CRAN Package Check Results for Package apTreeshape

Last updated on 2017-10-19 06:46:51.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4-5 2.94 73.14 76.07 NOTE
r-devel-linux-x86_64-debian-gcc 1.4-5 3.41 72.90 76.31 NOTE
r-devel-linux-x86_64-fedora-clang 1.4-5 156.74 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4-5 160.02 NOTE
r-devel-windows-ix86+x86_64 1.4-5 7.00 119.00 126.00 NOTE
r-patched-linux-x86_64 1.4-5 3.01 71.07 74.08 NOTE
r-patched-solaris-x86 1.4-5 188.80 NOTE
r-release-linux-x86_64 1.4-5 3.05 71.60 74.65 NOTE
r-release-windows-ix86+x86_64 1.4-5 13.00 180.00 193.00 NOTE
r-release-osx-x86_64 1.4-5 NOTE
r-oldrel-windows-ix86+x86_64 1.4-5 10.00 166.00 176.00 NOTE
r-oldrel-osx-x86_64 1.4-5 NOTE

Check Details

Version: 1.4-5
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     all.equal.treeshape all.equal.treeshape as.phylo.treeshape
     as.treeshape.phylo as.treeshape.treebalance is.binary.phylo
     plot.treeshape summary.treeshape
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.4-5
Check: R code for possible problems
Result: NOTE
    aldous.test: no visible global function definition for ‘plot’
    aldous.test: no visible global function definition for ‘text’
    aldous.test: no visible global function definition for ‘coefficients’
    aldous.test: no visible global function definition for ‘abline’
    colless.test : colless3: no visible global function definition for
     ‘dbinom’
    colless.test: no visible global function definition for ‘ecdf’
    likelihood.test: no visible global function definition for ‘pnorm’
    maxlik.betasplit : optim_lik_aldous: no visible global function
     definition for ‘optimize’
    maxlik.betasplit : optim_lik_aldous_bal: no visible global function
     definition for ‘optimize’
    maxlik.betasplit: no visible global function definition for ‘quantile’
    maxlik.betasplit: no visible global function definition for ‘uniroot’
    plot.treeshape : plotone: no visible global function definition for
     ‘hclust’
    plot.treeshape : plotone: no visible global function definition for
     ‘dist’
    plot.treeshape : plotone: no visible global function definition for
     ‘runif’
    plot.treeshape : plotone: no visible global function definition for
     ‘as.dendrogram’
    plot.treeshape : plotone: no visible global function definition for
     ‘par’
    plot.treeshape : plotone: no visible global function definition for
     ‘plot’
    plot.treeshape: no visible global function definition for ‘layout’
    rpda: no visible global function definition for ‘runif’
    sackin.test : sackin3: no visible global function definition for
     ‘dbinom’
    sackin.test: no visible global function definition for ‘ecdf’
    subtree.test: no visible global function definition for ‘pnorm’
    Undefined global functions or variables:
     abline as.dendrogram coefficients dbinom dist ecdf hclust layout
     optimize par plot pnorm quantile runif text uniroot
    Consider adding
     importFrom("graphics", "abline", "layout", "par", "plot", "text")
     importFrom("stats", "as.dendrogram", "coefficients", "dbinom", "dist",
     "ecdf", "hclust", "optimize", "pnorm", "quantile", "runif",
     "uniroot")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.4-5
Check: Rd line widths
Result: NOTE
    Rd file 'shift.test.Rd':
     \examples lines wider than 100 characters:
     pv <- sapply(1:135, FUN = function(i) shift.test(tree.birds, i, lambda1 = 1, lambda2 = 100, nrep = 1000, silent = TRUE))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64