CRAN Package Check Results for Package WGCNA

Last updated on 2014-04-20 09:48:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.34 7.00 104.56 111.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.34 7.46 106.82 114.28 NOTE
r-devel-linux-x86_64-fedora-clang 1.34 216.85 NOTE
r-devel-linux-x86_64-fedora-gcc 1.34 206.51 NOTE
r-devel-macosx-x86_64-clang 1.34 159.05 NOTE
r-devel-macosx-x86_64-gcc 1.34 ERROR
r-devel-windows-ix86+x86_64 1.34 24.00 171.00 195.00 NOTE
r-patched-linux-x86_64 1.34 7.65 103.02 110.68 NOTE
r-patched-solaris-sparc 1.34 1173.00 NOTE
r-patched-solaris-x86 1.34 246.80 NOTE
r-release-linux-ix86 NOTE
r-release-linux-x86_64 1.34 7.37 106.94 114.31 NOTE
r-release-macosx-x86_64 1.34 ERROR
r-release-windows-ix86+x86_64 1.34 34.00 176.00 210.00 NOTE
r-oldrel-windows-ix86+x86_64 1.34 27.00 177.00 204.00 OK

Check Details

Version: 1.34
Check: foreign function calls
Result: NOTE
    Calls with DUP = FALSE:
     .C("tomSimilarityFromAdj", as.double(as.matrix(adjMat)), as.integer(nGenes),
     as.integer(TOMTypeC), as.integer(TOMDenomC), tom = as.double(tom),
     as.integer(verbose), as.integer(indent), DUP = FALSE, PACKAGE = "WGCNA")
     .C("bicor1Fast", x = as.double(x), nrow = as.integer(nrow(x)),
     ncol = as.integer(ncol(x)), maxPOutliers = as.double(maxPOutliers),
     quick = as.double(quick), fallback = as.integer(fallback),
     cosine = as.integer(cosineX), res = as.double(bi), nNA = as.integer(nNA),
     err = as.integer(err), warn = as.integer(warnX), nThreads = as.integer(nThreads),
     verbose = as.integer(verbose), indent = as.integer(indent),
     DUP = FALSE, NAOK = TRUE, PACKAGE = "WGCNA")
     .C("bicorFast", x = as.double(x), nrow = as.integer(nrow(x)),
     ncolx = as.integer(ncol(x)), y = as.double(y), ncoly = as.integer(ncol(y)),
     robustX = as.integer(robustX), robustY = as.integer(robustY),
     maxPOutliers = as.double(maxPOutliers), quick = as.double(quick),
     fallback = as.integer(fallback), cosineX = as.integer(cosineX),
     cosineY = as.integer(cosineY), res = as.double(bi), nNA = as.integer(nNA),
     err = as.integer(err), warnX = as.integer(warnX), warnY = as.integer(warnY),
     nThreads = as.integer(nThreads), verbose = as.integer(verbose),
     indent = as.integer(indent), DUP = FALSE, NAOK = TRUE, PACKAGE = "WGCNA")
     .C("minWhichMin", as.double(setChunks), as.integer(nrow(setChunks)),
     as.integer(ncol(setChunks)), as.double(min), as.double(which),
     DUP = FALSE, PACKAGE = "WGCNA")
     .C("minWhichMin", as.double(setTomDS), as.integer(nrow(setTomDS)),
     as.integer(ncol(setTomDS)), as.double(min), as.double(which),
     DUP = FALSE, PACKAGE = "WGCNA")
     .C("tomSimilarity", tempExpr, as.integer(nGSamples[set]), as.integer(nBlockGenes),
     as.integer(CcorType), as.integer(CnetworkType), as.double(power),
     as.integer(CTOMType), as.integer(TOMDenomC), as.double(maxPOutliers),
     as.double(quickCor), as.integer(fallback), as.integer(cosineCorrelation),
     tom = as.double(tom), as.integer(warn), as.integer(nThreads),
     as.integer(callVerb), as.integer(callInd), NAOK = TRUE, DUP = FALSE,
     PACKAGE = "WGCNA")
     .C("quantileC", data = as.double(data), nrow = as.integer(nrow),
     ncol = as.integer(ncol), p = as.double(p), quantiles = as.double(quantiles),
     DUP = FALSE, NAOK = TRUE)
     .C("mean", as.double(dstX), as.integer(nSets), as.integer(nGenes *
     nChanged), as.double(dst), DUP = FALSE, PACKAGE = "WGCNA")
     .C("minWhichMin", as.double(dstX), as.integer(nSets), as.integer(nGenes *
     nChanged), as.double(dst), as.double(which), DUP = FALSE,
     PACKAGE = "WGCNA")
     .C("minWhichMin", as.double(dst), as.integer(nCenters), as.integer(nGenes),
     as.double(nearestDist), as.double(nearest), DUP = FALSE,
     PACKAGE = "WGCNA")
     .C("corFast", x = as.double(x), nrow = as.integer(nrow(x)), ncolx = as.integer(ncol(x)),
     y = as.double(y), ncoly = as.integer(ncol(y)), quick = as.double(quick),
     cosineX = as.integer(cosineX), cosineY = as.integer(cosineY),
     res = as.double(bi), nNA = as.integer(nNA), err = as.integer(err),
     nThreads = as.integer(nThreads), verbose = as.integer(verbose),
     indent = as.integer(indent), DUP = FALSE, NAOK = TRUE, PACKAGE = "WGCNA")
     .C("minWhichMin", as.double(blockAdj), as.integer(nSets), as.integer(nLinks *
     nBlockGenes), min = as.double(min), as.double(which), DUP = FALSE)
     .C("minWhichMin", as.double(-blockAdj), as.integer(nSets), as.integer(nLinks *
     nBlockGenes), min = as.double(min), as.double(which), DUP = FALSE)
     .C("minWhichMin", as.double(dst), as.integer(nCenters), as.integer(nGenes),
     as.double(nearestDist), as.double(nearest), DUP = FALSE,
     PACKAGE = "WGCNA")
    DUP = FALSE is deprecated and may be disabled in future versions of R.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.34
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘Hmisc’ ‘impute’
    
    Packages suggested but not available for checking:
     ‘GO.db’ ‘org.Hs.eg.db’ ‘org.Mm.eg.db’ ‘AnnotationDbi’ ‘minet’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-macosx-x86_64-gcc

Version: 1.34
Check: package dependencies
Result: ERROR
    Package required but not available: ‘impute’
    
    Packages suggested but not available for checking:
     ‘GO.db’ ‘org.Hs.eg.db’ ‘org.Mm.eg.db’ ‘AnnotationDbi’ ‘minet’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-macosx-x86_64