points’
    concprob: no visible global function definition for ‘curve’
    concurrencemap: no visible global function definition for ‘cm.colors’
    concurrencemap: no visible global function definition for ‘layout’
    concurrencemap: no visible global function definition for ‘image’
    concurrencemap: no visible global function definition for ‘par’
    concurrencemap: no visible global function definition for ‘plot.new’
    concurrencemap: no visible global function definition for ‘plot.window’
    concurrencemap: no visible global function definition for ‘rect’
    concurrencemap: no visible global function definition for ‘axis’
    concurrencemap: no visible global function definition for ‘box’
    condmap: no visible global function definition for ‘terrain.colors’
    condmap: no visible global function definition for ‘predict’
    condmap : cond.prob: no visible global function definition for ‘pnorm’
    condmap: no visible global function definition for ‘uniroot’
    condmap: no visible global function definition for ‘image’
    condmap: no visible global function definition for ‘contour’
    covariance: no visible global function definition for ‘optimize’
    covariance: no visible global function definition for ‘points’
    cv: no visible global function definition for ‘nlm’
    cv: no visible global function definition for ‘sd’
    extcoeff : extCoeff: no visible global function definition for ‘pnorm’
    extcoeff: no visible global function definition for ‘optimize’
    extcoeff: no visible global function definition for ‘contour’
    extremaltform: no visible global function definition for ‘update’
    extremaltform: no visible global function definition for ‘nlminb’
    extremaltform: no visible global function definition for ‘nlm’
    extremaltform: no visible global function definition for ‘optim’
    extremaltform : ext.coeff: no visible global function definition for
     ‘pt’
    extremaltform : conc.prob: no visible global function definition for
     ‘pt’
    extremaltfull: no visible global function definition for ‘nlminb’
    extremaltfull: no visible global function definition for ‘nlm’
    extremaltfull: no visible global function definition for ‘optim’
    extremaltfull : ext.coeff: no visible global function definition for
     ‘pt’
    extremaltfull : conc.prob: no visible global function definition for
     ‘pt’
    fitcopula: no visible global function definition for ‘update’
    fitcopula: no visible global function definition for ‘nlminb’
    fitcopula: no visible global function definition for ‘nlm’
    fitcopula: no visible global function definition for ‘optim’
    fitcopula : ext.coeff: no visible global function definition for ‘pt’
    fitcovariance: no visible global function definition for ‘optim’
    fitcovariance : ext.coeff: no visible global function definition for
     ‘pt’
    fitcovariance : ext.coeff: no visible global function definition for
     ‘pnorm’
    fitcovmat: no visible global function definition for ‘qnorm’
    fitcovmat: no visible global function definition for ‘optim’
    fitcovmat : ext.coeff: no visible global function definition for
     ‘pnorm’
    fitextcoeff: no visible global function definition for ‘optimize’
    fitextcoeff: no visible global function definition for ‘ppoints’
    fitextcoeff: no visible binding for global variable ‘var’
    fitextcoeff: no visible global function definition for ‘par’
    fitextcoeff: no visible global function definition for ‘lines’
    fitextcoeff: no visible global function definition for ‘predict’
    fitextcoeff: no visible global function definition for ‘points’
    fitspatgev: no visible global function definition for ‘update’
    fitspatgev: no visible global function definition for ‘nlminb’
    fitspatgev: no visible global function definition for ‘nlm’
    fitspatgev: no visible global function definition for ‘optim’
    fmadogram: no visible global function definition for ‘predict’
    fmadogram: no visible global function definition for ‘quantile’
    fmadogram: no visible global function definition for ‘par’
    fmadogram: no visible global function definition for ‘points’
    fmadogram: no visible global function definition for ‘curve’
    fmadogram: no visible global function definition for ‘plot’
    gcv: no visible global function definition for ‘nlm’
    gcv: no visible global function definition for ‘sd’
    geomgaussform: no visible global function definition for ‘update’
    geomgaussform: no visible global function definition for ‘nlminb’
    geomgaussform: no visible global function definition for ‘nlm’
    geomgaussform: no visible global function definition for ‘optim’
    geomgaussform : ext.coeff: no visible global function definition for
     ‘pnorm’
    geomgaussfull: no visible global function definition for ‘nlminb’
    geomgaussfull: no visible global function definition for ‘nlm’
    geomgaussfull: no visible global function definition for ‘optim’
    geomgaussfull : ext.coeff: no visible global function definition for
     ‘pnorm’
    gevmle: no visible global function definition for ‘var’
    gevmle: no visible global function definition for ‘optim’
    gpdmle: no visible global function definition for ‘optim’
    kriging: no visible global function definition for ‘dist’
    latent: no visible global function definition for ‘dist’
    latent: no visible global function definition for ‘update’
    lmadogram: no visible global function definition for ‘terrain.colors’
    lmadogram: no visible global function definition for ‘quantile’
    lmadogram: no visible global function definition for ‘persp’
    logLik.copula: no visible global function definition for ‘fitted’
    logLik.maxstab: no visible global function definition for ‘fitted’
    madogram: no visible global function definition for ‘predict’
    madogram: no visible global function definition for ‘quantile’
    madogram: no visible global function definition for ‘par’
    madogram: no visible global function definition for ‘points’
    madogram: no visible global function definition for ‘curve’
    madogram: no visible global function definition for ‘plot’
    map: no visible global function definition for ‘terrain.colors’
    map: no visible global function definition for ‘predict’
    map: no visible global function definition for ‘image’
    map: no visible global function definition for ‘contour’
    map.latent: no visible global function definition for ‘terrain.colors’
    map.latent: no visible binding for global variable ‘quantile’
    map.latent: no visible global function definition for ‘par’
    map.latent: no visible global function definition for ‘layout’
    map.latent: no visible global function definition for ‘image’
    map.latent: no visible global function definition for ‘contour’
    map.latent: no visible global function definition for ‘points’
    map.latent: no visible global function definition for ‘plot.new’
    map.latent: no visible global function definition for ‘plot.window’
    map.latent: no visible global function definition for ‘rect’
    map.latent: no visible global function definition for ‘axis’
    map.latent: no visible global function definition for ‘box’
