CRAN Package Check Results for Package ade4TkGUI

Last updated on 2015-07-07 23:47:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2-6 0.98 35.96 36.94 NOTE
r-devel-linux-x86_64-debian-gcc 0.2-6 0.99 35.39 36.38 NOTE
r-devel-linux-x86_64-fedora-clang 0.2-6 66.26 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2-6 64.54 NOTE
r-devel-osx-x86_64-clang 0.2-6 65.01 NOTE
r-devel-windows-ix86+x86_64 0.2-6 6.00 50.00 56.00 NOTE
r-patched-linux-x86_64 0.2-6 1.02 35.24 36.26 NOTE
r-patched-solaris-sparc 0.2-6 422.10 NOTE
r-patched-solaris-x86 0.2-6 91.00 NOTE
r-release-linux-x86_64 0.2-6 1.02 35.47 36.49 NOTE
r-release-osx-x86_64-mavericks 0.2-6 NOTE
r-release-windows-ix86+x86_64 0.2-6 6.00 48.00 54.00 NOTE
r-oldrel-windows-ix86+x86_64 0.2-6 4.00 53.00 57.00 NOTE

Check Details

Version: 0.2-6
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.2-6
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘ade4’ ‘tcltk’
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘grDevices’ ‘tkrplot’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2-6
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘newGr’
    Found the platform-specific devices:
     ‘quartz’ ‘windows’ ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    ade4TkGUI : <anonymous>: no visible global function definition for
     ‘help.start’
    ade4TkGUI : <anonymous>: no visible global function definition for
     ‘help’
    chooseaxes: no visible global function definition for ‘barplot’
    choosepackage: Error while checking: invalid ‘envir’ argument
    dialog.MCTests : <anonymous>: no visible global function definition for
     ‘help’
    dialog.MCTests : execcomp: no visible global function definition for
     ‘plot’
    dialog.between : <anonymous>: no visible global function definition for
     ‘help’
    dialog.cca : <anonymous>: no visible global function definition for
     ‘help’
    dialog.coinertia : <anonymous>: no visible global function definition
     for ‘help’
    dialog.discrimin : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dpcoa : <anonymous>: no visible global function definition for
     ‘help’
    dialog.dudi.acm : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.coa : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.dec : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.display : plotfunc: no visible global function definition
     for ‘plot’
    dialog.dudi.display : tabvalue: no visible global function definition
     for ‘par’
    dialog.dudi.display : w1plotfunc: no visible global function definition
     for ‘dotchart’
    dialog.dudi.display : w2plotfunc: no visible global function definition
     for ‘dotchart’
    dialog.dudi.display : cwplotfunc: no visible global function definition
     for ‘dotchart’
    dialog.dudi.display : lwplotfunc: no visible global function definition
     for ‘dotchart’
    dialog.dudi.display : eigplotfunc: no visible global function
     definition for ‘barplot’
    dialog.dudi.display : dpcoaeigplotfunc: no visible global function
     definition for ‘barplot’
    dialog.dudi.display : <anonymous>: no visible global function
     definition for ‘help’
    dialog.dudi.fca : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.fpca : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.mix : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.nsc : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.pca : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.pco : <anonymous>: no visible global function definition
     for ‘help’
    dialog.pcaiv : <anonymous>: no visible global function definition for
     ‘help’
    dialog.pcaivortho : <anonymous>: no visible global function definition
     for ‘help’
    dialog.s.arrow : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.chull : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.class : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.corcircle : <anonymous>: no visible global function definition
     for ‘help’
    dialog.s.label : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.match : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.value : <anonymous>: no visible global function definition for
     ‘help’
    dialog.within : <anonymous>: no visible global function definition for
     ‘help’
    dudisp : <anonymous>: no visible global function definition for ‘help’
    explore : plot.s.dens: no visible global function definition for ‘par’
    explore : plot.s.dens: no visible global function definition for ‘plot’
    explore : plot.s.dens: no visible global function definition for
     ‘polygon’
    explore : plot.s.dens: no visible global function definition for ‘box’
    explore : plot.s: no visible global function definition for ‘par’
    explore : plot.s.small: no visible global function definition for ‘par’
    explore : plot.s.small: no visible global function definition for
     ‘rect’
    explore : plot.s.change.origin: no visible global function definition
     for ‘tkrreplot’
    explore : plot.s.change.origin.find: no visible global function
     definition for ‘tkrreplot’
    explore : plot.s.refresh: no visible global function definition for
     ‘tkrreplot’
    explore : redo.plot.s.zoomfac: no visible global function definition
     for ‘tkrreplot’
    explore : draw.rect: no visible global function definition for
     ‘tkrreplot’
    explore : addonelabel: no visible global function definition for
     ‘tkrreplot’
    explore : removelabel: no visible global function definition for
     ‘tkrreplot’
    explore : addalllabel: no visible global function definition for
     ‘tkrreplot’
    explore : addselectlabel : okbutton.f1.tt2: no visible global function
     definition for ‘tkrreplot’
    explore : labelbyvalues : ok.button.labval: no visible global function
     definition for ‘tkrreplot’
    explore : copytoclip: no visible global function definition for
     ‘tkrreplot’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘postscript’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘pdf’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘pictex’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘xfig’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘png’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘jpeg’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘dev.off’
    explore: no visible global function definition for ‘tkrplot’
    explore: no visible global function definition for ‘density’
    newGr: no visible global function definition for ‘x11’
    newGr: no visible global function definition for ‘quartz’
    ordiClust : fplot: no visible global function definition for ‘rainbow’
    ordiClust : fplot: no visible global function definition for ‘barplot’
    ordiClust : fplot: no visible global function definition for ‘plot’
    ordiClust : fplot: no visible global function definition for ‘abline’
    ordiClust : fplot: no visible global function definition for ‘lines’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘postscript’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘pdf’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘pictex’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘xfig’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘png’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘jpeg’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘dev.off’
    ordiClust: no visible global function definition for ‘tkrplot’
    ordiClust : doClust: no visible global function definition for ‘hclust’
    ordiClust : doClust: no visible global function definition for ‘dist’
    ordiClust : doClust: no visible global function definition for ‘cutree’
    ordiClust : doCutk: no visible global function definition for ‘cutree’
    ordiClust : doCutk: no visible global function definition for ‘between’
    ordiClust : doCutk: no visible global function definition for
     ‘randtest.between’
    ordiClust : doCuth: no visible global function definition for ‘cutree’
    ordiClust : doCuth: no visible global function definition for ‘between’
    ordiClust : doCuth: no visible global function definition for
     ‘randtest.between’
    ordiClust : doTest: no visible global function definition for ‘cutree’
    ordiClust : doTest: no visible global function definition for ‘between’
    ordiClust : doTest: no visible global function definition for
     ‘randtest.between’
    ordiClust : doDraw: no visible global function definition for ‘cutree’
    ordiClust : doDraw: no visible global function definition for ‘between’
    ordiClust : <anonymous>: no visible global function definition for
     ‘help’
    ordiClust : <anonymous>: no visible global function definition for
     ‘tkrreplot’
    ordiClust : f: no visible global function definition for ‘cutree’
    ordiClust : f: no visible global function definition for ‘between’
    ordiClust : f: no visible global function definition for
     ‘randtest.between’
    ordiClust : f: no visible global function definition for ‘tkrreplot’
    ordiClust: no visible global function definition for ‘tkrreplot’
    ordiClust : keyup: no visible global function definition for ‘cutree’
    ordiClust : keyup: no visible global function definition for ‘between’
    ordiClust : keyup: no visible global function definition for
     ‘randtest.between’
    ordiClust : keyup: no visible global function definition for
     ‘tkrreplot’
    ordiClust : keydown: no visible global function definition for ‘cutree’
    ordiClust : keydown: no visible global function definition for
     ‘between’
    ordiClust : keydown: no visible global function definition for
     ‘randtest.between’
    ordiClust : keydown: no visible global function definition for
     ‘tkrreplot’
    ordiClust : kret: no visible global function definition for ‘tkrreplot’
    outgraph : savefic: no visible global function definition for ‘dev.cur’
    outgraph : savefic: no visible global function definition for
     ‘postscript’
    outgraph : savefic: no visible global function definition for ‘pdf’
    outgraph : savefic: no visible global function definition for ‘pictex’
    outgraph : savefic: no visible global function definition for ‘xfig’
    outgraph : savefic: no visible global function definition for ‘png’
    outgraph : savefic: no visible global function definition for ‘jpeg’
    outgraph : savefic: no visible global function definition for ‘dev.set’
    outgraph : savefic: no visible global function definition for
     ‘dev.copy’
    outgraph : savefic: no visible global function definition for ‘dev.off’
    readtable : <anonymous>: no visible global function definition for
     ‘help’
    rewriteHistory: no visible global function definition for ‘savehistory’
    rewriteHistory: no visible global function definition for ‘loadhistory’
    selectGr: no visible global function definition for ‘dev.list’
    selectGr: no visible global function definition for ‘dev.cur’
    selectGr: no visible global function definition for ‘dev.set’
    Undefined global functions or variables:
     abline barplot between box cutree density dev.copy dev.cur dev.list
     dev.off dev.set dist dotchart hclust help help.start jpeg lines
     loadhistory par pdf pictex plot png polygon postscript quartz rainbow
     randtest.between rect savehistory tkrplot tkrreplot x11 xfig
    
    Found the following assignments to the global environment:
    File ‘ade4TkGUI/R/ade4TkGUI.R’:
     assign("cmdlist", "cmdlist", envir = .GlobalEnv)
     assign("winlist", 1, envir = .GlobalEnv)
    File ‘ade4TkGUI/R/choose.R’:
     assign("winlist", get("winlist", envir = .GlobalEnv) + 1, envir = .GlobalEnv)
     assign("cmdlist", "cmdlist", envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.MCTests.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(randtestname), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.between.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.cca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.coinertia.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.discrimin.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dpcoa.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.acm.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.coa.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.dec.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.display.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.dudi.fca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.fpca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.mix.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.nsc.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.pca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.pco.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.pcaiv.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.pcaivortho.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.s.arrow.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.chull.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.class.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.label.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.match.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.value.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.within.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/ordiClust.R’:
