CRAN Package Check Results for Package TraMineRextras

Last updated on 2017-02-21 03:49:56.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.5 4.05 55.92 59.96 ERROR
r-devel-linux-x86_64-debian-gcc 0.2.5 3.92 58.62 62.54 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.5 127.71 ERROR --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.2.5 124.65 ERROR --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.2.5 82.42 ERROR --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.2.5 28.00 184.00 212.00 ERROR
r-patched-linux-x86_64 0.2.5 4.21 55.91 60.12 OK
r-patched-solaris-sparc 0.2.5 739.90 OK
r-patched-solaris-x86 0.2.5 157.90 OK
r-release-linux-x86_64 0.2.5 3.88 56.97 60.85 OK
r-release-osx-x86_64-mavericks 0.2.5 OK
r-release-windows-ix86+x86_64 0.2.5 21.00 188.00 209.00 OK
r-oldrel-windows-ix86+x86_64 0.2.5 16.00 119.00 135.00 OK

Check Details

Version: 0.2.5
Check: compiled code
Result: NOTE
    File ‘TraMineRextras/libs/TraMineRextras.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.5
Check: examples
Result: ERROR
    Running examples in ‘TraMineRextras-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: ctplot
    > ### Title: Plot individual trajectories of longitudinal categorical data.
    > ### Aliases: ctplot
    > ### Keywords: plot
    >
    > ### ** Examples
    >
    >
    > ## ==================
    > ## the plot principle
    > ## ==================
    >
    > x <- c(1,2,2,2,3,4,1,2,2,2,3,4,1,1.5,2,2,3,3.5,4,4,1,2,2,2,3,4,
    + 1,2,3,4,3.5,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,1,2,
    + 1,2,3,4,1,2)
    >
    > y <- factor(c("A","B","B","B","C","A","A","B","B","B","C","A","A",
    + "B","B","C","C","C","C","C","A","B","B","B","C","A",
    + "A","A","A","A","A","B","A","A","A","A","A","A","A",
    + "A","A","A","A","A","A","A","A","A","A","A","A","A",
    + "A","A","A","A","A","B","C","A","A","A"))
    >
    > id <- factor(c(1,1,1,1,1,1,2,2,2,2,2,2,3,3,3,3,3,3,3,3,4,4,4,4,4,4,
    + 5,5,5,5,6,6,7,7,7,7,8,8,8,8,9,9,9,9,10,10,10,10,
    + 11,11,11,11,12,12,13,13,14,14,14,14,15,15))
    >
    > ctplot(x,y,id,lwd.min=5,lwd.max=12,cex=1,
    + type="non-embeddable",alpha=0.9,
    + sf.cex=0.5,sf.cex.leaves=1,grid.scale=0.4)
    Warning in xr * sin(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in yr * cos(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in xr * sin(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in yr * cos(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    >
    >
    > ## ====================
    > ## plot the biofam data
    > ## ====================
    >
    > ## loading the data and defining an event sequence dataset
    > ## =======================================================
    >
    > data(biofam)
    > lab <- c("Parent","Left","Married",
    + "Left+Marr","Child","Left+Child",
    + "Left+Marr+Child","Divorced")
    > biofam.seq <- seqdef(data=biofam,var=10:25,labels=lab)
     [>] 8 distinct states appear in the data:
     1 = 0
     2 = 1
     3 = 2
     4 = 3
     5 = 4
     6 = 5
     7 = 6
     8 = 7
     [>] state coding:
     [alphabet] [label] [long label]
     1 0 0 Parent
     2 1 1 Left
     3 2 2 Married
     4 3 3 Left+Marr
     5 4 4 Child
     6 5 5 Left+Child
     7 6 6 Left+Marr+Child
     8 7 7 Divorced
     [>] 2000 sequences in the data set
     [>] min/max sequence length: 16/16
    > biofam.TSE <- seqformat(data=biofam.seq,from="STS",to="TSE",
    + tevent=seqetm(seq=biofam.seq,method="state"))
     [>] input is a sequence object, converting from STS format
     [>] converting special codes for missing states to NA's
     [>] converting 2000 sequences to TSE format ...
     [>] STS sequences converted to 5130 TSE seq./rows
    > biofam.TSE$event <- factor(biofam.TSE$event,levels=lab)
    >
    > ## plot the data
    > ## =============
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,
    + y=biofam.TSE$event,
    + id=biofam.TSE$id,x.order=TRUE,
    + type="non-embeddable",lwd.max=10)
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,y=biofam.TSE$event,
    + id=biofam.TSE$id,split="first",layout=c(2,1),
    + grid.scale=0.5,x.order=TRUE)
    Warning in if (((ncov * splity) > 1) & (length(main) == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if ((ncov * splity == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if (((ncov * splity) > 1) & (length(main) == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if ((ncov * splity == 1)) { :
     the condition has length > 1 and only the first element will be used
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,y=biofam.TSE$event,
    + id=biofam.TSE$id,
    + x.order=TRUE,x.orderalign="last",split="last",
    + layout=c(4,2),lwd.max=2.5,grid.scale=0.5)
    Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, :
     row names contain missing values
    Calls: ctplot ... as.data.frame -> as.data.frame.list -> do.call -> <Anonymous>
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.5
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘TraMineRextras/libs/TraMineRextras.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.2.5
Flags: --no-stop-on-test-error
Check: examples
Result: ERROR
    Running examples in ‘TraMineRextras-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: ctplot
    > ### Title: Plot individual trajectories of longitudinal categorical data.
    > ### Aliases: ctplot
    > ### Keywords: plot
    >
    > ### ** Examples
    >
    >
    > ## ==================
    > ## the plot principle
    > ## ==================
    >
    > x <- c(1,2,2,2,3,4,1,2,2,2,3,4,1,1.5,2,2,3,3.5,4,4,1,2,2,2,3,4,
    + 1,2,3,4,3.5,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,1,2,
    + 1,2,3,4,1,2)
    >
    > y <- factor(c("A","B","B","B","C","A","A","B","B","B","C","A","A",
    + "B","B","C","C","C","C","C","A","B","B","B","C","A",
    + "A","A","A","A","A","B","A","A","A","A","A","A","A",
    + "A","A","A","A","A","A","A","A","A","A","A","A","A",
    + "A","A","A","A","A","B","C","A","A","A"))
    >
    > id <- factor(c(1,1,1,1,1,1,2,2,2,2,2,2,3,3,3,3,3,3,3,3,4,4,4,4,4,4,
    + 5,5,5,5,6,6,7,7,7,7,8,8,8,8,9,9,9,9,10,10,10,10,
    + 11,11,11,11,12,12,13,13,14,14,14,14,15,15))
    >
    > ctplot(x,y,id,lwd.min=5,lwd.max=12,cex=1,
    + type="non-embeddable",alpha=0.9,
    + sf.cex=0.5,sf.cex.leaves=1,grid.scale=0.4)
    Warning in xr * sin(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in yr * cos(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in xr * sin(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in yr * cos(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    >
    >
    > ## ====================
    > ## plot the biofam data
    > ## ====================
    >
    > ## loading the data and defining an event sequence dataset
    > ## =======================================================
    >
    > data(biofam)
    > lab <- c("Parent","Left","Married",
    + "Left+Marr","Child","Left+Child",
    + "Left+Marr+Child","Divorced")
    > biofam.seq <- seqdef(data=biofam,var=10:25,labels=lab)
     [>] 8 distinct states appear in the data:
     1 = 0
     2 = 1
     3 = 2
     4 = 3
     5 = 4
     6 = 5
     7 = 6
     8 = 7
     [>] state coding:
     [alphabet] [label] [long label]
     1 0 0 Parent
     2 1 1 Left
     3 2 2 Married
     4 3 3 Left+Marr
     5 4 4 Child
     6 5 5 Left+Child
     7 6 6 Left+Marr+Child
     8 7 7 Divorced
     [>] 2000 sequences in the data set
     [>] min/max sequence length: 16/16
    > biofam.TSE <- seqformat(data=biofam.seq,from="STS",to="TSE",
    + tevent=seqetm(seq=biofam.seq,method="state"))
     [>] input is a sequence object, converting from STS format
     [>] converting special codes for missing states to NA's
     [>] converting 2000 sequences to TSE format ...
     [>] STS sequences converted to 5130 TSE seq./rows
    > biofam.TSE$event <- factor(biofam.TSE$event,levels=lab)
    >
    > ## plot the data
    > ## =============
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,
    + y=biofam.TSE$event,
    + id=biofam.TSE$id,x.order=TRUE,
    + type="non-embeddable",lwd.max=10)
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,y=biofam.TSE$event,
    + id=biofam.TSE$id,split="first",layout=c(2,1),
    + grid.scale=0.5,x.order=TRUE)
    Warning in if (((ncov * splity) > 1) & (length(main) == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if ((ncov * splity == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if (((ncov * splity) > 1) & (length(main) == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if ((ncov * splity == 1)) { :
     the condition has length > 1 and only the first element will be used
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,y=biofam.TSE$event,
    + id=biofam.TSE$id,
    + x.order=TRUE,x.orderalign="last",split="last",
    + layout=c(4,2),lwd.max=2.5,grid.scale=0.5)
    Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, :
     row names contain missing values
    Calls: ctplot ... as.data.frame -> as.data.frame.list -> do.call -> <Anonymous>
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.2.5
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'TraMineRextras-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: ctplot
    > ### Title: Plot individual trajectories of longitudinal categorical data.