    modeldef.lm : init.fun: no visible global function definition for ‘lm’
    modeldef.lm: no visible global function definition for ‘model.matrix’
    plot.copula: no visible global function definition for ‘par’
    plot.copula: no visible global function definition for ‘layout’
    plot.copula: no visible global function definition for ‘predict’
    plot.copula: no visible binding for global variable ‘quantile’
    plot.copula: no visible global function definition for ‘matplot’
    plot.copula: no visible global function definition for ‘curve’
    plot.copula: no visible global function definition for ‘points’
    plot.copula: no visible global function definition for ‘abline’
    plot.copula: no visible global function definition for ‘legend’
    plot.copula: no visible global function definition for ‘plot’
    plot.maxstab: no visible global function definition for ‘par’
    plot.maxstab: no visible global function definition for ‘layout’
    plot.maxstab: no visible global function definition for ‘predict’
    plot.maxstab: no visible global function definition for ‘na.omit’
    plot.maxstab: no visible binding for global variable ‘quantile’
    plot.maxstab: no visible global function definition for ‘matplot’
    plot.maxstab: no visible global function definition for ‘curve’
    plot.maxstab: no visible global function definition for ‘points’
    plot.maxstab: no visible global function definition for ‘plot’
    plot.maxstab: no visible global function definition for ‘text’
    plot.maxstab: no visible global function definition for ‘abline’
    plot.maxstab: no visible global function definition for ‘legend’
    print.copula: no visible global function definition for ‘AIC’
    print.latent: no visible binding for global variable ‘quantile’
    profile.maxstab: no visible global function definition for ‘optim’
    profile.maxstab: no visible global function definition for ‘qchisq’
    profile.maxstab: no visible global function definition for ‘abline’
    profile2d.maxstab: no visible global function definition for ‘optim’
    profile2d.maxstab: no visible global function definition for
     ‘filled.contour’
    qqextcoeff: no visible global function definition for ‘plot’
    qqextcoeff: no visible global function definition for ‘abline’
    qqgev: no visible global function definition for ‘predict’
    qqgev: no visible global function definition for ‘par’
    qqgev: no visible global function definition for ‘plot’
    qqgev: no visible global function definition for ‘abline’
    qqgev: no visible global function definition for ‘hist’
    qqgev: no visible global function definition for ‘axis’
    rb: no visible global function definition for ‘dist’
    rcopula: no visible global function definition for ‘pnorm’
    rcopula: no visible global function definition for ‘rchisq’
    rcopula: no visible global function definition for ‘pt’
    rgev: no visible global function definition for ‘rexp’
    rgpd: no visible global function definition for ‘rexp’
    rgpd: no visible global function definition for ‘runif’
    schlatherform: no visible global function definition for ‘update’
    schlatherform: no visible global function definition for ‘nlminb’
    schlatherform: no visible global function definition for ‘nlm’
    schlatherform: no visible global function definition for ‘optim’
    schlatherfull: no visible global function definition for ‘nlminb’
    schlatherfull: no visible global function definition for ‘nlm’
    schlatherfull: no visible global function definition for ‘optim’
    schlatherindform: no visible global function definition for ‘update’
    schlatherindform: no visible global function definition for ‘nlminb’
    schlatherindform: no visible global function definition for ‘nlm’
    schlatherindform: no visible global function definition for ‘optim’
    schlatherindfull: no visible global function definition for ‘nlminb’
    schlatherindfull: no visible global function definition for ‘nlm’
    schlatherindfull: no visible global function definition for ‘optim’
    smithform: no visible global function definition for ‘update’
    smithform: no visible global function definition for ‘nlminb’
    smithform: no visible global function definition for ‘nlm’
    smithform: no visible global function definition for ‘optim’
    smithform : ext.coeff: no visible global function definition for
     ‘pnorm’
    smithfull: no visible global function definition for ‘nlminb’
    smithfull: no visible global function definition for ‘nlm’
    smithfull: no visible global function definition for ‘optim’
    smithfull : ext.coeff: no visible global function definition for
     ‘pnorm’
    swiss: no visible global function definition for ‘plot’
    swiss: no visible global function definition for ‘lines’
    swiss: no visible global function definition for ‘polygon’
    swiss: no visible global function definition for ‘points’
    swiss: no visible global function definition for ‘text’
    symbolplot: no visible global function definition for ‘layout’
    symbolplot: no visible global function definition for ‘par’
    symbolplot: no visible global function definition for ‘dist’
    symbolplot: no visible global function definition for ‘symbols’
    symbolplot: no visible global function definition for ‘plot’
    symbolplot: no visible global function definition for ‘text’
    symbolplot: no visible binding for global variable ‘median’
    variogram: no visible global function definition for ‘quantile’
    variogram: no visible global function definition for ‘points’
    variogram: no visible global function definition for ‘plot’
    vdc: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     AIC abline axis box cm.colors contour curve deviance dist
     filled.contour fitted hist image layout legend lines lm matplot
     median model.matrix na.omit nlm nlminb optim optimize par pchisq
     persp plot plot.new plot.window pnorm points polygon ppoints predict
     pt qchisq qnorm quantile rchisq rect rexp rnorm runif sd symbols
     terms terrain.colors text uniroot update var
    Consider adding
     importFrom("grDevices", "cm.colors", "terrain.colors")
     importFrom("graphics", "abline", "axis", "box", "contour", "curve",
     "filled.contour", "hist", "image", "layout", "legend",
     "lines", "matplot", "par", "persp", "plot", "plot.new",
     "plot.window", "points", "polygon", "rect", "symbols",
     "text")
     importFrom("stats", "AIC", "deviance", "dist", "fitted", "lm",
     "median", "model.matrix", "na.omit", "nlm", "nlminb",
     "optim", "optimize", "pchisq", "pnorm", "ppoints",
     "predict", "pt", "qchisq", "qnorm", "quantile", "rchisq",
     "rexp", "rnorm", "runif", "sd", "terms", "uniroot",
     "update", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.0-2
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'SpatialExtremes-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: concurrencemap
    > ### Title: Maps of concurrence probabilities/expected concurrence cell area
    > ### Aliases: concurrencemap
    > ### Keywords: hplot
    >
    > ### ** Examples
    >
    > require(maps)
    Loading required package: maps
    
