CRAN Package Check Results for Package abcdeFBA

Last updated on 2016-05-26 11:49:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 0.4 2.91 20.62 23.52 NOTE
r-devel-linux-x86_64-fedora-clang 0.4 41.66 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4 37.34 NOTE
r-devel-osx-x86_64-clang 0.4 49.61 NOTE
r-devel-windows-ix86+x86_64 0.4 6.00 44.00 50.00 NOTE
r-patched-linux-x86_64 0.4 3.05 20.39 23.44 NOTE
r-patched-solaris-sparc 0.4 239.40 NOTE
r-patched-solaris-x86 0.4 66.30 NOTE
r-release-linux-x86_64 0.4 3.13 20.55 23.68 NOTE
r-release-osx-x86_64-mavericks 0.4 WARN
r-release-windows-ix86+x86_64 0.4 10.00 41.00 51.00 NOTE
r-oldrel-windows-ix86+x86_64 0.4 7.00 43.00 50.00 NOTE

Check Details

Version: 0.4
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.4
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘Rglpk’ ‘corrplot’ ‘lattice’ ‘rgl’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4
Check: R code for possible problems
Result: NOTE
    BFD_Processor: no visible global function definition for ‘read.table’
    BFD_Processor: no visible global function definition for ‘write.table’
    BFD_Processor: no visible global function definition for ‘png’
    BFD_Processor: no visible global function definition for ‘plot’
    BFD_Processor: no visible global function definition for ‘dev.off’
    BFD_Processor: no visible global function definition for ‘read.delim’
    BFD_Processor: no visible global function definition for ‘pdf’
    BFD_Processor: no visible global function definition for ‘levelplot’
    BFD_Processor: no visible global function definition for ‘heatmap’
    BFD_Processor: no visible global function definition for ‘cor’
    BFD_Processor: no visible global function definition for ‘corrplot’
    DEGREE_MEASURE: no visible global function definition for ‘write.table’
    Exhaustive_double_deletion: no visible global function definition for
     ‘combn’
    Exhaustive_double_deletion: no visible global function definition for
     ‘write.table’
    Exhaustive_single_deletion: no visible global function definition for
     ‘write.table’
    Exhaustive_single_deletion: no visible global function definition for
     ‘hist’
    Exhaustive_single_deletion: no visible global function definition for
     ‘pdf’
    Exhaustive_single_deletion: no visible global function definition for
     ‘barplot’
    Exhaustive_single_deletion: no visible global function definition for
     ‘dev.off’
    FBA_solve: no visible global function definition for ‘Rglpk_solve_LP’
    FLUX_VAR_ANALYSIS: no visible global function definition for
     ‘write.table’
    PERTURBATION_analysis: no visible global function definition for ‘plot’
    PERTURBATION_analysis: no visible global function definition for ‘png’
    PERTURBATION_analysis: no visible global function definition for
     ‘dev.off’
    PERTURBATION_analysis: no visible global function definition for
     ‘write.table’
    PHPP: no visible global function definition for ‘levelplot’
    PHPP: no visible global function definition for ‘persp3d’
    PHPP: no visible global function definition for ‘play3d’
    PHPP: no visible global function definition for ‘spin3d’
    PLOT_FVA_SPAN: no visible global function definition for ‘pdf’
    PLOT_FVA_SPAN: no visible global function definition for ‘barplot’
    PLOT_FVA_SPAN: no visible global function definition for ‘par’
    PLOT_FVA_SPAN: no visible global function definition for ‘dev.off’
    SINGLE_DEL_FLUXOME: no visible global function definition for ‘pdf’
    SINGLE_DEL_FLUXOME: no visible global function definition for ‘barplot’
    SINGLE_DEL_FLUXOME: no visible global function definition for ‘par’
    SINGLE_DEL_FLUXOME: no visible global function definition for ‘dev.off’
    flux_difference_plotter: no visible global function definition for
     ‘pdf’
    flux_difference_plotter: no visible global function definition for
     ‘barplot’
    flux_difference_plotter: no visible global function definition for
     ‘par’
    flux_difference_plotter: no visible global function definition for
     ‘dev.off’
    Undefined global functions or variables:
     Rglpk_solve_LP barplot combn cor corrplot dev.off heatmap hist
     levelplot par pdf persp3d play3d plot png read.delim read.table
     spin3d write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf", "png")
     importFrom("graphics", "barplot", "hist", "par", "plot")
     importFrom("stats", "cor", "heatmap")
     importFrom("utils", "combn", "read.delim", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.4
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyPackages in Depends field not imported from:
     ‘Rglpk’ ‘corrplot’ ‘lattice’ ‘rgl’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4
Check: R code for possible problems
Result: NOTE
    BFD_Processor: no visible global function definition for 'levelplot'
    BFD_Processor: no visible global function definition for 'corrplot'
    FBA_solve: no visible global function definition for 'Rglpk_solve_LP'
    PHPP: no visible global function definition for 'levelplot'
    PHPP: no visible global function definition for 'persp3d'
    PHPP: no visible global function definition for 'play3d'
    PHPP: no visible global function definition for 'spin3d'
Flavor: r-oldrel-windows-ix86+x86_64