CRAN Package Check Results for Package abcdeFBA

Last updated on 2015-08-04 19:50:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4 2.73 19.78 22.52 NOTE
r-devel-linux-x86_64-debian-gcc 0.4 2.82 19.60 22.42 NOTE
r-devel-linux-x86_64-fedora-clang 0.4 40.95 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4 39.59 NOTE
r-devel-osx-x86_64-clang 0.4 39.70 NOTE
r-devel-windows-ix86+x86_64 0.4 11.00 34.00 45.00 NOTE
r-patched-linux-x86_64 0.4 2.96 20.18 23.14 NOTE
r-patched-solaris-sparc 0.4 255.00 NOTE
r-patched-solaris-x86 0.4 75.30 NOTE
r-release-linux-x86_64 0.4 2.92 19.87 22.79 NOTE
r-release-osx-x86_64-mavericks 0.4 NOTE
r-release-windows-ix86+x86_64 0.4 11.00 35.00 46.00 NOTE
r-oldrel-windows-ix86+x86_64 0.4 12.00 57.00 69.00 NOTE

Check Details

Version: 0.4
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.4
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.4
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘Rglpk’ ‘corrplot’ ‘lattice’ ‘rgl’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4
Check: R code for possible problems
Result: NOTE
    BFD_Processor: no visible global function definition for ‘read.table’
    BFD_Processor: no visible global function definition for ‘write.table’
    BFD_Processor: no visible global function definition for ‘png’
    BFD_Processor: no visible global function definition for ‘plot’
    BFD_Processor: no visible global function definition for ‘dev.off’
    BFD_Processor: no visible global function definition for ‘read.delim’
    BFD_Processor: no visible global function definition for ‘pdf’
    BFD_Processor: no visible global function definition for ‘levelplot’
    BFD_Processor: no visible global function definition for ‘heatmap’
    BFD_Processor: no visible global function definition for ‘cor’
    BFD_Processor: no visible global function definition for ‘corrplot’
    DEGREE_MEASURE: no visible global function definition for ‘write.table’
    Exhaustive_double_deletion: no visible global function definition for
     ‘combn’
    Exhaustive_double_deletion: no visible global function definition for
     ‘write.table’
    Exhaustive_single_deletion: no visible global function definition for
     ‘write.table’
    Exhaustive_single_deletion: no visible global function definition for
     ‘hist’
    Exhaustive_single_deletion: no visible global function definition for
     ‘pdf’
    Exhaustive_single_deletion: no visible global function definition for
     ‘barplot’
    Exhaustive_single_deletion: no visible global function definition for
     ‘dev.off’
    FBA_solve: no visible global function definition for ‘Rglpk_solve_LP’
    FLUX_VAR_ANALYSIS: no visible global function definition for
     ‘write.table’
    PERTURBATION_analysis: no visible global function definition for ‘plot’
    PERTURBATION_analysis: no visible global function definition for ‘png’
    PERTURBATION_analysis: no visible global function definition for
     ‘dev.off’
    PERTURBATION_analysis: no visible global function definition for
     ‘write.table’
    PHPP: no visible global function definition for ‘levelplot’
    PHPP: no visible global function definition for ‘persp3d’
    PHPP: no visible global function definition for ‘play3d’
    PHPP: no visible global function definition for ‘spin3d’
    PLOT_FVA_SPAN: no visible global function definition for ‘pdf’
    PLOT_FVA_SPAN: no visible global function definition for ‘barplot’
    PLOT_FVA_SPAN: no visible global function definition for ‘par’
    PLOT_FVA_SPAN: no visible global function definition for ‘dev.off’
    SINGLE_DEL_FLUXOME: no visible global function definition for ‘pdf’
    SINGLE_DEL_FLUXOME: no visible global function definition for ‘barplot’
    SINGLE_DEL_FLUXOME: no visible global function definition for ‘par’
    SINGLE_DEL_FLUXOME: no visible global function definition for ‘dev.off’
    flux_difference_plotter: no visible global function definition for
     ‘pdf’
    flux_difference_plotter: no visible global function definition for
     ‘barplot’
    flux_difference_plotter: no visible global function definition for
     ‘par’
    flux_difference_plotter: no visible global function definition for
     ‘dev.off’
    Undefined global functions or variables:
     Rglpk_solve_LP barplot combn cor corrplot dev.off heatmap hist
     levelplot par pdf persp3d play3d plot png read.delim read.table
     spin3d write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf", "png")
     importFrom("graphics", "barplot", "hist", "par", "plot")
     importFrom("stats", "cor", "heatmap")
     importFrom("utils", "combn", "read.delim", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.4
Check: R code for possible problems
Result: NOTE
    BFD_Processor: no visible global function definition for ‘levelplot’
    BFD_Processor: no visible global function definition for ‘corrplot’
    FBA_solve: no visible global function definition for ‘Rglpk_solve_LP’
    PHPP: no visible global function definition for ‘levelplot’
    PHPP: no visible global function definition for ‘persp3d’
    PHPP: no visible global function definition for ‘play3d’
    PHPP: no visible global function definition for ‘spin3d’
    Undefined global functions or variables:
     Rglpk_solve_LP corrplot levelplot persp3d play3d spin3d
Flavor: r-devel-osx-x86_64-clang

Version: 0.4
Check: R code for possible problems
Result: NOTE
    BFD_Processor: no visible global function definition for ‘levelplot’
    BFD_Processor: no visible global function definition for ‘corrplot’
    FBA_solve: no visible global function definition for ‘Rglpk_solve_LP’
    PHPP: no visible global function definition for ‘levelplot’
    PHPP: no visible global function definition for ‘persp3d’
    PHPP: no visible global function definition for ‘play3d’
    PHPP: no visible global function definition for ‘spin3d’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64