CRAN Package Check Results for Package SynergizeR

Last updated on 2014-04-24 15:50:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2 1.14 14.90 16.04 NOTE
r-devel-linux-x86_64-debian-gcc 0.2 1.11 14.56 15.67 NOTE
r-devel-linux-x86_64-fedora-clang 0.2 32.59 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2 30.94 NOTE
r-devel-osx-x86_64-clang 0.2 30.31 NOTE
r-devel-osx-x86_64-gcc 0.2 NOTE
r-devel-windows-ix86+x86_64 0.2 4.00 25.00 29.00 NOTE
r-patched-linux-x86_64 0.2 1.12 15.06 16.18 NOTE
r-patched-solaris-sparc 0.2 182.10 NOTE
r-patched-solaris-x86 0.2 47.40 NOTE
r-release-linux-ix86 0.2 2.00 31.00 33.00 NOTE
r-release-linux-x86_64 0.2 1.10 14.69 15.79 NOTE
r-release-osx-x86_64-mavericks 0.2 WARN
r-release-osx-x86_64-snowleopard 0.2 NOTE
r-release-windows-ix86+x86_64 0.2 8.00 34.00 42.00 NOTE
r-oldrel-windows-ix86+x86_64 0.2 4.00 25.00 29.00 NOTE

Check Details

Version: 0.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘RCurl’ ‘RJSONIO’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: R code for possible problems
Result: NOTE
    File ‘SynergizeR/R/zzz.r’:
     .onLoad calls:
     packageStartupMessage("\nSynergizeR\n", appendLF = TRUE)
     packageStartupMessage("IMPORTANT: The Synergizer has been designed for bulk translation of identifiers.\nSee http://llama.mshri.on.ca/synergizer/doc/ for the details of usage. ", appendLF = TRUE)
    
    See section ‘Good practice’ in '?.onAttach'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: Rd line widths
Result: NOTE
    Rd file 'available_ranges.Rd':
     \usage lines wider than 90 characters:
     available_ranges(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol")
    
    Rd file 'synergizer.Rd':
     \usage lines wider than 90 characters:
     synergizer(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol", range = "entrezgene", ids = NULL, file = NULL)
     \examples lines wider than 100 characters:
     symbols.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="affy_hg_u95av2", range="hgnc_symbol",ids=c("1939_at ... [TRUNCATED]
     entrez.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="hgnc_symbol", range="entrezgene",ids=c("snph", "pja1 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    2a1e83f/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks