CRAN Package Check Results for Package StAMPP

Last updated on 2015-04-28 12:47:39.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3 1.87 27.16 29.04 OK
r-devel-linux-x86_64-debian-gcc 1.3 1.82 26.51 28.33 OK
r-devel-linux-x86_64-fedora-clang 1.3 58.35 OK
r-devel-linux-x86_64-fedora-gcc 1.3 53.69 OK
r-devel-osx-x86_64-clang 1.3 54.00 OK
r-devel-windows-ix86+x86_64 1.3 7.00 43.00 50.00 OK
r-patched-linux-x86_64 1.3 2.36 26.53 28.89 OK
r-patched-solaris-sparc 1.3 385.50 ERROR
r-patched-solaris-x86 1.3 87.00 OK
r-release-linux-x86_64 1.3 1.84 26.48 28.32 OK
r-release-osx-x86_64-mavericks 1.3 OK
r-release-osx-x86_64-snowleopard 1.3 ERROR
r-release-windows-ix86+x86_64 1.3 7.00 50.00 57.00 OK
r-oldrel-windows-ix86+x86_64 1.3 15.00 79.00 94.00 OK

Check Details

Version: 1.3
Check: examples
Result: ERROR
    Running examples in ‘StAMPP-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: stampp2genlight
    > ### Title: Convert StAMPP genotype data to genlight object
    > ### Aliases: stampp2genlight
    >
    > ### ** Examples
    >
    > # import genotype data and convert to allele frequecies
    > data(potato.mini, package="StAMPP")
    > potato.freq <- stamppConvert(potato.mini, "r")
    >
    > # Convert the StAMPP formatted allele frequency data frame to a genlight object
    > potato.genlight <- stampp2genlight(potato.freq, TRUE)
    
     *** caught segfault ***
    address 3400000, cause 'memory not mapped'
Flavor: r-patched-solaris-sparc

Version: 1.3
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘pegas’ ‘adegenet’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard