CRAN Package Check Results for Package adephylo

Last updated on 2015-07-06 21:46:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-6 3.66 43.50 47.15 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-6 4.04 42.30 46.34 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-6 98.17 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-6 96.10 NOTE
r-devel-osx-x86_64-clang 1.1-6 84.37 NOTE
r-devel-windows-ix86+x86_64 1.1-6 30.00 87.00 117.00 NOTE
r-patched-linux-x86_64 1.1-6 4.16 42.53 46.69 NOTE
r-patched-solaris-sparc 1.1-6 590.80 NOTE
r-patched-solaris-x86 1.1-6 133.90 NOTE
r-release-linux-x86_64 1.1-6 4.03 42.96 46.98 NOTE
r-release-osx-x86_64-mavericks 1.1-6 NOTE
r-release-windows-ix86+x86_64 1.1-6 24.00 95.00 119.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-6 27.00 167.00 194.00 NOTE

Check Details

Version: 1.1-6
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1-6
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     dibas.dist dibas.matrix dibas.phylo dibas.vector plot.ppca print.ppca
     scatter.ppca screeplot.ppca summary.ppca
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1-6
Check: R code for possible problems
Result: NOTE
    bullseye: no visible global function definition for ‘par’
    bullseye: no visible global function definition for ‘symbols’
    bullseye: no visible global function definition for ‘segments’
    bullseye: no visible global function definition for ‘text’
    bullseye: no visible global function definition for ‘points’
    dibas.matrix : getproba.ind : <anonymous>: no visible global function
     definition for ‘dnorm’
    dibas.matrix : <anonymous>: no visible global function definition for
     ‘sd’
    dibas.matrix : <anonymous> : <anonymous>: no visible global function
     definition for ‘sd’
    dibas.vector : getproba.ind: no visible binding for global variable
     ‘sd’
    dibas.vector : getproba.ind : <anonymous>: no visible global function
     definition for ‘dnorm’
    orthogram: no visible global function definition for ‘par’
    orthogram: no visible global function definition for ‘layout’
    orthogram : fun: no visible global function definition for ‘segments’
    orthogram: no visible global function definition for ‘barplot’
    orthogram: no visible global function definition for ‘grey’
    orthogram: no visible global function definition for ‘abline’
    orthogram: no visible global function definition for ‘title’
    orthogram: no visible global function definition for ‘box’
    orthogram: no visible global function definition for ‘points’
    orthogram: no visible global function definition for ‘segments’
    orthogram: no visible global function definition for ‘arrows’
    plot.ppca: no visible global function definition for ‘par’
    plot.ppca: no visible global function definition for ‘layout’
    plot.ppca: no visible global function definition for ‘barplot’
    plot.ppca: no visible global function definition for ‘title’
    plot.ppca: no visible global function definition for ‘box’
    plot.ppca: no visible global function definition for ‘screeplot’
    plot.ppca: no visible global function definition for ‘dotchart’
    plot.ppca: no visible global function definition for ‘abline’
    plot.ppca: no visible global function definition for ‘median’
    plot.ppca: no visible global function definition for ‘rect’
    ppca: no visible global function definition for ‘barplot’
    screeplot.ppca: no visible global function definition for ‘par’
    screeplot.ppca: no visible global function definition for ‘text’
    screeplot.ppca: no visible global function definition for ‘axis’
    screeplot.ppca: no visible global function definition for ‘rect’
    screeplot.ppca: no visible global function definition for ‘segments’
    screeplot.ppca: no visible global function definition for ‘abline’
    screeplot.ppca: no visible global function definition for ‘title’
    simDatGroups: no visible global function definition for ‘rnorm’
    table.phylo4d: no visible global function definition for ‘heat.colors’
    table.phylo4d: no visible global function definition for ‘par’
    table.phylo4d: no visible global function definition for ‘strwidth’
    table.phylo4d: no visible global function definition for ‘segments’
    table.phylo4d : plotaux: no visible global function definition for
     ‘symbols’
    table.phylo4d : plotaux: no visible global function definition for
     ‘points’
    table.phylo4d: no visible global function definition for ‘text’
    table.phylo4d : addLegend: no visible global function definition for
     ‘strwidth’
    table.phylo4d : addLegend: no visible global function definition for
     ‘strheight’
    table.phylo4d : addLegend: no visible global function definition for
     ‘par’
    table.phylo4d : addLegend: no visible global function definition for
     ‘text’
    Undefined global functions or variables:
     abline arrows axis barplot box dnorm dotchart grey heat.colors layout
     median par points rect rnorm screeplot sd segments strheight strwidth
     symbols text title
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-6
Check: compiled code
Result: NOTE
    File ‘adephylo/libs/adephylo.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘adesub.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘adesub.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1-6
Check: compiled code
Result: NOTE
    File ‘adephylo/libs/adephylo.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Object: ‘adesub.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘adesub.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 1.1-6
Check: compiled code
Result: NOTE
    File 'adephylo/libs/i386/adephylo.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'adesub.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'adesub.o'
    File 'adephylo/libs/x64/adephylo.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'adesub.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'adesub.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64