CRAN Package Check Results for Maintainer ‘Abdelmoneim Amer Desouki <abdelmoneim.amer at uni-duesseldorf.de>’

Last updated on 2019-10-18 18:48:14 CEST.

Package ERROR NOTE OK
sybilccFBA 10 2
sybilcycleFreeFlux 1 9 2
sybilDynFBA 12

Package sybilccFBA

Current CRAN status: NOTE: 10, OK: 2

Version: 3.0.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'moment_20191018_0205.lp'
Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.0.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘moment_20191018_1113.lp’
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.0.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘cplexAPI’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.0.0
Check: installed package size
Result: NOTE
     installed size is 5.2Mb
     sub-directories of 1Mb or more:
     extdata 4.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.0.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 1 marked UTF-8 string
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.0.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘moment_20191013_0800.lp’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.0.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘moment_20191014_1026.lp’
Flavor: r-devel-linux-x86_64-fedora-gcc

Package sybilcycleFreeFlux

Current CRAN status: ERROR: 1, NOTE: 9, OK: 2

Version: 2.0.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'cfFVA1_cnd_det.csv' 'cfFVA1_cnd_res.csv'
     'glpk_llFBA_20191018_0205.lp'
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.0.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘cfFVA1_cnd_det.csv’ ‘cfFVA1_cnd_res.csv’
     ‘glpk_llFBA_20191018_1113.lp’
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘cplexAPI’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘cfFVA1_cnd_det.csv’ ‘cfFVA1_cnd_res.csv’
     ‘glpk_llFBA_20191013_0800.lp’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.0.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘cfFVA1_cnd_det.csv’ ‘cfFVA1_cnd_res.csv’
     ‘glpk_llFBA_20191014_1026.lp’
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2.0.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘cplexAPI’ ‘glpkAPI’
Flavor: r-oldrel-osx-x86_64

Version: 2.0.0
Check: examples
Result: ERROR
    Running examples in ‘sybilcycleFreeFlux-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cfFBA
    > ### Title: cycle free flux
    > ### Aliases: cfFBA lrFBA
    > ### Keywords: cycle free flux loopless FBA
    >
    > ### ** Examples
    >
    > ##---- Should be DIRECTLY executable !! ----
    > ##-- ==> Define data, use random,
    > ##-- or do help(data=index) for the standard data sets.
    > data(iAF1260)
    > model=iAF1260
    > fba=optimizeProb(model)
    Loading required package: glpkAPI
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘glpkAPI’
    Error in checkDefaultMethod(solver, method, pType) :
     package ‘glpkAPI’ not found
    Calls: optimizeProb -> optimizeProb -> .local -> sysBiolAlg
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package sybilDynFBA

Current CRAN status: OK: 12