CRAN Package Check Results for Package animation

Last updated on 2014-07-24 22:48:33.

Check Details

Version: 2.2
Check: dependencies in R code
Result: NOTE
    Unexported object imported by a ':::' call: ‘MASS:::predict.lda’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘readme.md’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.2
Check: Rd line widths
Result: NOTE
    Rd file 'BM.circle.Rd':
     \examples lines wider than 100 characters:
     single.opts = "'controls': ['first', 'previous', 'play', 'next', 'last', 'loop', 'speed'], 'delayMin': 0",
    
    Rd file 'MC.hitormiss.Rd':
     \examples lines wider than 100 characters:
     }, img.name = "MC.hitormiss", htmlfile = "MC.hitormiss.html", title = "Hit or Miss Monte Carlo Integration",
    
    Rd file 'MC.samplemean.Rd':
     \examples lines wider than 100 characters:
     }, img.name = "MC.samplemean", htmlfile = "MC.samplemean.html", title = "Sample Mean Monte Carlo Integration",
    
    Rd file 'Rosling.bubbles.Rd':
     \usage lines wider than 90 characters:
     xlab = "x", ylab = "y", ..., grid = TRUE, text = 1:ani.options("nmax"), text.col = rgb(0,
     \examples lines wider than 100 characters:
     ani.width = 600, title = "The Bubbles Animation in Hans Rosling's Talk", description = c("An imitation of Hans Rosling's moving bub ... [TRUNCATED]
    
    Rd file 'animation-package.Rd':
     \examples lines wider than 100 characters:
     brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
     }, img.name = "bm_plot", title = "Demonstration of Brownian Motion", description = c("Random walk on the 2D plane: for each point",
    
    Rd file 'bisection.method.Rd':
     \usage lines wider than 90 characters:
     bisection.method(FUN = function(x) x^2 - 4, rg = c(-1, 10), tol = 0.001, interact = FALSE,
     \examples lines wider than 100 characters:
     description = c("The bisection method is a root-finding algorithm", "which works by repeatedly dividing an interval in half and the ... [TRUNCATED]
    
    Rd file 'boot.iid.Rd':
     \usage lines wider than 90 characters:
     boot.iid(x = runif(20), statistic = mean, m = length(x), mat = matrix(1:2, 2), widths = rep(1,
     \examples lines wider than 100 characters:
     title = "Bootstrapping the i.i.d data", description = c("This is a naive version of bootstrapping but",
    
    Rd file 'boot.lowess.Rd':
     \examples lines wider than 100 characters:
     }, img.name = "boot_lowess", imgdir = "boot_lowess", interval = 0.1, title = "Bootstrapping with LOWESS",
    
    Rd file 'brownian.motion.Rd':
     \examples lines wider than 100 characters:
     brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
     }, single.opts = "'controls': ['first', 'previous', 'play', 'next', 'last', 'loop', 'speed'], 'delayMin': 0",
     title = "Demonstration of Brownian Motion", description = c("Random walk on the 2D plane: for each point",
    
    Rd file 'buffon.needle.Rd':
     \usage lines wider than 90 characters:
     buffon.needle(l = 0.8, d = 1, redraw = TRUE, mat = matrix(c(1, 3, 2, 3), 2), heights = c(3,
     \examples lines wider than 100 characters:
     ani.width = 600, title = "Simulation of Buffon's Needle", description = c("There are three graphs made in each step: the",
     "top-left, one is a simulation of the scenario, the top-right one", "is to help us understand the connection between dropping n ... [TRUNCATED]
     "and the mathematical method to estimate pi, and the bottom one is", "the result for each dropping."))
    
    Rd file 'clt.ani.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the Central Limit Theorem", description = c("This animation shows the distribution of the sample",
    
    Rd file 'conf.int.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of Confidence Intervals", description = c("This animation shows the concept of the confidence",
     "interval which depends on the observations: if the samples change,", "the interval changes too. At last we can see that the co ... [TRUNCATED]
    
    Rd file 'convert.Rd':
     \examples lines wider than 100 characters:
     brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
    
    Rd file 'cv.ani.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the k-fold Cross Validation", description = c("This is a naive demonstration for the k-fold cross",
     "validation. The k rectangles in the plot denote the k folds of data.", "Each time a fold will be used as the test set and the ... [TRUNCATED]
    
    Rd file 'cv.nfeaturesLDA.Rd':
     \examples lines wider than 100 characters:
     "out the optimum number of variables using k-fold cross-validation", "in a linear discriminant analysis (LDA)."))
    
    Rd file 'flip.coin.Rd':
     \usage lines wider than 90 characters:
     flip.coin(faces = 2, prob = NULL, border = "white", grid = "white", col = 1:2, type = "p",
     \examples lines wider than 100 characters:
     title = "Probability in flipping coins", description = c("This animation has provided a simulation of flipping coins",
    
    Rd file 'g.brownian.motion.Rd':
     \usage lines wider than 90 characters:
     g.brownian.motion(p = 20, start = 1900, digits = 14, file = file.path(ani.options("outdir"),
    
    Rd file 'grad.desc.Rd':
     \usage lines wider than 90 characters:
     3), gamma = 0.05, tol = 0.001, gr = NULL, len = 50, interact = FALSE, col.contour = "red",
     \examples lines wider than 100 characters:
     title = "Demonstration of the Gradient Descent Algorithm", description = "The arrows will take you to the optimum step by step.")
    
