CRAN Package Check Results for Package TDMR

Last updated on 2015-08-04 08:48:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3 1.82 38.76 40.58 NOTE
r-devel-linux-x86_64-debian-gcc 1.3 1.77 38.17 39.94 NOTE
r-devel-linux-x86_64-fedora-clang 1.3 72.77 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3 68.77 NOTE
r-devel-osx-x86_64-clang 1.3 66.16 OK
r-devel-windows-ix86+x86_64 1.3 18.00 54.00 72.00 NOTE
r-patched-linux-x86_64 1.3 1.93 39.01 40.94 OK
r-patched-solaris-sparc 1.3 455.00 OK
r-patched-solaris-x86 1.3 102.10 OK
r-release-linux-x86_64 1.3 1.87 37.92 39.78 OK
r-release-osx-x86_64-mavericks 1.3 OK
r-release-windows-ix86+x86_64 1.3 16.00 53.00 69.00 OK
r-oldrel-windows-ix86+x86_64 1.3 13.00 70.00 83.00 OK

Check Details

Version: 1.3
Check: R code for possible problems
Result: NOTE
    analyzeImportance: no visible global function definition for ‘par’
    analyzeImportance: no visible global function definition for ‘plot’
    analyzeImportance: no visible global function definition for ‘points’
    applyMetacostRf: no visible global function definition for ‘formula’
    applyMetacostRf: no visible global function definition for ‘predict’
    bfgsTuner: no visible global function definition for ‘runif’
    bfgsTuner: no visible global function definition for ‘optim’
    bigLoopStep: no visible global function definition for ‘write.table’
    bigLoopStep: no visible global function definition for ‘flush.console’
    check.apply.svm: no visible global function definition for ‘predict’
    cma_jInternRCma: no visible global function definition for ‘runif’
    cmaesTuner: no visible global function definition for ‘runif’
    fsRfImportance: no visible global function definition for
     ‘flush.console’
    getSigma: no visible binding for global variable ‘sd’
    predict.TDMclassifier: no visible global function definition for
     ‘predict’
    predict.TDMenvir: no visible global function definition for ‘predict’
    predict.TDMregressor: no visible global function definition for
     ‘predict’
    preprocResData: no visible global function definition for ‘head’
    preprocResData: no visible global function definition for
     ‘flush.console’
    roughfix: no visible global function definition for ‘median.default’
    show.cm.train: no visible global function definition for ‘tail’
    show.cm.vali: no visible global function definition for ‘tail’
    tdmClassify : train.rf: no visible global function definition for
     ‘formula’
    tdmClassify : train.rf: no visible global function definition for
     ‘flush.console’
    tdmClassify : train.mc.rf: no visible global function definition for
     ‘flush.console’
    tdmClassify : train.svm: no visible global function definition for
     ‘flush.console’
    tdmClassify : train.svm: no visible global function definition for
     ‘formula’
    tdmClassify : train.svm: no visible binding for global variable
     ‘na.omit’
    tdmClassify : train.ada: no visible global function definition for
     ‘flush.console’
    tdmClassify : train.ada: no visible global function definition for
     ‘formula’
    tdmClassify : train.naiveBayes: no visible global function definition
     for ‘flush.console’
    tdmClassify : train.naiveBayes: no visible global function definition
     for ‘formula’
    tdmClassify : apply.rf: no visible global function definition for
     ‘predict’
    tdmClassify : apply.other : predict.TDMres_c: no visible global
     function definition for ‘predict’
    tdmClassify : apply.other: no visible global function definition for
     ‘predict’
    tdmClassify : apply.svm: no visible global function definition for
     ‘predict’
    tdmClassify : apply.ada: no visible global function definition for
     ‘predict’
    tdmClassify: no visible global function definition for ‘predict’
    tdmClassify: no visible global function definition for ‘colors’
    tdmClassify: no visible global function definition for ‘pairs’
    tdmClassify: no visible global function definition for ‘barplot’
    tdmClassify: no visible global function definition for ‘write.table’
    tdmClassifyLoop: no visible global function definition for ‘sd’
    tdmClassifySummary: no visible global function definition for ‘sd’
    tdmEmbedDataFrame : <anonymous>: no visible global function definition
     for ‘embed’
    tdmEnvTSensi: no visible global function definition for ‘flush.console’
    tdmGetObj: no visible global function definition for ‘read.table’
    tdmGraphicCloseDev : pdf.dev.off: no visible global function definition
     for ‘dev.list’
    tdmGraphicCloseDev : pdf.dev.off: no visible global function definition
     for ‘dev.off’
    tdmGraphicCloseDev : png.dev.off: no visible global function definition
     for ‘dev.list’
    tdmGraphicCloseDev : png.dev.off: no visible global function definition
     for ‘dev.off’
    tdmGraphicCloseDev: no visible global function definition for
     ‘graphics.off’
    tdmGraphicCloseWin: no visible global function definition for ‘dev.off’
    tdmGraphicInit: no visible global function definition for ‘pdf’
    tdmGraphicNewWin : png.newFile: no visible global function definition
     for ‘png’
    tdmGraphicNewWin: no visible global function definition for ‘dev.new’
    tdmMapCutoff: no visible global function definition for ‘runif’
    tdmMapDesLoad: no visible global function definition for ‘read.table’
    tdmMetacostRf: no visible global function definition for ‘formula’
    tdmMetacostRf: no visible global function definition for
     ‘flush.console’
    tdmMetacostRf: no visible global function definition for ‘predict’
    tdmModSortedRFimport: no visible global function definition for
     ‘formula’
    tdmModSortedRFimport: no visible global function definition for ‘par’
    tdmModSortedRFimport: no visible global function definition for
     ‘barplot’
    tdmOptsDefaultsFill: no visible global function definition for ‘tail’
    tdmParaBootstrap: no visible global function definition for ‘rnorm’
    tdmPlotResMeta : showMeta: no visible global function definition for
     ‘head’
    tdmPlotResMeta : showMeta: no visible global function definition for
     ‘flush.console’
    tdmPrePCA.train: no visible global function definition for ‘prcomp’
    tdmROCR.TDMclassifier : tdmROCR_: no visible global function definition
     for ‘flush.console’
    tdmROCRbase: no visible global function definition for ‘dev.cur’
    tdmReadCmd: no visible global function definition for ‘read.csv’
    tdmReadData : getFilenameRdata: no visible global function definition
     for ‘tail’
    tdmRegress : train.rf: no visible global function definition for
     ‘flush.console’
    tdmRegress : train.svm: no visible global function definition for
     ‘flush.console’
    tdmRegress : train.lm: no visible global function definition for
     ‘flush.console’
    tdmRegress : train.lm: no visible global function definition for ‘lm’
    tdmRegress : apply.rf: no visible global function definition for
     ‘predict’
    tdmRegress : apply.other: no visible global function definition for
     ‘predict’
    tdmRegress: no visible global function definition for ‘plot’
    tdmRegress: no visible global function definition for ‘points’
    tdmRegress: no visible global function definition for ‘title’
    tdmRegress: no visible global function definition for ‘legend’
    tdmRegressLoop: no visible global function definition for ‘sd’
    tdmRegressSummary: no visible global function definition for ‘sd’
    tdmStartOther: no visible global function definition for ‘write.table’
    tdmStartSpot: no visible global function definition for ‘read.table’
    tdmStartSpot: no visible global function definition for ‘write.table’
    testMeta: no visible global function definition for ‘head’
    unbiasedBestRun_O: no visible global function definition for ‘tail’
    unbiasedBestRun_O: no visible global function definition for ‘sd’
    unbiasedBestRun_O: no visible global function definition for
     ‘write.table’
    unbiasedRun: no visible global function definition for ‘sd’
    Undefined global functions or variables:
     barplot colors dev.cur dev.list dev.new dev.off embed flush.console
     formula graphics.off head legend lm median.default na.omit optim
     pairs par pdf plot png points prcomp predict read.csv read.table
     rnorm runif sd tail title write.table
    Consider adding
     importFrom("grDevices", "colors", "dev.cur", "dev.list", "dev.new",
     "dev.off", "graphics.off", "pdf", "png")
     importFrom("graphics", "barplot", "legend", "pairs", "par", "plot",
     "points", "title")
     importFrom("stats", "embed", "formula", "lm", "median.default",
     "na.omit", "optim", "prcomp", "predict", "rnorm", "runif",
     "sd")
     importFrom("utils", "flush.console", "head", "read.csv", "read.table",
     "tail", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3
Check: R code for possible problems
Result: NOTE
    analyzeImportance: no visible global function definition for 'par'
    analyzeImportance: no visible global function definition for 'plot'
    analyzeImportance: no visible global function definition for 'points'
    applyMetacostRf: no visible global function definition for 'formula'
    applyMetacostRf: no visible global function definition for 'predict'
    bfgsTuner: no visible global function definition for 'runif'
    bfgsTuner: no visible global function definition for 'optim'
    bigLoopStep: no visible global function definition for 'write.table'
    bigLoopStep: no visible global function definition for 'flush.console'
    check.apply.svm: no visible global function definition for 'predict'
    cma_jInternRCma: no visible global function definition for 'runif'
    cmaesTuner: no visible global function definition for 'runif'
    fsRfImportance: no visible global function definition for
     'flush.console'
    getSigma: no visible binding for global variable 'sd'
    predict.TDMclassifier: no visible global function definition for
     'predict'
    predict.TDMenvir: no visible global function definition for 'predict'
    predict.TDMregressor: no visible global function definition for
     'predict'
    preprocResData: no visible global function definition for 'head'
    preprocResData: no visible global function definition for
     'flush.console'
    roughfix: no visible global function definition for 'median.default'
    show.cm.train: no visible global function definition for 'tail'
    show.cm.vali: no visible global function definition for 'tail'
    tdmClassify : train.rf: no visible global function definition for
     'formula'
    tdmClassify : train.rf: no visible global function definition for
     'flush.console'
    tdmClassify : train.mc.rf: no visible global function definition for
     'flush.console'
    tdmClassify : train.svm: no visible global function definition for
     'flush.console'
    tdmClassify : train.svm: no visible global function definition for
     'formula'
    tdmClassify : train.svm: no visible binding for global variable
     'na.omit'
    tdmClassify : train.ada: no visible global function definition for
     'flush.console'
    tdmClassify : train.ada: no visible global function definition for
     'formula'
    tdmClassify : train.naiveBayes: no visible global function definition
     for 'flush.console'
    tdmClassify : train.naiveBayes: no visible global function definition
     for 'formula'
    tdmClassify : apply.rf: no visible global function definition for
     'predict'
    tdmClassify : apply.other : predict.TDMres_c: no visible global
     function definition for 'predict'
    tdmClassify : apply.other: no visible global function definition for
     'predict'
    tdmClassify : apply.svm: no visible global function definition for
     'predict'
    tdmClassify : apply.ada: no visible global function definition for
     'predict'
    tdmClassify: no visible global function definition for 'predict'
    tdmClassify: no visible global function definition for 'colors'
    tdmClassify: no visible global function definition for 'pairs'
    tdmClassify: no visible global function definition for 'barplot'
    tdmClassify: no visible global function definition for 'write.table'
    tdmClassifyLoop: no visible global function definition for 'sd'
    tdmClassifySummary: no visible global function definition for 'sd'
    tdmEmbedDataFrame : <anonymous>: no visible global function definition
     for 'embed'
    tdmEnvTSensi: no visible global function definition for 'flush.console'
    tdmGetObj: no visible global function definition for 'read.table'
    tdmGraphicCloseDev : pdf.dev.off: no visible global function definition
     for 'dev.list'
    tdmGraphicCloseDev : pdf.dev.off: no visible global function definition
     for 'dev.off'
    tdmGraphicCloseDev : png.dev.off: no visible global function definition
     for 'dev.list'
