CRAN Package Check Results for Package WhopGenome

Last updated on 2017-02-24 11:48:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.4 10.97 17.94 28.91 ERROR
r-devel-linux-x86_64-debian-gcc 0.9.4 11.77 17.66 29.43 ERROR
r-devel-linux-x86_64-fedora-clang 0.9.4 58.55 ERROR --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.9.4 51.47 ERROR --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.9.4 45.91 ERROR --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.9.4 263.00 75.00 338.00 ERROR
r-patched-linux-x86_64 0.9.4 10.48 16.09 26.58 OK
r-patched-solaris-sparc 0.9.4 278.20 NOTE
r-patched-solaris-x86 0.9.4 56.80 NOTE
r-release-linux-x86_64 0.9.4 10.50 15.99 26.48 OK
r-release-osx-x86_64-mavericks 0.9.4 OK
r-release-windows-ix86+x86_64 0.9.4 295.00 64.00 359.00 OK
r-oldrel-windows-ix86+x86_64 0.9.4 208.00 82.00 290.00 OK

Check Details

Version: 0.9.4
Check: compiled code
Result: NOTE
    File ‘WhopGenome/libs/WhopGenome.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.9.4
Check: examples
Result: ERROR
    Running examples in ‘WhopGenome-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.9.4
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘WhopGenome/libs/WhopGenome.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.9.4
Flags: --no-stop-on-test-error
Check: examples
Result: ERROR
    Running examples in ‘WhopGenome-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.9.4
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     tabix/knetfile.c:438:5: warning: ISO C does not support the 'I64' ms_printf length modifier [-Wformat=]
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9.4
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'WhopGenome-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9.4
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'WhopGenome-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: fai_close
    > ### Title: Closes a file previously opened with fai_open
    > ### Aliases: fai_close
    >
    > ### ** Examples
    >
    >
    > ##
    > ## Example :
    > ##
    > faifile <- system.file("extdata", "ex.fasta", package = "WhopGenome")
    > faifh <- fai_open( faifile )
    > stopifnot( faifh != NULL )
    Error in faifh != NULL :
     comparison (2) is possible only for atomic and list types
    Calls: stopifnot
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RMySQL’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86