    > ### Aliases: ctplot
    > ### Keywords: plot
    >
    > ### ** Examples
    >
    >
    > ## ==================
    > ## the plot principle
    > ## ==================
    >
    > x <- c(1,2,2,2,3,4,1,2,2,2,3,4,1,1.5,2,2,3,3.5,4,4,1,2,2,2,3,4,
    + 1,2,3,4,3.5,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,1,2,
    + 1,2,3,4,1,2)
    >
    > y <- factor(c("A","B","B","B","C","A","A","B","B","B","C","A","A",
    + "B","B","C","C","C","C","C","A","B","B","B","C","A",
    + "A","A","A","A","A","B","A","A","A","A","A","A","A",
    + "A","A","A","A","A","A","A","A","A","A","A","A","A",
    + "A","A","A","A","A","B","C","A","A","A"))
    >
    > id <- factor(c(1,1,1,1,1,1,2,2,2,2,2,2,3,3,3,3,3,3,3,3,4,4,4,4,4,4,
    + 5,5,5,5,6,6,7,7,7,7,8,8,8,8,9,9,9,9,10,10,10,10,
    + 11,11,11,11,12,12,13,13,14,14,14,14,15,15))
    >
    > ctplot(x,y,id,lwd.min=5,lwd.max=12,cex=1,
    + type="non-embeddable",alpha=0.9,
    + sf.cex=0.5,sf.cex.leaves=1,grid.scale=0.4)
    Warning in xr * sin(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in yr * cos(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in xr * sin(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in yr * cos(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    >
    >
    > ## ====================
    > ## plot the biofam data
    > ## ====================
    >
    > ## loading the data and defining an event sequence dataset
    > ## =======================================================
    >
    > data(biofam)
    > lab <- c("Parent","Left","Married",
    + "Left+Marr","Child","Left+Child",
    + "Left+Marr+Child","Divorced")
    > biofam.seq <- seqdef(data=biofam,var=10:25,labels=lab)
     [>] 8 distinct states appear in the data:
     1 = 0
     2 = 1
     3 = 2
     4 = 3
     5 = 4
     6 = 5
     7 = 6
     8 = 7
     [>] state coding:
     [alphabet] [label] [long label]
     1 0 0 Parent
     2 1 1 Left
     3 2 2 Married
     4 3 3 Left+Marr
     5 4 4 Child
     6 5 5 Left+Child
     7 6 6 Left+Marr+Child
     8 7 7 Divorced
     [>] 2000 sequences in the data set
     [>] min/max sequence length: 16/16
    > biofam.TSE <- seqformat(data=biofam.seq,from="STS",to="TSE",
    + tevent=seqetm(seq=biofam.seq,method="state"))
     [>] input is a sequence object, converting from STS format
     [>] converting special codes for missing states to NA's
     [>] converting 2000 sequences to TSE format ...
     [>] STS sequences converted to 5130 TSE seq./rows
    > biofam.TSE$event <- factor(biofam.TSE$event,levels=lab)
    >
    > ## plot the data
    > ## =============
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,
    + y=biofam.TSE$event,
    + id=biofam.TSE$id,x.order=TRUE,
    + type="non-embeddable",lwd.max=10)
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,y=biofam.TSE$event,
    + id=biofam.TSE$id,split="first",layout=c(2,1),
    + grid.scale=0.5,x.order=TRUE)
    Warning in if (((ncov * splity) > 1) & (length(main) == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if ((ncov * splity == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if (((ncov * splity) > 1) & (length(main) == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if ((ncov * splity == 1)) { :
     the condition has length > 1 and only the first element will be used
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,y=biofam.TSE$event,
    + id=biofam.TSE$id,
    + x.order=TRUE,x.orderalign="last",split="last",
    + layout=c(4,2),lwd.max=2.5,grid.scale=0.5)
    Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, :
     row names contain missing values
    Calls: ctplot ... as.data.frame -> as.data.frame.list -> do.call -> <Anonymous>
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.5
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'TraMineRextras-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: ctplot
    > ### Title: Plot individual trajectories of longitudinal categorical data.
    > ### Aliases: ctplot
    > ### Keywords: plot
    >
    > ### ** Examples
    >
    >
    > ## ==================
    > ## the plot principle
    > ## ==================
    >
    > x <- c(1,2,2,2,3,4,1,2,2,2,3,4,1,1.5,2,2,3,3.5,4,4,1,2,2,2,3,4,
    + 1,2,3,4,3.5,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,1,2,
    + 1,2,3,4,1,2)
    >
    > y <- factor(c("A","B","B","B","C","A","A","B","B","B","C","A","A",
    + "B","B","C","C","C","C","C","A","B","B","B","C","A",
    + "A","A","A","A","A","B","A","A","A","A","A","A","A",
    + "A","A","A","A","A","A","A","A","A","A","A","A","A",
    + "A","A","A","A","A","B","C","A","A","A"))
    >
    > id <- factor(c(1,1,1,1,1,1,2,2,2,2,2,2,3,3,3,3,3,3,3,3,4,4,4,4,4,4,
    + 5,5,5,5,6,6,7,7,7,7,8,8,8,8,9,9,9,9,10,10,10,10,
    + 11,11,11,11,12,12,13,13,14,14,14,14,15,15))
    >
    > ctplot(x,y,id,lwd.min=5,lwd.max=12,cex=1,
    + type="non-embeddable",alpha=0.9,
    + sf.cex=0.5,sf.cex.leaves=1,grid.scale=0.4)
    Warning in xr * sin(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in yr * cos(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in xr * sin(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    Warning in yr * cos(deg) :
     Recycling array of length 1 in array-vector arithmetic is deprecated.
     Use c() or as.vector() instead.
    
    >
    >
    > ## ====================
    > ## plot the biofam data
    > ## ====================
    >
    > ## loading the data and defining an event sequence dataset
    > ## =======================================================
    >
    > data(biofam)
    > lab <- c("Parent","Left","Married",
    + "Left+Marr","Child","Left+Child",
    + "Left+Marr+Child","Divorced")
    > biofam.seq <- seqdef(data=biofam,var=10:25,labels=lab)
     [>] 8 distinct states appear in the data:
     1 = 0
     2 = 1
     3 = 2
     4 = 3
     5 = 4
     6 = 5
     7 = 6
     8 = 7
     [>] state coding:
     [alphabet] [label] [long label]
     1 0 0 Parent
     2 1 1 Left
     3 2 2 Married
     4 3 3 Left+Marr
     5 4 4 Child
     6 5 5 Left+Child
     7 6 6 Left+Marr+Child
     8 7 7 Divorced
     [>] 2000 sequences in the data set
     [>] min/max sequence length: 16/16
    > biofam.TSE <- seqformat(data=biofam.seq,from="STS",to="TSE",
    + tevent=seqetm(seq=biofam.seq,method="state"))
     [>] input is a sequence object, converting from STS format
     [>] converting special codes for missing states to NA's
     [>] converting 2000 sequences to TSE format ...
     [>] STS sequences converted to 5130 TSE seq./rows
    > biofam.TSE$event <- factor(biofam.TSE$event,levels=lab)
    >
    > ## plot the data
    > ## =============
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,
    + y=biofam.TSE$event,
    + id=biofam.TSE$id,x.order=TRUE,
    + type="non-embeddable",lwd.max=10)
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,y=biofam.TSE$event,
    + id=biofam.TSE$id,split="first",layout=c(2,1),
    + grid.scale=0.5,x.order=TRUE)
    Warning in if (((ncov * splity) > 1) & (length(main) == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if ((ncov * splity == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if (((ncov * splity) > 1) & (length(main) == 1)) { :
     the condition has length > 1 and only the first element will be used
    Warning in if ((ncov * splity == 1)) { :
     the condition has length > 1 and only the first element will be used
    >
    > par(mar=c(4,8,2,2))
    > ctplot(x=biofam.TSE$time,y=biofam.TSE$event,
    + id=biofam.TSE$id,
    + x.order=TRUE,x.orderalign="last",split="last",
    + layout=c(4,2),lwd.max=2.5,grid.scale=0.5)
    Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, :
     row names contain missing values
    Calls: ctplot ... as.data.frame -> as.data.frame.list -> do.call -> <Anonymous>
    Execution halted
Flavor: r-devel-windows-ix86+x86_64