CRAN Package Check Results for Package aLFQ

Last updated on 2017-02-20 22:58:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.3 5.05 70.20 75.25 OK
r-devel-linux-x86_64-debian-gcc 1.3.3 4.80 69.83 74.63 ERROR
r-devel-linux-x86_64-fedora-clang 1.3.3 165.35 OK --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.3.3 158.17 OK --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.3.3 122.71 ERROR --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.3.3 27.00 164.00 191.00 OK
r-patched-linux-x86_64 1.3.3 4.99 62.07 67.06 OK
r-patched-solaris-sparc 1.3.3 846.20 OK
r-patched-solaris-x86 1.3.3 185.60 OK
r-release-linux-x86_64 1.3.3 5.06 63.38 68.43 OK
r-release-osx-x86_64-mavericks 1.3.3 OK
r-release-windows-ix86+x86_64 1.3.3 23.00 106.00 129.00 OK
r-oldrel-windows-ix86+x86_64 1.3.3 16.00 124.00 140.00 OK

Check Details

Version: 1.3.3
Check: tests
Result: ERROR
     Running ‘units.R’ [8s/7s]
    Running the tests in ‘tests/units.R’ failed.
    Last 13 lines of output:
     2: condition(object)
     3: expect_equal(x, expected, ..., expected.label = label)
     4: compare(object, expected, ...)
     5: protein_inference.ProteinInference(peptide_data, peptide_method = "all", peptide_summary = "median",
     fasta = NA, apex_model = NA, combine_precursors = FALSE, consensus_peptides = FALSE)
     6: data.dt[, list(response = median(peptide_intensity)), by = key(data.dt)]
     7: `[.data.table`(data.dt, , list(response = median(peptide_intensity)), by = key(data.dt))
     8: gforce(thisEnv, jsub, o__, f__, len__, irows)
     9: gmedian(peptide_intensity)
    
     DONE ===========================================================================
     Error: Test failures
     In addition: Warning message:
     Placing tests in `inst/tests/` is deprecated. Please use `tests/testthat/` instead
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.3
Flags: --no-stop-on-test-error
Check: tests
Result: ERROR
     Running ‘units.R’ [11s/15s]
    Running the tests in ‘tests/units.R’ failed.
    Complete output:
     > library(testthat)
     > library(aLFQ)
     >
     >
     > test_package("aLFQ")
     ...................................................1.................................
     Failed -------------------------------------------------------------------------
     1. Error: protein_inference.ProteinInference: all peptide_method (@test_ProteinInference.R#89)
     negative length vectors are not allowed
     1: expect_that(protein_inference.ProteinInference(peptide_data, peptide_method = "all",
     peptide_summary = "median", fasta = NA, apex_model = NA, combine_precursors = FALSE,
     consensus_peptides = FALSE)$response, equals(c(90, 50, 85, 45))) at /Users/ripley/R/packages/tests-devel/aLFQ.Rcheck/aLFQ/tests/test_ProteinInference.R:89
     2: condition(object)
     3: expect_equal(x, expected, ..., expected.label = label)
     4: compare(object, expected, ...)
     5: protein_inference.ProteinInference(peptide_data, peptide_method = "all", peptide_summary = "median",
     fasta = NA, apex_model = NA, combine_precursors = FALSE, consensus_peptides = FALSE)
     6: data.dt[, list(response = median(peptide_intensity)), by = key(data.dt)]
     7: `[.data.table`(data.dt, , list(response = median(peptide_intensity)), by = key(data.dt))
     8: gforce(thisEnv, jsub, o__, f__, len__, irows)
     9: gmedian(peptide_intensity)
    
     DONE ===========================================================================
     Error: Test failures
     In addition: Warning message:
     Placing tests in `inst/tests/` is deprecated. Please use `tests/testthat/` instead
     Execution halted
Flavor: r-devel-macos-x86_64-clang