    tdmGraphicCloseDev : png.dev.off: no visible global function definition
     for 'dev.off'
    tdmGraphicCloseDev: no visible global function definition for
     'graphics.off'
    tdmGraphicCloseWin: no visible global function definition for 'dev.off'
    tdmGraphicInit: no visible global function definition for 'pdf'
    tdmGraphicNewWin : png.newFile: no visible global function definition
     for 'png'
    tdmGraphicNewWin: no visible global function definition for 'dev.new'
    tdmGraphicToTop: no visible global function definition for 'bringToTop'
    tdmMapCutoff: no visible global function definition for 'runif'
    tdmMapDesLoad: no visible global function definition for 'read.table'
    tdmMetacostRf: no visible global function definition for 'formula'
    tdmMetacostRf: no visible global function definition for
     'flush.console'
    tdmMetacostRf: no visible global function definition for 'predict'
    tdmModSortedRFimport: no visible global function definition for
     'formula'
    tdmModSortedRFimport: no visible global function definition for 'par'
    tdmModSortedRFimport: no visible global function definition for
     'barplot'
    tdmOptsDefaultsFill: no visible global function definition for 'tail'
    tdmParaBootstrap: no visible global function definition for 'rnorm'
    tdmPlotResMeta : showMeta: no visible global function definition for
     'head'
    tdmPlotResMeta : showMeta: no visible global function definition for
     'flush.console'
    tdmPrePCA.train: no visible global function definition for 'prcomp'
    tdmROCR.TDMclassifier : tdmROCR_: no visible global function definition
     for 'flush.console'
    tdmROCRbase: no visible global function definition for 'dev.cur'
    tdmROCRbase: no visible global function definition for 'bringToTop'
    tdmReadCmd: no visible global function definition for 'read.csv'
    tdmReadData : getFilenameRdata: no visible global function definition
     for 'tail'
    tdmRegress : train.rf: no visible global function definition for
     'flush.console'
    tdmRegress : train.svm: no visible global function definition for
     'flush.console'
    tdmRegress : train.lm: no visible global function definition for
     'flush.console'
    tdmRegress : train.lm: no visible global function definition for 'lm'
    tdmRegress : apply.rf: no visible global function definition for
     'predict'
    tdmRegress : apply.other: no visible global function definition for
     'predict'
    tdmRegress: no visible global function definition for 'plot'
    tdmRegress: no visible global function definition for 'points'
    tdmRegress: no visible global function definition for 'title'
    tdmRegress: no visible global function definition for 'legend'
    tdmRegressLoop: no visible global function definition for 'sd'
    tdmRegressSummary: no visible global function definition for 'sd'
    tdmStartOther: no visible global function definition for 'write.table'
    tdmStartSpot: no visible global function definition for 'read.table'
    tdmStartSpot: no visible global function definition for 'write.table'
    testMeta: no visible global function definition for 'head'
    unbiasedBestRun_O: no visible global function definition for 'tail'
    unbiasedBestRun_O: no visible global function definition for 'sd'
    unbiasedBestRun_O: no visible global function definition for
     'write.table'
    unbiasedRun: no visible global function definition for 'sd'
    Undefined global functions or variables:
     barplot bringToTop colors dev.cur dev.list dev.new dev.off embed
     flush.console formula graphics.off head legend lm median.default
     na.omit optim pairs par pdf plot png points prcomp predict read.csv
     read.table rnorm runif sd tail title write.table
    Consider adding
     importFrom("grDevices", "bringToTop", "colors", "dev.cur", "dev.list",
     "dev.new", "dev.off", "graphics.off", "pdf", "png")
     importFrom("graphics", "barplot", "legend", "pairs", "par", "plot",
     "points", "title")
     importFrom("stats", "embed", "formula", "lm", "median.default",
     "na.omit", "optim", "prcomp", "predict", "rnorm", "runif",
     "sd")
     importFrom("utils", "flush.console", "head", "read.csv", "read.table",
     "tail", "write.table")
    to your NAMESPACE.
Flavor: r-devel-windows-ix86+x86_64