CRAN Package Check Results for Package aroma.affymetrix

Last updated on 2014-04-24 09:48:56.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.12.0 10.66 166.76 177.43 NOTE
r-devel-linux-x86_64-debian-gcc 2.12.0 10.68 167.33 178.01 NOTE
r-devel-linux-x86_64-fedora-clang 2.12.0 364.60 NOTE
r-devel-linux-x86_64-fedora-gcc 2.12.0 350.11 NOTE
r-devel-osx-x86_64-clang 2.12.0 264.42 NOTE
r-devel-osx-x86_64-gcc 2.12.0 ERROR
r-devel-windows-ix86+x86_64 2.12.0 26.00 194.00 220.00 NOTE
r-patched-linux-x86_64 2.12.0 10.39 171.96 182.35 NOTE
r-patched-solaris-sparc 2.12.0 1922.30 NOTE
r-patched-solaris-x86 2.12.0 393.00 NOTE
r-release-linux-ix86 2.12.0 16.00 242.00 258.00 NOTE
r-release-linux-x86_64 2.12.0 10.65 169.24 179.89 NOTE
r-release-osx-x86_64-mavericks 2.12.0 ERROR
r-release-osx-x86_64-snowleopard 2.12.0 NOTE
r-release-windows-ix86+x86_64 2.12.0 27.00 224.00 251.00 NOTE
r-oldrel-windows-ix86+x86_64 2.12.0 28.00 207.00 235.00 NOTE

Check Details

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘dChipIO’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘affyPLM’ ‘dChipIO’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.12.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘affyPLM’
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-osx-x86_64-snowleopard

Version: 2.12.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘aroma.core’
    
    Packages suggested but not available for checking:
     ‘preprocessCore’ ‘affyPLM’ ‘affy’ ‘limma’ ‘gcrma’ ‘dChipIO’ ‘Biobase’
     ‘oligo’ ‘oligoClasses’ ‘pdInfoBuilder’ ‘aroma.light’ ‘affxparser’
     ‘AffymetrixDataTestFiles’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'dChipIO' 'AffymetrixDataTestFiles'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘affyPLM’ ‘dChipIO’ ‘oligo’ ‘pdInfoBuilder’ ‘AffymetrixDataTestFiles’
Flavor: r-patched-solaris-sparc

Version: 2.12.0
Check: R code for possible problems
Result: NOTE
    extractFeatureSet.AffymetrixCelSet: no visible global function
     definition for ‘read.celfiles’
    pdInfo2Cdf: no visible global function definition for ‘read.celfiles’
    pdInfo2Cdf: no visible global function definition for
     ‘getPlatformDesign’
    writeCdf.AffyGenePDInfo: no visible global function definition for
     ‘cleanPlatformName’
Flavor: r-patched-solaris-sparc

Version: 2.12.0
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘affyPLM’, ‘oligo’
Flavor: r-patched-solaris-sparc

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘affyPLM’ ‘dChipIO’ ‘pdInfoBuilder’ ‘AffymetrixDataTestFiles’
Flavors: r-patched-solaris-x86, r-release-osx-x86_64-snowleopard

Version: 2.12.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘dChipIO’ ‘oligo’ ‘oligoClasses’ ‘pdInfoBuilder’
Flavor: r-release-linux-ix86

Version: 2.12.0
Check: R code for possible problems
Result: NOTE
    extractExpressionSet.ChipEffectSet: no visible global function
     definition for ‘geometry’
    extractFeatureSet.AffymetrixCelSet: no visible global function
     definition for ‘read.celfiles’
    fit.CrlmmModel: no visible global function definition for ‘getM’
    pdInfo2Cdf: no visible global function definition for ‘read.celfiles’
    pdInfo2Cdf: no visible global function definition for
     ‘getPlatformDesign’
    pdInfo2Cdf: no visible global function definition for ‘db’
    writeCdf.AffyGenePDInfo: no visible global function definition for
     ‘cleanPlatformName’
    writeCdf.AffyGenePDInfo: no visible global function definition for
     ‘geometry’
Flavor: r-release-linux-ix86

Version: 2.12.0
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘oligo’, ‘oligoClasses’
Flavor: r-release-linux-ix86