CRAN Package Check Results for Package animation

Last updated on 2014-04-19 08:50:09.

Check Details

Version: 2.2
Check: dependencies in R code
Result: NOTE
    Unexported object imported by a ':::' call: ‘MASS:::predict.lda’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘readme.md’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.2
Check: Rd line widths
Result: NOTE
    Rd file 'BM.circle.Rd':
     \examples lines wider than 100 characters:
     single.opts = "'controls': ['first', 'previous', 'play', 'next', 'last', 'loop', 'speed'], 'delayMin': 0",
    
    Rd file 'MC.hitormiss.Rd':
     \examples lines wider than 100 characters:
     }, img.name = "MC.hitormiss", htmlfile = "MC.hitormiss.html", title = "Hit or Miss Monte Carlo Integration",
    
    Rd file 'MC.samplemean.Rd':
     \examples lines wider than 100 characters:
     }, img.name = "MC.samplemean", htmlfile = "MC.samplemean.html", title = "Sample Mean Monte Carlo Integration",
    
    Rd file 'Rosling.bubbles.Rd':
     \usage lines wider than 90 characters:
     xlab = "x", ylab = "y", ..., grid = TRUE, text = 1:ani.options("nmax"), text.col = rgb(0,
     \examples lines wider than 100 characters:
     ani.width = 600, title = "The Bubbles Animation in Hans Rosling's Talk", description = c("An imitation of Hans Rosling's moving bub ... [TRUNCATED]
    
    Rd file 'animation-package.Rd':
     \examples lines wider than 100 characters:
     brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
     }, img.name = "bm_plot", title = "Demonstration of Brownian Motion", description = c("Random walk on the 2D plane: for each point",
    
    Rd file 'bisection.method.Rd':
     \usage lines wider than 90 characters:
     bisection.method(FUN = function(x) x^2 - 4, rg = c(-1, 10), tol = 0.001, interact = FALSE,
     \examples lines wider than 100 characters:
     description = c("The bisection method is a root-finding algorithm", "which works by repeatedly dividing an interval in half and the ... [TRUNCATED]
    
    Rd file 'boot.iid.Rd':
     \usage lines wider than 90 characters:
     boot.iid(x = runif(20), statistic = mean, m = length(x), mat = matrix(1:2, 2), widths = rep(1,
     \examples lines wider than 100 characters:
     title = "Bootstrapping the i.i.d data", description = c("This is a naive version of bootstrapping but",
    
    Rd file 'boot.lowess.Rd':
     \examples lines wider than 100 characters:
     }, img.name = "boot_lowess", imgdir = "boot_lowess", interval = 0.1, title = "Bootstrapping with LOWESS",
    
    Rd file 'brownian.motion.Rd':
     \examples lines wider than 100 characters:
     brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
     }, single.opts = "'controls': ['first', 'previous', 'play', 'next', 'last', 'loop', 'speed'], 'delayMin': 0",
     title = "Demonstration of Brownian Motion", description = c("Random walk on the 2D plane: for each point",
    
    Rd file 'buffon.needle.Rd':
     \usage lines wider than 90 characters:
     buffon.needle(l = 0.8, d = 1, redraw = TRUE, mat = matrix(c(1, 3, 2, 3), 2), heights = c(3,
     \examples lines wider than 100 characters:
     ani.width = 600, title = "Simulation of Buffon's Needle", description = c("There are three graphs made in each step: the",
     "top-left, one is a simulation of the scenario, the top-right one", "is to help us understand the connection between dropping n ... [TRUNCATED]
     "and the mathematical method to estimate pi, and the bottom one is", "the result for each dropping."))
    
    Rd file 'clt.ani.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the Central Limit Theorem", description = c("This animation shows the distribution of the sample",
    
    Rd file 'conf.int.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of Confidence Intervals", description = c("This animation shows the concept of the confidence",
     "interval which depends on the observations: if the samples change,", "the interval changes too. At last we can see that the co ... [TRUNCATED]
    
    Rd file 'convert.Rd':
     \examples lines wider than 100 characters:
     brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
    
    Rd file 'cv.ani.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the k-fold Cross Validation", description = c("This is a naive demonstration for the k-fold cross",
     "validation. The k rectangles in the plot denote the k folds of data.", "Each time a fold will be used as the test set and the ... [TRUNCATED]
    
    Rd file 'cv.nfeaturesLDA.Rd':
     \examples lines wider than 100 characters:
     "out the optimum number of variables using k-fold cross-validation", "in a linear discriminant analysis (LDA)."))
    
    Rd file 'flip.coin.Rd':
     \usage lines wider than 90 characters:
     flip.coin(faces = 2, prob = NULL, border = "white", grid = "white", col = 1:2, type = "p",
     \examples lines wider than 100 characters:
     title = "Probability in flipping coins", description = c("This animation has provided a simulation of flipping coins",
    
    Rd file 'g.brownian.motion.Rd':
     \usage lines wider than 90 characters:
     g.brownian.motion(p = 20, start = 1900, digits = 14, file = file.path(ani.options("outdir"),
    
    Rd file 'grad.desc.Rd':
     \usage lines wider than 90 characters:
     3), gamma = 0.05, tol = 0.001, gr = NULL, len = 50, interact = FALSE, col.contour = "red",
     \examples lines wider than 100 characters:
     title = "Demonstration of the Gradient Descent Algorithm", description = "The arrows will take you to the optimum step by step.")
    
    Rd file 'kmeans.ani.Rd':
     \usage lines wider than 90 characters:
     kmeans.ani(x = cbind(X1 = runif(50), X2 = runif(50)), centers = 3, hints = c("Move centers!",
     \examples lines wider than 100 characters:
     title = "Demonstration of the K-means Cluster Algorithm", description = "Move! Average! Cluster! Move! Average! Cluster! ...")
    
    Rd file 'knn.ani.Rd':
     \usage lines wider than 90 characters:
     knn.ani(train, test, cl, k = 10, interact = FALSE, tt.col = c("blue", "red"), cl.pch = seq_along(unique(cl)),
     \examples lines wider than 100 characters:
     "the k nearest (in Euclidean", "distance) training set vectors are found, and the classification is",
    
    Rd file 'least.squares.Rd':
     \examples lines wider than 100 characters:
     ani.width = 600, title = "Demonstration of Least Squares", description = c("We want to find an estimate for the slope",
    
    Rd file 'lln.ani.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the Law of Large Numbers", description = c("The sample mean approaches to the population mean as",
    
    Rd file 'moving.block.Rd':
     \examples lines wider than 100 characters:
     plot(..., x = i + 1:block, xlab = "paragraph index", ylim = range(dat), ylab = sprintf("HuSpeech[%s:%s]",
     plot(..., xlab = sprintf("%s[%s:%s]", colnames(dat)[1], i + 1, i + block), ylab = sprintf("%s[%s:%s]",
    
    Rd file 'mwar.ani.Rd':
     \usage lines wider than 90 characters:
     mwar.ani(x, k = 15, conf = 2, mat = matrix(1:2, 2), widths = rep(1, ncol(mat)), heights = rep(1,
     \examples lines wider than 100 characters:
     title = "Demonstration of Moving Window Auto-Regression", description = c("Compute the AR(1) coefficient for the data in the",
    
    Rd file 'newton.method.Rd':
     \examples lines wider than 100 characters:
     ani.width = 600, title = "Demonstration of the Newton-Raphson Method", description = "Go along with the tangent lines and iterate." ... [TRUNCATED]
    
    Rd file 'quincunx.Rd':
     \usage lines wider than 90 characters:
     quincunx(balls = 200, layers = 15, pch.layers = 2, pch.balls = 19, col.balls = sample(colors(),
     \examples lines wider than 100 characters:
     single.opts = "'controls': ['first', 'previous', 'play', 'next', 'last', 'loop', 'speed'], 'delayMin': 0",
     title = "Demonstration of the Galton Box", description = c("Balls", "falling through pins will show you the Normal",
    
    Rd file 'sample.ratio.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the Ratio Estimation", description = c("Estimate the mean of Y, making use of the ratio",
    
    Rd file 'sample.simple.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the simple random sampling without replacement", description = c("Each member of the population has an eq ... [TRUNCATED]
    
    Rd file 'sample.strat.Rd':
     \usage lines wider than 90 characters:
     sample.strat(pop = ceiling(10 * runif(10, 0.5, 1)), size = ceiling(pop * runif(length(pop),
     \examples lines wider than 100 characters:
     title = "Demonstration of the stratified sampling", description = c("Every rectangle stands for a stratum, and the simple",
    
    Rd file 'sample.system.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of the systematic sampling", description = "Sampling with equal distances.")
    
    Rd file 'saveHTML.Rd':
     \examples lines wider than 100 characters:
     title = "Demo of 50 Normal random numbers", description = c("When you write a long long long long description,",
     }, img.name = "brownian_motion_a", htmlfile = "index.html", description = c("Random walk of 10 points on the 2D plane:",
     }, img.name = "brownian_motion_b", htmlfile = "index.html", single.opts = "'controls': ['first', 'previous', 'play', 'next', 'last', 'l ... [TRUNCATED]
    
    Rd file 'saveLatex.Rd':
     \usage lines wider than 90 characters:
     label = NULL, pkg.opts = NULL, documentclass = "article", latex.filename = "animation.tex",
     \examples lines wider than 100 characters:
     brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
     documentclass = paste("\\\\documentclass{article}", "\\\\usepackage[papersize={7in,7in},margin=0.3in]{geometry}",
    
    Rd file 'sim.qqnorm.Rd':
     \examples lines wider than 100 characters:
     title = "Demonstration of Simulated QQ Plots", description = c("This animation shows the QQ plots of random numbers",
    
    Rd file 'vi.lilac.chaser.Rd':
     \examples lines wider than 100 characters:
     ani.width = 480, title = "Visual Illusions: Lilac Chaser", description = c("Stare at the center cross for a few (say 30) seconds",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.2
Check: examples
Result: ERROR
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    >
    > ani.options(oopt)
    >
    >
    >
    > graphics::par(get("par.postscript", pos = 'CheckExEnv'))
    > cleanEx()
    > nameEx("convert")
    > ### * convert
    >
    > flush(stderr()); flush(stdout())
    >
    > ### Name: im.convert
    > ### Title: A wrapper for the 'convert' utility of ImageMagick or
    > ### GraphicsMagick
    > ### Aliases: gm.convert im.convert
    >
    > ### ** Examples
    >
    > ## generate some images
    > owd = setwd(tempdir())
    > oopt = ani.options(interval = 0.05, nmax = 20)
    > png("bm%03d.png")
    > brownian.motion(pch = 21, cex = 5, col = "red", bg = "yellow", main = "Demonstration of Brownian Motion")
    > dev.off()
    pdf
     2
    >
    > ## filenames with a wildcard *
    > im.convert("bm*.png", output = "bm-animation1.gif")
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-ix86+x86_64