CRAN Package Check Results for Package StatDA

Last updated on 2019-12-14 18:46:47 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7 22.88 166.52 189.40 ERROR
r-devel-linux-x86_64-debian-gcc 1.7 17.25 136.14 153.39 OK
r-devel-linux-x86_64-fedora-clang 1.7 250.89 OK
r-devel-linux-x86_64-fedora-gcc 1.7 259.74 OK
r-devel-windows-ix86+x86_64 1.7 35.00 265.00 300.00 OK
r-devel-windows-ix86+x86_64-gcc8 1.7 40.00 259.00 299.00 OK
r-patched-linux-x86_64 1.7 17.72 160.67 178.39 OK
r-patched-solaris-x86 1.7 385.20 OK
r-release-linux-x86_64 1.7 18.14 161.18 179.32 OK
r-release-windows-ix86+x86_64 1.7 30.00 171.00 201.00 OK
r-release-osx-x86_64 1.7 WARN
r-oldrel-windows-ix86+x86_64 1.7 21.00 160.00 181.00 OK
r-oldrel-osx-x86_64 1.7 OK

Check Details

Version: 1.7
Check: examples
Result: ERROR
    Running examples in 'StatDA-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: tree
    > ### Title: Plot Trees
    > ### Aliases: tree
    > ### Keywords: tree multivariate
    >
    > ### ** Examples
    >
    > data(ohorizon)
    > X=ohorizon[,"XCOO"]
    > Y=ohorizon[,"YCOO"]
    > el=log10(ohorizon[,c("Co","Cu","Ni","Rb","Bi","Na","Sr")])
    > sel <- c(3,8,22, 29, 32, 35, 43, 69, 73 ,93,109,129,130,134,168,181,183,205,211,
    + 218,237,242,276,292,297,298,345,346,352,372,373,386,408,419,427,441,446,490,
    + 516,535,551,556,558,564,577,584,601,612,617)
    > x=el[sel,]
    >
    > tree(x,key.loc=c(15,0),len=0.022, lh=30,leglh=4,
    + wmax=120,wmin=30, leglen=0.05, ncol=8, cex=0.75)
     ----------- FAILURE REPORT --------------
     --- failure: the condition has length > 1 ---
     --- srcref ---
    :
     --- package (from environment) ---
    StatDA
     --- call from context ---
    .local(x, y, ...)
     --- call from argument ---
    if ((class(leg) != "NULL") & length(a@El) == 1) {
     text(xy.coords(points[2, 1], points[2, 2]), colnames(leg)[a@El],
     cex = 0.8, adj = c(0.3, -0.2))
    }
     --- R stacktrace ---
    where 1: .local(x, y, ...)
    where 2: plot(a, xleg, yleg, leglen, leglh, bcl)
    where 3: plot(a, xleg, yleg, leglen, leglh, bcl)
    where 4: tree(x, key.loc = c(15, 0), len = 0.022, lh = 30, leglh = 4,
     wmax = 120, wmin = 30, leglen = 0.05, ncol = 8, cex = 0.75)
    
     --- value of length: 2 type: logical ---
    [1] FALSE FALSE
     --- function from context ---
    function (a, x, y, len = 1, lh = 1, leg = NULL, ...)
    {
     points = matrix(0, nrow = 4, ncol = 2)
     if (a@LR == 0) {
     points[1, 1] = x
     points[1, 2] = y
     points[2, 1] = points[1, 1] - lh * len * a@h * sin(a@w *
     2 * pi/360)
     points[2, 2] = points[1, 2] + lh * len * a@h * cos(a@w *
     2 * pi/360)
     points[3, 1] = points[2, 1] + len * length(a@El)
     points[3, 2] = points[2, 2]
     points[4, 1] = points[1, 1] + len * length(a@El)
     points[4, 2] = points[1, 2]
     polygon(points)
     if ((class(leg) != "NULL") & length(a@El) == 1) {
     text(xy.coords(points[2, 1], points[2, 2]), colnames(leg)[a@El],
     cex = 0.8, adj = c(0.3, -0.2))
     }
     }
     if (a@LR == 1) {
     points[1, 1] = x
     points[1, 2] = y
     points[2, 1] = points[1, 1] + lh * len * a@h * sin(a@w *
     2 * pi/360)
     points[2, 2] = points[1, 2] + lh * len * a@h * cos(a@w *
     2 * pi/360)
     points[3, 1] = points[2, 1] + len * length(a@El)
     points[3, 2] = points[2, 2]
     points[4, 1] = points[1, 1] + len * length(a@El)
     points[4, 2] = points[1, 2]
     polygon(points)
     if ((class(leg) != "NULL") & length(a@El) == 1) {
     text(xy.coords(points[2, 1], points[2, 2]), colnames(leg)[a@El],
     cex = 0.8, adj = c(0, -0.2))
     }
     }
     if (class(a@LeafL) != "NULL") {
     if (a@LR == 0)
     plot(a@LeafL, x - lh * len * a@h * sin(a@w * 2 *
     pi/360), y + lh * len * a@h * cos(a@w * 2 * pi/360),
     len, lh, leg)
     if (a@LR == 1)
     plot(a@LeafL, x + lh * len * a@h * sin(a@w * 2 *
     pi/360), y + lh * len * a@h * cos(a@w * 2 * pi/360),
     len, lh, leg)
     }
     if (class(a@LeafR) != "NULL") {
     if (a@LR == 0)
     plot(a@LeafR, x - lh * len * a@h * sin(a@w * 2 *
     pi/360) + len * length(a@LeafL@El), y + lh *
     len * a@h * cos(a@w * 2 * pi/360), len, lh, leg)
     if (a@LR == 1)
     plot(a@LeafR, x + lh * len * a@h * sin(a@w * 2 *
     pi/360) + len * length(a@LeafL@El), y + lh *
     len * a@h * cos(a@w * 2 * pi/360), len, lh, leg)
     }
    }
    <bytecode: 0x113c7018>
    <environment: namespace:StatDA>
     --- function search by body ---
     ----------- END OF FAILURE REPORT --------------
    Error in if ((class(leg) != "NULL") & length(a@El) == 1) { :
     the condition has length > 1
    Calls: tree -> plot -> plot -> .local
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.7
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'StatDA.Rnw' using Sweave
    Loading required package: geoR
    --------------------------------------------------------------
     Analysis of Geostatistical Data
     For an Introduction to geoR go to http://www.leg.ufpr.br/geoR
     geoR version 1.7-5.2.1 (built on 2016-05-02) is now loaded
    --------------------------------------------------------------
    
    Loading required package: sgeostat
     ----------- FAILURE REPORT --------------
     --- failure: the condition has length > 1 ---
     --- srcref ---
    :
     --- package (from environment) ---
    StatDA
     --- call from context ---
    .local(x, y, ...)
     --- call from argument ---
    if ((class(leg) != "NULL") & length(a@El) == 1) {
     text(xy.coords(points[2, 1], points[2, 2]), colnames(leg)[a@El],
     cex = 0.8, adj = c(0.3, -0.2))
    }
     --- R stacktrace ---
    where 1: .local(x, y, ...)
    where 2: plot(a, xleg, yleg, leglen, leglh, bcl)
    where 3: plot(a, xleg, yleg, leglen, leglh, bcl)
    where 4: tree(x, locations = cbind(X[sel], Y[sel]), len = 700, key.loc = c(793000,
     7760000), leglen = 1500, cex = 0.75, add = T, leglh = 6,
     lh = 30, wmax = 120, wmin = 30, labels = NULL)
    where 5: eval(expr, .GlobalEnv)
    where 6: eval(expr, .GlobalEnv)
    where 7: withVisible(eval(expr, .GlobalEnv))
    where 8: doTryCatch(return(expr), name, parentenv, handler)
    where 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    where 10: tryCatchList(expr, classes, parentenv, handlers)
    where 11: tryCatch(expr, error = function(e) {
     call <- conditionCall(e)
     if (!is.null(call)) {
     if (identical(call[[1L]], quote(doTryCatch)))
     call <- sys.call(-4L)
     dcall <- deparse(call)[1L]
     prefix <- paste("Error in", dcall, ": ")
     LONG <- 75L
     sm <- strsplit(conditionMessage(e), "\n")[[1L]]
     w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
     if (is.na(w))
     w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
     type = "b")
     if (w > LONG)
     prefix <- paste0(prefix, "\n ")
     }
     else prefix <- "Error : "
     msg <- paste0(prefix, conditionMessage(e), "\n")
     .Internal(seterrmessage(msg[1L]))
     if (!silent && isTRUE(getOption("show.error.messages"))) {
     cat(msg, file = outFile)
     .Internal(printDeferredWarnings())
     }
     invisible(structure(msg, class = "try-error", condition = e))
    })
    where 12: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
    where 13: evalFunc(ce, options)
    where 14: tryCatchList(expr, classes, parentenv, handlers)
    where 15: tryCatch(evalFunc(ce, options), finally = {
     cat("\n")
     sink()
    })
    where 16: driver$runcode(drobj, chunk, chunkopts)
    where 17: utils::Sweave(...)
    where 18: engine$weave(file, quiet = quiet, encoding = enc)
    where 19: doTryCatch(return(expr), name, parentenv, handler)
    where 20: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    where 21: tryCatchList(expr, classes, parentenv, handlers)
    where 22: tryCatch({
     engine$weave(file, quiet = quiet, encoding = enc)
     setwd(startdir)
     output <- find_vignette_product(name, by = "weave", engine = engine)
     if (!have.makefile && vignette_is_tex(output)) {
     texi2pdf(file = output, clean = FALSE, quiet = quiet)
     output <- find_vignette_product(name, by = "texi2pdf",
     engine = engine)
     }
     outputs <- c(outputs, output)
    }, error = function(e) {
     thisOK <<- FALSE
     fails <<- c(fails, file)
     message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
     file, conditionMessage(e)))
    })
    where 23: tools:::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/StatDA.Rcheck/vign_test/StatDA",
     ser_elibs = "/tmp/RtmpmlzjJf/file225943ed4ece.rds")
    
