CRAN Package Check Results for Package adephylo

Last updated on 2015-08-29 20:47:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-6 7.64 84.74 92.38 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-6 8.18 83.60 91.78 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-6 189.02 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-6 182.25 NOTE
r-devel-osx-x86_64-clang 1.1-6 155.23 NOTE
r-devel-windows-ix86+x86_64 1.1-6 42.00 179.00 221.00 NOTE
r-patched-linux-x86_64 1.1-6 8.00 86.14 94.14 NOTE
r-patched-solaris-sparc 1.1-6 1027.50 NOTE
r-patched-solaris-x86 1.1-6 277.90 NOTE
r-release-linux-x86_64 1.1-6 8.12 86.28 94.40 NOTE
r-release-osx-x86_64-mavericks 1.1-6 NOTE
r-release-windows-ix86+x86_64 1.1-6 39.00 191.00 230.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-6 69.00 357.00 426.00 NOTE

Check Details

Version: 1.1-6
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1-6
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     dibas.dist dibas.matrix dibas.phylo dibas.vector plot.ppca print.ppca
     scatter.ppca screeplot.ppca summary.ppca
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1-6
Check: R code for possible problems
Result: NOTE
    bullseye: no visible global function definition for ‘par’
    bullseye: no visible global function definition for ‘symbols’
    bullseye: no visible global function definition for ‘segments’
    bullseye: no visible global function definition for ‘text’
    bullseye: no visible global function definition for ‘points’
    dibas.matrix : getproba.ind : <anonymous>: no visible global function
     definition for ‘dnorm’
    dibas.matrix : <anonymous>: no visible global function definition for
     ‘sd’
    dibas.matrix : <anonymous> : <anonymous>: no visible global function
     definition for ‘sd’
    dibas.vector : getproba.ind: no visible binding for global variable
     ‘sd’
    dibas.vector : getproba.ind : <anonymous>: no visible global function
     definition for ‘dnorm’
    orthogram: no visible global function definition for ‘par’
    orthogram: no visible global function definition for ‘layout’
    orthogram : fun: no visible global function definition for ‘segments’
    orthogram: no visible global function definition for ‘barplot’
    orthogram: no visible global function definition for ‘grey’
    orthogram: no visible global function definition for ‘abline’
    orthogram: no visible global function definition for ‘title’
    orthogram: no visible global function definition for ‘box’
    orthogram: no visible global function definition for ‘points’
    orthogram: no visible global function definition for ‘segments’
    orthogram: no visible global function definition for ‘arrows’
    plot.ppca: no visible global function definition for ‘par’
    plot.ppca: no visible global function definition for ‘layout’
    plot.ppca: no visible global function definition for ‘barplot’
    plot.ppca: no visible global function definition for ‘title’
    plot.ppca: no visible global function definition for ‘box’
    plot.ppca: no visible global function definition for ‘screeplot’
    plot.ppca: no visible global function definition for ‘dotchart’
    plot.ppca: no visible global function definition for ‘abline’
    plot.ppca: no visible global function definition for ‘median’
    plot.ppca: no visible global function definition for ‘rect’
    ppca: no visible global function definition for ‘barplot’
    screeplot.ppca: no visible global function definition for ‘par’
    screeplot.ppca: no visible global function definition for ‘text’
    screeplot.ppca: no visible global function definition for ‘axis’
    screeplot.ppca: no visible global function definition for ‘rect’
    screeplot.ppca: no visible global function definition for ‘segments’
    screeplot.ppca: no visible global function definition for ‘abline’
    screeplot.ppca: no visible global function definition for ‘title’
    simDatGroups: no visible global function definition for ‘rnorm’
    table.phylo4d: no visible global function definition for ‘heat.colors’
    table.phylo4d: no visible global function definition for ‘par’
    table.phylo4d: no visible global function definition for ‘strwidth’
    table.phylo4d: no visible global function definition for ‘segments’
    table.phylo4d : plotaux: no visible global function definition for
     ‘symbols’
    table.phylo4d : plotaux: no visible global function definition for
     ‘points’
    table.phylo4d: no visible global function definition for ‘text’
    table.phylo4d : addLegend: no visible global function definition for
     ‘strwidth’
    table.phylo4d : addLegend: no visible global function definition for
     ‘strheight’
    table.phylo4d : addLegend: no visible global function definition for
     ‘par’
    table.phylo4d : addLegend: no visible global function definition for
     ‘text’
    Undefined global functions or variables:
     abline arrows axis barplot box dnorm dotchart grey heat.colors layout
     median par points rect rnorm screeplot sd segments strheight strwidth
     symbols text title
    Consider adding
     importFrom("grDevices", "grey", "heat.colors")
     importFrom("graphics", "abline", "arrows", "axis", "barplot", "box",
     "dotchart", "layout", "par", "points", "rect", "segments",
     "strheight", "strwidth", "symbols", "text", "title")
     importFrom("stats", "dnorm", "median", "rnorm", "screeplot", "sd")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-6
Check: compiled code
Result: NOTE
    File ‘adephylo/libs/adephylo.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘adesub.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘adesub.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1-6
Check: compiled code
Result: NOTE
    File ‘adephylo/libs/adephylo.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Object: ‘adesub.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘adesub.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 1.1-6
Check: compiled code
Result: NOTE
    File 'adephylo/libs/i386/adephylo.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'adesub.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'adesub.o'
    File 'adephylo/libs/x64/adephylo.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'adesub.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'adesub.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64