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
    
    Found the following calls to data() loading into the global environment:
    File ‘ade4TkGUI/R/choose.R’:
     data(list = choix)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang

Version: 0.2-6
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘newGr’
    Found the platform-specific devices:
     ‘quartz’ ‘windows’ ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    ade4TkGUI : <anonymous>: no visible global function definition for
     ‘help.start’
    ade4TkGUI : <anonymous>: no visible global function definition for
     ‘help’
    chooseaxes: no visible global function definition for ‘barplot’
    choosepackage: Error while checking: invalid 'envir' argument
    dialog.MCTests : <anonymous>: no visible global function definition for
     ‘help’
    dialog.MCTests : execcomp: no visible global function definition for
     ‘plot’
    dialog.between : <anonymous>: no visible global function definition for
     ‘help’
    dialog.cca : <anonymous>: no visible global function definition for
     ‘help’
    dialog.coinertia : <anonymous>: no visible global function definition
     for ‘help’
    dialog.discrimin : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dpcoa : <anonymous>: no visible global function definition for
     ‘help’
    dialog.dudi.acm : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.coa : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.dec : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.display : plotfunc: no visible global function definition
     for ‘plot’
    dialog.dudi.display : tabvalue: no visible global function definition
     for ‘par’
    dialog.dudi.display : w1plotfunc: no visible global function definition
     for ‘dotchart’
    dialog.dudi.display : w2plotfunc: no visible global function definition
     for ‘dotchart’
    dialog.dudi.display : cwplotfunc: no visible global function definition
     for ‘dotchart’
    dialog.dudi.display : lwplotfunc: no visible global function definition
     for ‘dotchart’
    dialog.dudi.display : eigplotfunc: no visible global function
     definition for ‘barplot’
    dialog.dudi.display : dpcoaeigplotfunc: no visible global function
     definition for ‘barplot’
    dialog.dudi.display : <anonymous>: no visible global function
     definition for ‘help’
    dialog.dudi.fca : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.fpca : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.mix : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.nsc : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.pca : <anonymous>: no visible global function definition
     for ‘help’
    dialog.dudi.pco : <anonymous>: no visible global function definition
     for ‘help’
    dialog.pcaiv : <anonymous>: no visible global function definition for
     ‘help’
    dialog.pcaivortho : <anonymous>: no visible global function definition
     for ‘help’
    dialog.s.arrow : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.chull : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.class : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.corcircle : <anonymous>: no visible global function definition
     for ‘help’
    dialog.s.label : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.match : <anonymous>: no visible global function definition for
     ‘help’
    dialog.s.value : <anonymous>: no visible global function definition for
     ‘help’
    dialog.within : <anonymous>: no visible global function definition for
     ‘help’
    dudisp : <anonymous>: no visible global function definition for ‘help’
    explore : plot.s.dens: no visible global function definition for ‘par’
    explore : plot.s.dens: no visible global function definition for ‘plot’
    explore : plot.s.dens: no visible global function definition for
     ‘polygon’
    explore : plot.s.dens: no visible global function definition for ‘box’
    explore : plot.s: no visible global function definition for ‘par’
    explore : plot.s.small: no visible global function definition for ‘par’
    explore : plot.s.small: no visible global function definition for
     ‘rect’
    explore : plot.s.change.origin: no visible global function definition
     for ‘tkrreplot’
    explore : plot.s.change.origin.find: no visible global function
     definition for ‘tkrreplot’
    explore : plot.s.refresh: no visible global function definition for
     ‘tkrreplot’
    explore : redo.plot.s.zoomfac: no visible global function definition
     for ‘tkrreplot’
    explore : draw.rect: no visible global function definition for
     ‘tkrreplot’
    explore : addonelabel: no visible global function definition for
     ‘tkrreplot’
    explore : removelabel: no visible global function definition for
     ‘tkrreplot’
    explore : addalllabel: no visible global function definition for
     ‘tkrreplot’
    explore : addselectlabel : okbutton.f1.tt2: no visible global function
     definition for ‘tkrreplot’
    explore : labelbyvalues : ok.button.labval: no visible global function
     definition for ‘tkrreplot’
    explore : copytoclip: no visible global function definition for
     ‘tkrreplot’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘postscript’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘pdf’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘pictex’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘xfig’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘png’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘jpeg’
    explore : outgraph.explore : savefic: no visible global function
     definition for ‘dev.off’
    explore: no visible global function definition for ‘tkrplot’
    explore: no visible global function definition for ‘density’
    newGr: no visible global function definition for ‘x11’
    newGr: no visible global function definition for ‘quartz’
    ordiClust : fplot: no visible global function definition for ‘rainbow’
    ordiClust : fplot: no visible global function definition for ‘barplot’
    ordiClust : fplot: no visible global function definition for ‘plot’
    ordiClust : fplot: no visible global function definition for ‘abline’
    ordiClust : fplot: no visible global function definition for ‘lines’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘postscript’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘pdf’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘pictex’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘xfig’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘png’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘jpeg’
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for ‘dev.off’
    ordiClust: no visible global function definition for ‘tkrplot’
    ordiClust : doClust: no visible global function definition for ‘hclust’
    ordiClust : doClust: no visible global function definition for ‘dist’
    ordiClust : doClust: no visible global function definition for ‘cutree’
    ordiClust : doCutk: no visible global function definition for ‘cutree’
    ordiClust : doCutk: no visible global function definition for ‘between’
    ordiClust : doCutk: no visible global function definition for
     ‘randtest.between’
    ordiClust : doCuth: no visible global function definition for ‘cutree’
    ordiClust : doCuth: no visible global function definition for ‘between’
    ordiClust : doCuth: no visible global function definition for
     ‘randtest.between’
    ordiClust : doTest: no visible global function definition for ‘cutree’
    ordiClust : doTest: no visible global function definition for ‘between’
    ordiClust : doTest: no visible global function definition for
     ‘randtest.between’
    ordiClust : doDraw: no visible global function definition for ‘cutree’
    ordiClust : doDraw: no visible global function definition for ‘between’
    ordiClust : <anonymous>: no visible global function definition for
     ‘help’
    ordiClust : <anonymous>: no visible global function definition for
     ‘tkrreplot’
    ordiClust : f: no visible global function definition for ‘cutree’
    ordiClust : f: no visible global function definition for ‘between’
    ordiClust : f: no visible global function definition for
     ‘randtest.between’
    ordiClust : f: no visible global function definition for ‘tkrreplot’
    ordiClust: no visible global function definition for ‘tkrreplot’
    ordiClust : keyup: no visible global function definition for ‘cutree’
    ordiClust : keyup: no visible global function definition for ‘between’
    ordiClust : keyup: no visible global function definition for
     ‘randtest.between’
    ordiClust : keyup: no visible global function definition for
     ‘tkrreplot’
    ordiClust : keydown: no visible global function definition for ‘cutree’
    ordiClust : keydown: no visible global function definition for
     ‘between’
    ordiClust : keydown: no visible global function definition for
     ‘randtest.between’
    ordiClust : keydown: no visible global function definition for
     ‘tkrreplot’
    ordiClust : kret: no visible global function definition for ‘tkrreplot’
    outgraph : savefic: no visible global function definition for ‘dev.cur’
    outgraph : savefic: no visible global function definition for
     ‘postscript’
    outgraph : savefic: no visible global function definition for ‘pdf’
    outgraph : savefic: no visible global function definition for ‘pictex’
    outgraph : savefic: no visible global function definition for ‘xfig’
    outgraph : savefic: no visible global function definition for ‘png’
    outgraph : savefic: no visible global function definition for ‘jpeg’
    outgraph : savefic: no visible global function definition for ‘dev.set’
    outgraph : savefic: no visible global function definition for
     ‘dev.copy’
    outgraph : savefic: no visible global function definition for ‘dev.off’
    readtable : <anonymous>: no visible global function definition for
     ‘help’
    rewriteHistory: no visible global function definition for ‘savehistory’
    rewriteHistory: no visible global function definition for ‘loadhistory’
    selectGr: no visible global function definition for ‘dev.list’
    selectGr: no visible global function definition for ‘dev.cur’
    selectGr: no visible global function definition for ‘dev.set’
    Undefined global functions or variables:
     abline barplot between box cutree density dev.copy dev.cur dev.list
     dev.off dev.set dist dotchart hclust help help.start jpeg lines
     loadhistory par pdf pictex plot png polygon postscript quartz rainbow
     randtest.between rect savehistory tkrplot tkrreplot x11 xfig
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2-6
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘newGr’
    Found the platform-specific devices:
     ‘quartz’ ‘windows’ ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    explore : plot.s.change.origin: no visible global function definition
     for ‘tkrreplot’
    explore : plot.s.change.origin.find: no visible global function
     definition for ‘tkrreplot’
    explore : plot.s.refresh: no visible global function definition for
     ‘tkrreplot’
    explore : redo.plot.s.zoomfac: no visible global function definition
     for ‘tkrreplot’
    explore : draw.rect: no visible global function definition for
     ‘tkrreplot’
    explore : addonelabel: no visible global function definition for
     ‘tkrreplot’
    explore : removelabel: no visible global function definition for
     ‘tkrreplot’
    explore : addalllabel: no visible global function definition for
     ‘tkrreplot’
    explore : addselectlabel : okbutton.f1.tt2: no visible global function
     definition for ‘tkrreplot’
    explore : labelbyvalues : ok.button.labval: no visible global function
     definition for ‘tkrreplot’
    explore : copytoclip: no visible global function definition for
     ‘tkrreplot’
    explore: no visible global function definition for ‘tkrplot’
    ordiClust: no visible global function definition for ‘tkrplot’
    ordiClust : doCutk: no visible global function definition for ‘between’
    ordiClust : doCutk: no visible global function definition for
     ‘randtest.between’
    ordiClust : doCuth: no visible global function definition for ‘between’
    ordiClust : doCuth: no visible global function definition for
     ‘randtest.between’
    ordiClust : doTest: no visible global function definition for ‘between’
    ordiClust : doTest: no visible global function definition for
     ‘randtest.between’
    ordiClust : doDraw: no visible global function definition for ‘between’
    ordiClust : <anonymous>: no visible global function definition for
     ‘tkrreplot’
    ordiClust : f: no visible global function definition for ‘between’
    ordiClust : f: no visible global function definition for
     ‘randtest.between’
    ordiClust : f: no visible global function definition for ‘tkrreplot’
    ordiClust: no visible global function definition for ‘tkrreplot’
    ordiClust : keyup: no visible global function definition for ‘between’
    ordiClust : keyup: no visible global function definition for
     ‘randtest.between’
    ordiClust : keyup: no visible global function definition for
     ‘tkrreplot’
    ordiClust : keydown: no visible global function definition for
     ‘between’
    ordiClust : keydown: no visible global function definition for
     ‘randtest.between’
    ordiClust : keydown: no visible global function definition for
     ‘tkrreplot’
    ordiClust : kret: no visible global function definition for ‘tkrreplot’
    Undefined global functions or variables:
     between randtest.between tkrplot tkrreplot
    
    Found the following assignments to the global environment:
    File ‘ade4TkGUI/R/ade4TkGUI.R’:
     assign("cmdlist", "cmdlist", envir = .GlobalEnv)
     assign("winlist", 1, envir = .GlobalEnv)
    File ‘ade4TkGUI/R/choose.R’:
     assign("winlist", get("winlist", envir = .GlobalEnv) + 1, envir = .GlobalEnv)
     assign("cmdlist", "cmdlist", envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.MCTests.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(randtestname), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.between.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.cca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.coinertia.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.discrimin.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dpcoa.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.acm.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.coa.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.dec.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.display.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.dudi.fca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.fpca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.mix.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.nsc.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.pca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.pco.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.pcaiv.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.pcaivortho.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.s.arrow.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.chull.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.class.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.label.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.match.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.value.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.within.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/ordiClust.R’:
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
    
    Found the following calls to data() loading into the global environment:
    File ‘ade4TkGUI/R/choose.R’:
     data(list = choix)
    See section ‘Good practice’ in ‘?data’.
Flavor: r-devel-osx-x86_64-clang

Version: 0.2-6
Check: R code for possible problems
Result: NOTE
    ade4TkGUI : <anonymous>: no visible global function definition for
     'help.start'
    ade4TkGUI : <anonymous>: no visible global function definition for
     'help'
    chooseaxes: no visible global function definition for 'barplot'
    choosepackage: no visible global function definition for 'data'
    choosepackage : <anonymous>: no visible global function definition for
     'help'
    dialog.MCTests : <anonymous>: no visible global function definition for
     'help'
    dialog.MCTests : execcomp: no visible global function definition for
     'plot'
    dialog.between : <anonymous>: no visible global function definition for
     'help'
    dialog.cca : <anonymous>: no visible global function definition for
     'help'
    dialog.coinertia : <anonymous>: no visible global function definition
     for 'help'
    dialog.discrimin : <anonymous>: no visible global function definition
     for 'help'
    dialog.dpcoa : <anonymous>: no visible global function definition for
     'help'
    dialog.dudi.acm : <anonymous>: no visible global function definition
     for 'help'
    dialog.dudi.coa : <anonymous>: no visible global function definition
     for 'help'
    dialog.dudi.dec : <anonymous>: no visible global function definition
     for 'help'
    dialog.dudi.display : plotfunc: no visible global function definition
     for 'plot'
    dialog.dudi.display : tabvalue: no visible global function definition
     for 'par'
    dialog.dudi.display : w1plotfunc: no visible global function definition
     for 'dotchart'
    dialog.dudi.display : w2plotfunc: no visible global function definition
     for 'dotchart'
    dialog.dudi.display : cwplotfunc: no visible global function definition
     for 'dotchart'
    dialog.dudi.display : lwplotfunc: no visible global function definition
     for 'dotchart'
    dialog.dudi.display : eigplotfunc: no visible global function
     definition for 'barplot'
    dialog.dudi.display : dpcoaeigplotfunc: no visible global function
     definition for 'barplot'
    dialog.dudi.display : <anonymous>: no visible global function
     definition for 'help'
    dialog.dudi.fca : <anonymous>: no visible global function definition
     for 'help'
    dialog.dudi.fpca : <anonymous>: no visible global function definition
     for 'help'
    dialog.dudi.mix : <anonymous>: no visible global function definition
     for 'help'
    dialog.dudi.nsc : <anonymous>: no visible global function definition
     for 'help'
    dialog.dudi.pca : <anonymous>: no visible global function definition
     for 'help'
    dialog.dudi.pco : <anonymous>: no visible global function definition
     for 'help'
    dialog.pcaiv : <anonymous>: no visible global function definition for
     'help'
    dialog.pcaivortho : <anonymous>: no visible global function definition
     for 'help'
    dialog.s.arrow : <anonymous>: no visible global function definition for
     'help'
    dialog.s.chull : <anonymous>: no visible global function definition for
     'help'
    dialog.s.class : <anonymous>: no visible global function definition for
     'help'
    dialog.s.corcircle : <anonymous>: no visible global function definition
     for 'help'
    dialog.s.label : <anonymous>: no visible global function definition for
     'help'
    dialog.s.match : <anonymous>: no visible global function definition for
     'help'
    dialog.s.value : <anonymous>: no visible global function definition for
     'help'
    dialog.within : <anonymous>: no visible global function definition for
     'help'
    dudisp : <anonymous>: no visible global function definition for 'help'
    explore : plot.s.dens: no visible global function definition for 'par'
    explore : plot.s.dens: no visible global function definition for 'plot'
    explore : plot.s.dens: no visible global function definition for
     'polygon'
    explore : plot.s.dens: no visible global function definition for 'box'
    explore : plot.s: no visible global function definition for 'par'
    explore : plot.s.small: no visible global function definition for 'par'
    explore : plot.s.small: no visible global function definition for
     'rect'
    explore : plot.s.change.origin: no visible global function definition
     for 'tkrreplot'
    explore : plot.s.change.origin.find: no visible global function
     definition for 'tkrreplot'
    explore : plot.s.refresh: no visible global function definition for
     'tkrreplot'
    explore : redo.plot.s.zoomfac: no visible global function definition
     for 'tkrreplot'
    explore : draw.rect: no visible global function definition for
     'tkrreplot'
    explore : addonelabel: no visible global function definition for
     'tkrreplot'
    explore : removelabel: no visible global function definition for
     'tkrreplot'
    explore : addalllabel: no visible global function definition for
     'tkrreplot'
    explore : addselectlabel : okbutton.f1.tt2: no visible global function
     definition for 'tkrreplot'
    explore : labelbyvalues : ok.button.labval: no visible global function
     definition for 'tkrreplot'
    explore : copytoclip: no visible global function definition for
     'tkrreplot'
    explore : outgraph.explore : savefic: no visible global function
     definition for 'postscript'
    explore : outgraph.explore : savefic: no visible global function
     definition for 'pdf'
    explore : outgraph.explore : savefic: no visible global function
     definition for 'pictex'
    explore : outgraph.explore : savefic: no visible global function
     definition for 'xfig'
    explore : outgraph.explore : savefic: no visible global function
     definition for 'png'
    explore : outgraph.explore : savefic: no visible global function
     definition for 'jpeg'
    explore : outgraph.explore : savefic: no visible global function
     definition for 'dev.off'
    explore: no visible global function definition for 'tkrplot'
    explore: no visible global function definition for 'density'
    newGr: no visible global function definition for 'x11'
    newGr: no visible global function definition for 'windows'
    ordiClust : fplot: no visible global function definition for 'rainbow'
    ordiClust : fplot: no visible global function definition for 'barplot'
    ordiClust : fplot: no visible global function definition for 'plot'
    ordiClust : fplot: no visible global function definition for 'abline'
    ordiClust : fplot: no visible global function definition for 'lines'
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for 'postscript'
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for 'pdf'
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for 'pictex'
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for 'xfig'
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for 'png'
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for 'jpeg'
    ordiClust : outgraphOrdiClust : savefic: no visible global function
     definition for 'dev.off'
    ordiClust: no visible global function definition for 'tkrplot'
    ordiClust : doClust: no visible global function definition for 'hclust'
    ordiClust : doClust: no visible global function definition for 'dist'
    ordiClust : doClust: no visible global function definition for 'cutree'
    ordiClust : doCutk: no visible global function definition for 'cutree'
    ordiClust : doCutk: no visible global function definition for 'between'
    ordiClust : doCutk: no visible global function definition for
     'randtest.between'
    ordiClust : doCuth: no visible global function definition for 'cutree'
    ordiClust : doCuth: no visible global function definition for 'between'
    ordiClust : doCuth: no visible global function definition for
     'randtest.between'
    ordiClust : doTest: no visible global function definition for 'cutree'
    ordiClust : doTest: no visible global function definition for 'between'
    ordiClust : doTest: no visible global function definition for
     'randtest.between'
    ordiClust : doDraw: no visible global function definition for 'cutree'
    ordiClust : doDraw: no visible global function definition for 'between'
    ordiClust : <anonymous>: no visible global function definition for
     'help'
    ordiClust : <anonymous>: no visible global function definition for
     'tkrreplot'
    ordiClust : f: no visible global function definition for 'cutree'
    ordiClust : f: no visible global function definition for 'between'
    ordiClust : f: no visible global function definition for
     'randtest.between'
    ordiClust : f: no visible global function definition for 'tkrreplot'
    ordiClust: no visible global function definition for 'tkrreplot'
    ordiClust : keyup: no visible global function definition for 'cutree'
    ordiClust : keyup: no visible global function definition for 'between'
    ordiClust : keyup: no visible global function definition for
     'randtest.between'
    ordiClust : keyup: no visible global function definition for
     'tkrreplot'
    ordiClust : keydown: no visible global function definition for 'cutree'
    ordiClust : keydown: no visible global function definition for
     'between'
    ordiClust : keydown: no visible global function definition for
     'randtest.between'
    ordiClust : keydown: no visible global function definition for
     'tkrreplot'
    ordiClust : kret: no visible global function definition for 'tkrreplot'
    outgraph : savefic: no visible global function definition for 'dev.cur'
    outgraph : savefic: no visible global function definition for
     'postscript'
    outgraph : savefic: no visible global function definition for 'pdf'
    outgraph : savefic: no visible global function definition for 'pictex'
    outgraph : savefic: no visible global function definition for 'xfig'
    outgraph : savefic: no visible global function definition for 'png'
    outgraph : savefic: no visible global function definition for 'jpeg'
    outgraph : savefic: no visible global function definition for 'dev.set'
    outgraph : savefic: no visible global function definition for
     'dev.copy'
    outgraph : savefic: no visible global function definition for 'dev.off'
    readtable : <anonymous>: no visible global function definition for
     'help'
    rewriteHistory: no visible global function definition for 'savehistory'
    rewriteHistory: no visible global function definition for 'loadhistory'
    selectGr: no visible global function definition for 'dev.list'
    selectGr: no visible global function definition for 'dev.cur'
    selectGr: no visible global function definition for 'dev.set'
    Undefined global functions or variables:
     abline barplot between box cutree data density dev.copy dev.cur
     dev.list dev.off dev.set dist dotchart hclust help help.start jpeg
     lines loadhistory par pdf pictex plot png polygon postscript rainbow
     randtest.between rect savehistory tkrplot tkrreplot windows x11 xfig
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2-6
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘newGr’
    Found the platform-specific devices:
     ‘quartz’ ‘windows’ ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    explore : plot.s.change.origin: no visible global function definition
     for ‘tkrreplot’
    explore : plot.s.change.origin.find: no visible global function
     definition for ‘tkrreplot’
    explore : plot.s.refresh: no visible global function definition for
     ‘tkrreplot’
    explore : redo.plot.s.zoomfac: no visible global function definition
     for ‘tkrreplot’
    explore : draw.rect: no visible global function definition for
     ‘tkrreplot’
    explore : addonelabel: no visible global function definition for
     ‘tkrreplot’
    explore : removelabel: no visible global function definition for
     ‘tkrreplot’
    explore : addalllabel: no visible global function definition for
     ‘tkrreplot’
    explore : addselectlabel : okbutton.f1.tt2: no visible global function
     definition for ‘tkrreplot’
    explore : labelbyvalues : ok.button.labval: no visible global function
     definition for ‘tkrreplot’
    explore : copytoclip: no visible global function definition for
     ‘tkrreplot’
    explore: no visible global function definition for ‘tkrplot’
    ordiClust: no visible global function definition for ‘tkrplot’
    ordiClust : doCutk: no visible global function definition for ‘between’
    ordiClust : doCutk: no visible global function definition for
     ‘randtest.between’
    ordiClust : doCuth: no visible global function definition for ‘between’
    ordiClust : doCuth: no visible global function definition for
     ‘randtest.between’
    ordiClust : doTest: no visible global function definition for ‘between’
    ordiClust : doTest: no visible global function definition for
     ‘randtest.between’
    ordiClust : doDraw: no visible global function definition for ‘between’
    ordiClust : <anonymous>: no visible global function definition for
     ‘tkrreplot’
    ordiClust : f: no visible global function definition for ‘between’
    ordiClust : f: no visible global function definition for
     ‘randtest.between’
    ordiClust : f: no visible global function definition for ‘tkrreplot’
    ordiClust: no visible global function definition for ‘tkrreplot’
    ordiClust : keyup: no visible global function definition for ‘between’
    ordiClust : keyup: no visible global function definition for
     ‘randtest.between’
    ordiClust : keyup: no visible global function definition for
     ‘tkrreplot’
    ordiClust : keydown: no visible global function definition for
     ‘between’
    ordiClust : keydown: no visible global function definition for
     ‘randtest.between’
    ordiClust : keydown: no visible global function definition for
     ‘tkrreplot’
    ordiClust : kret: no visible global function definition for ‘tkrreplot’
    
    Found the following assignments to the global environment:
    File ‘ade4TkGUI/R/ade4TkGUI.R’:
     assign("cmdlist", "cmdlist", envir = .GlobalEnv)
     assign("winlist", 1, envir = .GlobalEnv)
    File ‘ade4TkGUI/R/choose.R’:
     assign("winlist", get("winlist", envir = .GlobalEnv) + 1, envir = .GlobalEnv)
     assign("cmdlist", "cmdlist", envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.MCTests.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(randtestname), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.between.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.cca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.coinertia.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.discrimin.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dpcoa.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.acm.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.coa.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.dec.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.display.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.dudi.fca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.fpca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.mix.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.nsc.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.pca.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.dudi.pco.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/dialog.pcaiv.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.pcaivortho.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiout), myObject, pos = 1)
    File ‘ade4TkGUI/R/dialog.s.arrow.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.chull.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.class.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.label.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.match.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.s.value.R’:
     assign("cmdlist", c(get("cmdlist", envir = .GlobalEnv), cmd),
     envir = .GlobalEnv)
    File ‘ade4TkGUI/R/dialog.within.R’:
     assign("ade4TkGUIFlag", 1, envir = .GlobalEnv)
     assign(eval(dudiname), mydudi, pos = 1)
    File ‘ade4TkGUI/R/ordiClust.R’:
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.dudi", ordiClust.dudi, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
     assign("ordiClust.factor", ordiClust.factor, globalenv())
    
    Found the following calls to data() loading into the global environment:
    File ‘ade4TkGUI/R/choose.R’:
     data(list = choix)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2-6
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘newGr’
    Found the platform-specific devices:
     ‘quartz’ ‘windows’ ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    explore : plot.s.change.origin: no visible global function definition
     for ‘tkrreplot’
    explore : plot.s.change.origin.find: no visible global function
     definition for ‘tkrreplot’
    explore : plot.s.refresh: no visible global function definition for
     ‘tkrreplot’
    explore : redo.plot.s.zoomfac: no visible global function definition
     for ‘tkrreplot’
    explore : draw.rect: no visible global function definition for
     ‘tkrreplot’
    explore : addonelabel: no visible global function definition for
     ‘tkrreplot’
    explore : removelabel: no visible global function definition for
     ‘tkrreplot’
    explore : addalllabel: no visible global function definition for
     ‘tkrreplot’
    explore : addselectlabel : okbutton.f1.tt2: no visible global function
     definition for ‘tkrreplot’
    explore : labelbyvalues : ok.button.labval: no visible global function
     definition for ‘tkrreplot’
    explore : copytoclip: no visible global function definition for
     ‘tkrreplot’
    explore: no visible global function definition for ‘tkrplot’
    ordiClust: no visible global function definition for ‘tkrplot’
    ordiClust : doCutk: no visible global function definition for ‘between’
    ordiClust : doCutk: no visible global function definition for
     ‘randtest.between’
    ordiClust : doCuth: no visible global function definition for ‘between’
    ordiClust : doCuth: no visible global function definition for
     ‘randtest.between’
    ordiClust : doTest: no visible global function definition for ‘between’
    ordiClust : doTest: no visible global function definition for
     ‘randtest.between’
    ordiClust : doDraw: no visible global function definition for ‘between’
    ordiClust : <anonymous>: no visible global function definition for
     ‘tkrreplot’
    ordiClust : f: no visible global function definition for ‘between’
    ordiClust : f: no visible global function definition for
     ‘randtest.between’
    ordiClust : f: no visible global function definition for ‘tkrreplot’
    ordiClust: no visible global function definition for ‘tkrreplot’
    ordiClust : keyup: no visible global function definition for ‘between’
    ordiClust : keyup: no visible global function definition for
     ‘randtest.between’
    ordiClust : keyup: no visible global function definition for
     ‘tkrreplot’
    ordiClust : keydown: no visible global function definition for
     ‘between’
    ordiClust : keydown: no visible global function definition for
     ‘randtest.between’
    ordiClust : keydown: no visible global function definition for
     ‘tkrreplot’
    ordiClust : kret: no visible global function definition for ‘tkrreplot’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.2-6
Check: R code for possible problems
Result: NOTE
    explore : plot.s.change.origin: no visible global function definition
     for ‘tkrreplot’
    explore : plot.s.change.origin.find: no visible global function
     definition for ‘tkrreplot’
    explore : plot.s.refresh: no visible global function definition for
     ‘tkrreplot’
    explore : redo.plot.s.zoomfac: no visible global function definition
     for ‘tkrreplot’
    explore : draw.rect: no visible global function definition for
     ‘tkrreplot’
    explore : addonelabel: no visible global function definition for
     ‘tkrreplot’
    explore : removelabel: no visible global function definition for
     ‘tkrreplot’
    explore : addalllabel: no visible global function definition for
     ‘tkrreplot’
    explore : addselectlabel : okbutton.f1.tt2: no visible global function
     definition for ‘tkrreplot’
    explore : labelbyvalues : ok.button.labval: no visible global function
     definition for ‘tkrreplot’
    explore : copytoclip: no visible global function definition for
     ‘tkrreplot’
    explore: no visible global function definition for ‘tkrplot’
    ordiClust: no visible global function definition for ‘tkrplot’
    ordiClust : doCutk: no visible global function definition for ‘between’
    ordiClust : doCutk: no visible global function definition for
     ‘randtest.between’
    ordiClust : doCuth: no visible global function definition for ‘between’
    ordiClust : doCuth: no visible global function definition for
     ‘randtest.between’
    ordiClust : doTest: no visible global function definition for ‘between’
    ordiClust : doTest: no visible global function definition for
     ‘randtest.between’
    ordiClust : doDraw: no visible global function definition for ‘between’
    ordiClust : <anonymous>: no visible global function definition for
     ‘tkrreplot’
    ordiClust : f: no visible global function definition for ‘between’
    ordiClust : f: no visible global function definition for
     ‘randtest.between’
    ordiClust : f: no visible global function definition for ‘tkrreplot’
    ordiClust: no visible global function definition for ‘tkrreplot’
    ordiClust : keyup: no visible global function definition for ‘between’
    ordiClust : keyup: no visible global function definition for
     ‘randtest.between’
    ordiClust : keyup: no visible global function definition for
     ‘tkrreplot’
    ordiClust : keydown: no visible global function definition for
     ‘between’
    ordiClust : keydown: no visible global function definition for
     ‘randtest.between’
    ordiClust : keydown: no visible global function definition for
     ‘tkrreplot’
    ordiClust : kret: no visible global function definition for ‘tkrreplot’
Flavors: r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64