     --- value of length: 2 type: logical ---
    [1] FALSE FALSE
     --- function from context ---
    function (a, x, y, len = 1, lh = 1, leg = NULL, ...)
    {
     points = matrix(0, nrow = 4, ncol = 2)
     if (a@LR == 0) {
     points[1, 1] = x
     points[1, 2] = y
     points[2, 1] = points[1, 1] - lh * len * a@h * sin(a@w *
     2 * pi/360)
     points[2, 2] = points[1, 2] + lh * len * a@h * cos(a@w *
     2 * pi/360)
     points[3, 1] = points[2, 1] + len * length(a@El)
     points[3, 2] = points[2, 2]
     points[4, 1] = points[1, 1] + len * length(a@El)
     points[4, 2] = points[1, 2]
     polygon(points)
     if ((class(leg) != "NULL") & length(a@El) == 1) {
     text(xy.coords(points[2, 1], points[2, 2]), colnames(leg)[a@El],
     cex = 0.8, adj = c(0.3, -0.2))
     }
     }
     if (a@LR == 1) {
     points[1, 1] = x
     points[1, 2] = y
     points[2, 1] = points[1, 1] + lh * len * a@h * sin(a@w *
     2 * pi/360)
     points[2, 2] = points[1, 2] + lh * len * a@h * cos(a@w *
     2 * pi/360)
     points[3, 1] = points[2, 1] + len * length(a@El)
     points[3, 2] = points[2, 2]
     points[4, 1] = points[1, 1] + len * length(a@El)
     points[4, 2] = points[1, 2]
     polygon(points)
     if ((class(leg) != "NULL") & length(a@El) == 1) {
     text(xy.coords(points[2, 1], points[2, 2]), colnames(leg)[a@El],
     cex = 0.8, adj = c(0, -0.2))
     }
     }
     if (class(a@LeafL) != "NULL") {
     if (a@LR == 0)
     plot(a@LeafL, x - lh * len * a@h * sin(a@w * 2 *
     pi/360), y + lh * len * a@h * cos(a@w * 2 * pi/360),
     len, lh, leg)
     if (a@LR == 1)
     plot(a@LeafL, x + lh * len * a@h * sin(a@w * 2 *
     pi/360), y + lh * len * a@h * cos(a@w * 2 * pi/360),
     len, lh, leg)
     }
     if (class(a@LeafR) != "NULL") {
     if (a@LR == 0)
     plot(a@LeafR, x - lh * len * a@h * sin(a@w * 2 *
     pi/360) + len * length(a@LeafL@El), y + lh *
     len * a@h * cos(a@w * 2 * pi/360), len, lh, leg)
     if (a@LR == 1)
     plot(a@LeafR, x + lh * len * a@h * sin(a@w * 2 *
     pi/360) + len * length(a@LeafL@El), y + lh *
     len * a@h * cos(a@w * 2 * pi/360), len, lh, leg)
     }
    }
    <bytecode: 0xe80a4c8>
    <environment: namespace:StatDA>
     --- function search by body ---
     ----------- END OF FAILURE REPORT --------------
    
    Error: processing vignette 'StatDA.Rnw' failed with diagnostics:
     chunk 30 (label = fig14plot)
    Error in if ((class(leg) != "NULL") & length(a@El) == 1) { :
     the condition has length > 1
    
    --- failed re-building 'StatDA.Rnw'
    
    SUMMARY: processing the following file failed:
     'StatDA.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.7
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-release-osx-x86_64