CRAN Package Check Results for Package agridat

Last updated on 2014-10-21 01:47:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.9 6.32 107.43 113.75 NOTE
r-devel-linux-x86_64-debian-gcc 1.9 6.38 108.28 114.66 NOTE
r-devel-linux-x86_64-fedora-clang 1.9 246.17 NOTE
r-devel-linux-x86_64-fedora-gcc 1.9 243.56 NOTE
r-devel-osx-x86_64-clang 1.9 214.58 NOTE
r-devel-windows-ix86+x86_64 1.9 18.00 146.00 164.00 NOTE
r-patched-linux-x86_64 1.9 6.28 124.82 131.10 NOTE
r-patched-solaris-sparc 1.9 1358.60 NOTE
r-patched-solaris-x86 1.9 320.40 NOTE
r-release-linux-ix86 1.9 8.16 58.34 66.50 ERROR
r-release-linux-x86_64 1.9 6.61 129.93 136.54 OK
r-release-osx-x86_64-mavericks 1.9 ERROR
r-release-osx-x86_64-snowleopard 1.9 OK
r-release-windows-ix86+x86_64 1.9 17.00 183.00 200.00 NOTE
r-oldrel-windows-ix86+x86_64 1.9 21.00 176.00 197.00 NOTE

Check Details

Version: 1.9
Check: R code for possible problems
Result: NOTE
    gge.matrix: no visible global function definition for ‘pca’
    gge.matrix: no visible global function definition for ‘prep’
    vc.glmerMod: no visible global function definition for ‘VarCorr’
    vc.lmerMod: no visible global function definition for ‘VarCorr’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks

Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with 'browseVignettes()'. To
     cite Bioconductor, see 'citation("Biobase")', and for packages
     'citation("pkgname")'.
    
    Loading required package: Rcpp
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'agridat.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `inconsolata.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.9
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘HH’
Flavor: r-release-linux-ix86

Version: 1.9
Check: examples
Result: ERROR
    Running examples in ‘agridat-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cox.stripsplit
    > ### Title: Strip-split plot of barley with fertilizer, calcium, and soil
    > ### factors.
    > ### Aliases: cox.stripsplit
    >
    > ### ** Examples
    >
    > dat <- cox.stripsplit
    >
    > # Raw means
    > aggregate(yield ~ calcium, data=dat, mean)
     calcium yield
    1 C0 5.481042
    2 C1 5.373542
    > aggregate(yield ~ soil, data=dat, mean)
     soil yield
    1 S1 5.543125
    2 S2 5.510937
    3 S3 5.227812
    > aggregate(yield ~ calcium, data=dat, mean)
     calcium yield
    1 C0 5.481042
    2 C1 5.373542
    >
    > require(HH)
    Loading required package: HH
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘HH’
    > interaction2wt(yield ~ rep + soil + fert + calcium, dat,
    + main="cox.stripsplit")
    Error: could not find function "interaction2wt"
    Execution halted
Flavor: r-release-linux-ix86

Version: 1.9
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gstat’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.9
Check: examples
Result: ERROR
    Running examples in ‘agridat-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: waynick.soil
    > ### Title: Soil nitrogen and carbon in two fields
    > ### Aliases: waynick.soil
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > dat <- waynick.soil
    >
    > # Strong relationship between N,C
    > require(lattice)
    > xyplot(nitro~carbon|field, data=dat, main="waynick.soil")
    >
    > # Spatial plot
    > require(sp)
    Loading required package: sp
    > require(gstat)
    Loading required package: gstat
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘gstat’
    > d1 <- subset(dat, field=="Davis")
    > d2 <- subset(dat, field=="Oakley")
    > coordinates(d1) <- data.frame(x=d1$x, y=d1$y)
    > coordinates(d2) <- data.frame(x=d2$x, y=d2$y)
    > spplot(d1, zcol = "nitro", cuts=8, cex = 1.6,
    + main = "waynick.soil - Davis field - nitrogen",
    + col.regions = bpy.colors(8), key.space = "right")
    >
    > # Variogram
    > v1 <- variogram(nitro~1, data=d1)
    Error: could not find function "variogram"
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with 'browseVignettes()'. To
     cite Bioconductor, see 'citation("Biobase")', and for packages
     'citation("pkgname")'.
    
    Loading required package: Rcpp
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" --max-iterations=20 -I "D:/RCompile/recent/R-3.1.1/share/texmf/tex/latex" -I "D:/RCompile/recent/R-3.1.1/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'agridat.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `inconsolata.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with 'browseVignettes()'. To
     cite Bioconductor, see 'citation("Biobase")', and for packages
     'citation("pkgname")'.
    
    Loading required package: Rcpp
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" -I "D:/Rcompile/recent/R-3.0.3/share/texmf/tex/latex" -I "D:/Rcompile/recent/R-3.0.3/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'agridat.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `inconsolata.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64