CRAN Package Check Results for Package aCGH.Spline

Last updated on 2014-04-18 09:49:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2 1.82 45.82 47.65 NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang 2.2 108.14 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2 105.14 NOTE
r-devel-macosx-x86_64-clang 2.2 79.10 NOTE
r-devel-macosx-x86_64-gcc 2.2 NOTE
r-devel-windows-ix86+x86_64 2.2 5.00 91.00 96.00 NOTE
r-patched-linux-x86_64 2.2 1.89 46.67 48.56 NOTE
r-patched-solaris-sparc 2.2 707.70 NOTE
r-patched-solaris-x86 2.2 133.10 NOTE
r-release-linux-ix86 2.2 4.00 83.00 87.00 NOTE
r-release-linux-x86_64 2.2 1.91 46.65 48.56 NOTE
r-release-macosx-x86_64 2.2 NOTE
r-release-windows-ix86+x86_64 2.2 8.00 95.00 103.00 NOTE
r-oldrel-windows-ix86+x86_64 2.2 4.00 71.00 75.00 NOTE

Check Details

Version: 2.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘rJava’ which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2
Check: Rd line widths
Result: NOTE
    Rd file 'MAPlot1.Rd':
     \usage lines wider than 90 characters:
     MAPlot1(x, pch=46, Retcol="black", Excol="red", ylim=c(-5,5), xlim=c(0,20), xlab="log2(mean(cy5, cy3))", ylab="log2(cy5/cy3)", main="MA ... [TRUNCATED]
    
    Rd file 'MAPlot2.Rd':
     \usage lines wider than 90 characters:
     MAPlot2(x, raw, ntyp="percentile", p=0.68, fact=4.5, segN=FALSE, sn=0.75, pch=46, Fitcol="green", Intcol="red", ylim=c(-5,5), xlim=c(0, ... [TRUNCATED]
    
    Rd file 'ProPlot.Rd':
     \usage lines wider than 90 characters:
     ProPlot(x, pch=46, col="black", ylim=c(-3,3), xlim=c(0,length(x[,1])), xlab="Index", ylab="log2 ratio", main="Profile Plot")
    
    Rd file 'fe.extract.Rd':
     \examples lines wider than 100 characters:
     # This would return and data frame containing background subtracted intensity values and positional information.
    
    Rd file 'run.spline.Rd':
     \usage lines wider than 90 characters:
     run.spline(file, format = "FE", raw=TRUE, robust = TRUE, offset=5, knots=1000, ntyp = "percentile",
     p = 0.68, fact = 4.5, segN = FALSE, sn = 0.75, writeFE = FALSE, QC = FALSE, GFF = FALSE, PDF = FALSE)
    
    Rd file 'segN.Rd':
     \examples lines wider than 100 characters:
     legend("bottomright", bty = "n", pch=20, c("Original data values", "Segment medians"), col=c("black", "red"))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc