CRAN Package Check Results for Package WhopGenome

Last updated on 2016-12-05 19:47:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.4 10.93 17.54 28.46 ERROR
r-devel-linux-x86_64-debian-gcc 0.9.4 11.91 17.66 29.57 ERROR
r-devel-linux-x86_64-fedora-clang 0.9.4 61.66 ERROR --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.9.4 52.73 ERROR --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.9.4 44.90 ERROR
r-devel-windows-ix86+x86_64 0.9.4 99.00 41.00 140.00 ERROR
r-patched-linux-x86_64 0.9.4 10.76 16.17 26.93 OK
r-patched-solaris-sparc 0.9.4 255.70 NOTE
r-patched-solaris-x86 0.9.4 58.10 NOTE
r-release-linux-x86_64 0.9.4 10.79 16.05 26.84 OK
r-release-osx-x86_64-mavericks 0.9.4 OK
r-release-windows-ix86+x86_64 0.9.4 189.00 39.00 228.00 OK
r-oldrel-windows-ix86+x86_64 0.9.4 124.00 45.00 169.00 OK

Check Details

Version: 0.9.4
Check: examples
Result: ERROR
    Running examples in ‘WhopGenome-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.9.4
Flags: --no-stop-on-test-error
Check: examples
Result: ERROR
    Running examples in ‘WhopGenome-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9.4
Check: examples
Result: ERROR
    Running examples in ‘WhopGenome-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavor: r-devel-macos-x86_64-clang

Version: 0.9.4
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     tabix/knetfile.c:438:5: warning: ISO C does not support the 'I64' ms_printf length modifier [-Wformat=]
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9.4
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'WhopGenome-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9.4
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'WhopGenome-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RMySQL’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86