    Attaching package: 'maps'
    
    The following object is masked from 'package:SpatialExtremes':
    
     map
    
    > data(USHCNTemp)
    > coord <- as.matrix(metadata[,2:3])
    >
    > ## Subset the station to have a fast example
    > n.site <- 30
    > chosen.site <- sample(nrow(coord), n.site)
    > coord <- coord[chosen.site,]
    > maxima.summer <- maxima.summer[,chosen.site]
    >
    > ## Define a function to plot the border
    > border <- function(add = FALSE) maps::map("usa", add = add)
    >
    > par(mar = rep(0, 4))
    > ## Produce a pairwise concurrence probability map w.r.t. station number 15
    > concurrencemap(maxima.summer, coord, type = 15, plot.border = border)
    At line 40 of file dcopy.f
    Fortran runtime error: Index '2' of dimension 1 of array 'dy' above upper bound of 1
Flavor: r-devel-windows-ix86+x86_64

Version: 2.0-2
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'SpatialExtremes-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: concurrencemap
    > ### Title: Maps of concurrence probabilities/expected concurrence cell area
    > ### Aliases: concurrencemap
    > ### Keywords: hplot
    >
    > ### ** Examples
    >
    > require(maps)
    Loading required package: maps
    
    Attaching package: 'maps'
    
    The following object is masked from 'package:SpatialExtremes':
    
     map
    
    > data(USHCNTemp)
    > coord <- as.matrix(metadata[,2:3])
    >
    > ## Subset the station to have a fast example
    > n.site <- 30
    > chosen.site <- sample(nrow(coord), n.site)
    > coord <- coord[chosen.site,]
    > maxima.summer <- maxima.summer[,chosen.site]
    >
    > ## Define a function to plot the border
    > border <- function(add = FALSE) maps::map("usa", add = add)
    >
    > par(mar = rep(0, 4))
    > ## Produce a pairwise concurrence probability map w.r.t. station number 15
    > concurrencemap(maxima.summer, coord, type = 15, plot.border = border)
    At line 40 of file dcopy.f
    Fortran runtime error: Index '2' of dimension 1 of array 'dy' above upper bound of 1
Flavor: r-devel-windows-ix86+x86_64