    Rd file 'kmeans.ani.Rd':
     \usage lines wider than 90 characters:
     kmeans.ani(x = cbind(X1 = runif(50), X2 = runif(50)), centers = 3, hints = c("Move centers!",
     \examples lines wider than 100 characters:
     title = "Demonstration of the K-means Cluster Algorithm", description = "Move! Average! Cluster! Move! Average! Cluster! ...")
    
    Rd file 'knn.ani.Rd':
     \usage lines wider than 90 characters:
     knn.ani(train, test, cl, k = 10, interact = FALSE, tt.col = c("blue", "red"), cl.pch = seq_along(unique(cl)),
     \examples lines wider than 100 characters:
     "the k nearest (in Euclidean", "distance) training set vectors are found, and the classification is",
    
    Rd file 'least.squares.Rd':
     \examples lines wider than 100 characters:
     ani.width = 600, title = "Demonstration of Least Squares", description = c("We want to find an estimate for the slope",
    
    Rd file 'lln.ani.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the Law of Large Numbers", description = c("The sample mean approaches to the population mean as",
    
    Rd file 'moving.block.Rd':
     \examples lines wider than 100 characters:
     plot(..., x = i + 1:block, xlab = "paragraph index", ylim = range(dat), ylab = sprintf("HuSpeech[%s:%s]",
     plot(..., xlab = sprintf("%s[%s:%s]", colnames(dat)[1], i + 1, i + block), ylab = sprintf("%s[%s:%s]",
    
    Rd file 'mwar.ani.Rd':
     \usage lines wider than 90 characters:
     mwar.ani(x, k = 15, conf = 2, mat = matrix(1:2, 2), widths = rep(1, ncol(mat)), heights = rep(1,
     \examples lines wider than 100 characters:
     title = "Demonstration of Moving Window Auto-Regression", description = c("Compute the AR(1) coefficient for the data in the",
    
    Rd file 'newton.method.Rd':
     \examples lines wider than 100 characters:
     ani.width = 600, title = "Demonstration of the Newton-Raphson Method", description = "Go along with the tangent lines and iterate." ... [TRUNCATED]
    
    Rd file 'quincunx.Rd':
     \usage lines wider than 90 characters:
     quincunx(balls = 200, layers = 15, pch.layers = 2, pch.balls = 19, col.balls = sample(colors(),
     \examples lines wider than 100 characters:
     single.opts = "'controls': ['first', 'previous', 'play', 'next', 'last', 'loop', 'speed'], 'delayMin': 0",
     title = "Demonstration of the Galton Box", description = c("Balls", "falling through pins will show you the Normal",
    
    Rd file 'sample.ratio.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the Ratio Estimation", description = c("Estimate the mean of Y, making use of the ratio",
    
    Rd file 'sample.simple.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the simple random sampling without replacement", description = c("Each member of the population has an eq ... [TRUNCATED]
    
    Rd file 'sample.strat.Rd':
     \usage lines wider than 90 characters:
     sample.strat(pop = ceiling(10 * runif(10, 0.5, 1)), size = ceiling(pop * runif(length(pop),
     \examples lines wider than 100 characters:
     title = "Demonstration of the stratified sampling", description = c("Every rectangle stands for a stratum, and the simple",
    
    Rd file 'sample.system.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the systematic sampling", description = "Sampling with equal distances.")
    
    Rd file 'saveHTML.Rd':
     \examples lines wider than 100 characters:
     title = "Demo of 50 Normal random numbers", description = c("When you write a long long long long description,",
     }, img.name = "brownian_motion_a", htmlfile = "index.html", description = c("Random walk of 10 points on the 2D plane:",
     }, img.name = "brownian_motion_b", htmlfile = "index.html", single.opts = "'controls': ['first', 'previous', 'play', 'next', 'last', 'l ... [TRUNCATED]
    
    Rd file 'saveLatex.Rd':
     \usage lines wider than 90 characters:
     label = NULL, pkg.opts = NULL, documentclass = "article", latex.filename = "animation.tex",
     \examples lines wider than 100 characters:
     brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
     documentclass = paste("\\\\documentclass{article}", "\\\\usepackage[papersize={7in,7in},margin=0.3in]{geometry}",
    
    Rd file 'sim.qqnorm.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of Simulated QQ Plots", description = c("This animation shows the QQ plots of random numbers",
    
    Rd file 'vi.lilac.chaser.Rd':
     \examples lines wider than 100 characters:
     ani.width = 480, title = "Visual Illusions: Lilac Chaser", description = c("Stare at the center cross for a few (say 30) seconds",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc