CRAN Package Check Results for Package TPmsm

Last updated on 2017-02-22 22:51:06.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 8.17 19.23 27.40 ERROR
r-devel-linux-x86_64-debian-gcc 1.2.1 7.37 22.22 29.60 OK
r-devel-linux-x86_64-fedora-clang 1.2.1 42.68 ERROR --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.2.1 58.24 OK --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.2.1 42.79 OK --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.2.1 58.00 110.00 168.00 OK
r-patched-linux-x86_64 1.2.1 6.91 19.63 26.53 OK
r-patched-solaris-sparc 1.2.1 249.10 ERROR
r-patched-solaris-x86 1.2.1 80.30 OK
r-release-linux-x86_64 1.2.1 6.74 19.15 25.90 OK
r-release-osx-x86_64-mavericks 1.2.1 OK
r-release-windows-ix86+x86_64 1.2.1 110.00 55.00 165.00 OK
r-oldrel-windows-ix86+x86_64 1.2.1 75.00 65.00 140.00 OK

Check Details

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘TPmsm-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: as.data.frame.survTP
    > ### Title: as.data.frame method for a survTP object
    > ### Aliases: as.data.frame.survTP
    > ### Keywords: manip methods survival
    >
    > ### ** Examples
    >
    > # Example for the "TPmsm" format
    > weiTP <- dgpTP(n=100, corr=1, dist="weibull", dist.par=c(2, 7, 2, 7),
    + model.cens="exponential", cens.par = 6, state2.prob=0.6)
    *** invalid %N$ use detected ***
    Aborted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.1
Flags: --no-stop-on-test-error
Check: examples
Result: ERROR
    Running examples in ‘TPmsm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: contour.TPCmsm
    > ### Title: contour method for a TPCmsm object
    > ### Aliases: contour.TPCmsm
    > ### Keywords: aplot hplot methods multivariate survival
    >
    > ### ** Examples
    >
    > # Set the number of threads
    > nth <- setThreadsTP(2)
    >
    > # Create survTP object
    > data(colonTP)
    > colonTP_obj <- with( colonTP, survTP(time1, event1, Stime, event, age=age) )
    >
    > # Compute IPCW conditional transition probabilities without confidence band
    > TPCmsm_obj <- transIPCW(colonTP_obj, s=57, t=310, x=0)
    
     *** caught segfault ***
    address 0x8d4e160, cause 'memory not mapped'
    
     *** caught segfault ***
    address 0x8d4e160, cause 'memory not mapped'
    
    Traceback:
     1: .Call(Rf_TransPROBIPCW2, object, UT, UX, h, window, methodweights, as.integer(nboot), as.integer(methodest), PACKAGE = "TPmsm")
     2: TransPROB.IPCW2(object, UT, UX, nboot = 1, ...)
     3: TransPROB(object, UT, UX, nboot = , ...)
     4: TransMethod.TPC(object, s, t, state.names, conf, n.boot, conf.level, method.boot, xi = x, bw = bw, window = window, methodweights = method.weights, methodest = method.est, ...)
     5: TransMethod(object, s, t, state.names, conf, n.boot, conf.level, method.boot, xi = x, bw = bw, window = window, methodweights = method.weights, methodest = method.est, ...)
     6: transIPCW(colonTP_obj, s = 57, t = 310, x = 0)
    An irrecoverable exception occurred. R is aborting now ...
    
    Traceback:
     1: .Call(Rf_TransPROBIPCW2, object, UT, UX, h, window, methodweights, as.integer(nboot), as.integer(methodest), PACKAGE = "TPmsm")
     2: TransPROB.IPCW2(object, UT, UX, nboot = 1, ...)
     3: TransPROB(object, UT, UX, nboot = 1, ...)
     4: TransMethod.TPC(object, s, t, state.names, conf, n.boot, conf.level, method.boot, xi = x, bw = bw, window = window, methodweights = method.weights, methodest = method.est, ...)
     5: TransMethod(object, s, t, state.names, conf, n.boot, conf.level, method.boot, xi = x, bw = bw, window = window, methodweights = method.weights, methodest = method.est, ...)
     6: transIPCW(colonTP_obj, s = 57, t = 310, x = 0)
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘TPmsm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: image.TPCmsm
    > ### Title: image method for a TPCmsm object
    > ### Aliases: image.TPCmsm
    > ### Keywords: hplot methods multivariate survival
    >
    > ### ** Examples
    >
    > # Set the number of threads
    > nth <- setThreadsTP(2)
    >
    > # Create survTP object
    > data(heartTP)
    > heartTP_obj <- with( heartTP, survTP(time1, event1, Stime, event, age=age) )
    >
    > # Compute LIN conditional transition probabilities with confidence band
    > TPCmsm_obj <- transLIN(heartTP_obj, s=57, t=310, x=0, conf=TRUE, n.boot=100,
    + method.boot="basic")
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: .Call(Rf_BtoTPCmsm, lst, UT, UX, s, t, x, statenames, as.integer(nboot), conflevel, methodboot, PACKAGE = "TPmsm")
     2: BtoTPCmsm(lst, UT, UX, s, t, xi, state.names, n.boot, conf.level, method.boot)
     3: TransBoot.TPC(object, s, t, state.names, n.boot, conf.level, method.boot, xi, ...)
     4: TransBoot(object, s, t, state.names, n.boot, conf.level, method.boot, xi, ...)
     5: TransMethod.TPC(object, s, t, state.names, conf, n.boot, conf.level, method.boot, xi = x, bw = bw, window = window, methodweights = method.weights, ...)
     6: TransMethod(object, s, t, state.names, conf, n.boot, conf.level, method.boot, xi = x, bw = bw, window = window, methodweights = method.weights, ...)
     7: transLIN(heartTP_obj, s = 57, t = 310, x = 0, conf = TRUE, n.boot = 100, method.boot = "basic")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-sparc