CRAN Package Check Results for Package aroma.affymetrix

Last updated on 2018-02-21 13:50:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1.0 51.88 251.40 303.28 OK
r-devel-linux-x86_64-debian-gcc 3.1.0 42.73 187.24 229.97 OK
r-devel-windows-ix86+x86_64 3.1.0 68.00 230.00 298.00 ERROR
r-patched-linux-x86_64 3.1.0 11.13 315.29 326.42 OK
r-patched-solaris-x86 3.1.0 395.00 OK
r-release-linux-x86_64 3.1.0 11.30 305.54 316.84 OK
r-release-windows-ix86+x86_64 3.1.0 45.00 322.00 367.00 NOTE
r-release-osx-x86_64 3.1.0 ERROR
r-oldrel-windows-ix86+x86_64 3.1.0 27.00 232.00 259.00 NOTE
r-oldrel-osx-x86_64 3.1.0 NOTE

Check Details

Version: 3.1.0
Check: installed package size
Result: NOTE
     installed size is 5.3Mb
     sub-directories of 1Mb or more:
     R 2.3Mb
     help 1.1Mb
Flavor: r-devel-windows-ix86+x86_64

Version: 3.1.0
Check: tests
Result: ERROR
     Running '001.setupExampleData,annotationData.R' [13s]
     Running '002.setupExampleData,rawData.R' [3s]
     Running 'AffymetrixCdfFile.R' [3s]
     Running 'AffymetrixCelFile.R' [2s]
     Running 'AffymetrixCelSet.R' [3s]
    Running the tests in 'tests/002.setupExampleData,rawData.R' failed.
    Last 13 lines of output:
     at #03. createLink(link = pathnameD, target = pathnameS, skip = TRUE)
     - createLink() is in environment 'R.utils'
    
     at #02. setupExampleData.AromaAffymetrix(aroma.affymetrix, dirs = "rawData",
     mustWork = FALSE)
     - setupExampleData.AromaAffymetrix() is in environment 'aroma.affymetrix'
    
     at #01. setupExampleData(aroma.affymetrix, dirs = "rawData", mustWork = FALSE)
     - setupExampleData() is in environment 'aroma.affymetrix'
    
     Error: Failed to create file link: rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL[.lnk] -> D:/temp/RtmpAtzqMQ/RLIBS_11b7878b03474/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL
     In addition: Warning message:
     In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, :
     running command 'C:\Windows\system32\cmd.exe /c mklink "rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL" "D:/temp/RtmpAtzqMQ/RLIBS_11b7878b03474/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL"' had status 1
     Execution halted
    Running the tests in 'tests/AffymetrixCdfFile.R' failed.
    Last 13 lines of output:
     - createLink() is in environment 'R.utils'
    
     at #02. setupExampleData.AromaAffymetrix(aroma.affymetrix, dataset = "FusionSDK_Test3",
     dirs = "annotationData", mustWork = FALSE)
     - setupExampleData.AromaAffymetrix() is in environment 'aroma.affymetrix'
    
     at #01. setupExampleData(aroma.affymetrix, dataset = "FusionSDK_Test3",
     dirs = "annotationData", mustWork = FALSE)
     - setupExampleData() is in environment 'aroma.affymetrix'
    
     Error: Failed to create file link: annotationData/chipTypes/Test3/Test3.CDF[.lnk] -> D:/temp/RtmpAtzqMQ/RLIBS_11b7878b03474/AffymetrixDataTestFiles/annotationData/chipTypes/Test3/1.XDA/Test3.CDF
     In addition: Warning message:
     In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, :
     running command 'C:\Windows\system32\cmd.exe /c mklink "annotationData/chipTypes/Test3/Test3.CDF" "D:/temp/RtmpAtzqMQ/RLIBS_11b7878b03474/AffymetrixDataTestFiles/annotationData/chipTypes/Test3/1.XDA/Test3.CDF"' had status 1
     Execution halted
    Running the tests in 'tests/AffymetrixCelSet.R' failed.
    Last 13 lines of output:
    
     at #04. createLink.default(link = pathnameD, target = pathnameS, skip = TRUE)
     - createLink.default() is in environment 'R.utils'
    
     at #03. createLink(link = pathnameD, target = pathnameS, skip = TRUE)
     - createLink() is in environment 'R.utils'
    
     at #02. setupExampleData.AromaAffymetrix(aroma.affymetrix, mustWork = FALSE)
     - setupExampleData.AromaAffymetrix() is in environment 'aroma.affymetrix'
    
     at #01. setupExampleData(aroma.affymetrix, mustWork = FALSE)
     - setupExampleData() is in environment 'aroma.affymetrix'
    
     Error: Pathname not found: rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL (rawData/FusionSDK_HG-Focus/HG-Focus/ exists, but nothing beyond; current directory is 'd:/Rcompile/CRANpkg/local/3.5/aroma.affymetrix.Rcheck/tests')
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 3.1.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'AffymetrixDataTestFiles'
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘aroma.core’
    
    Packages suggested but not available for checking:
     ‘affxparser’ ‘affyPLM’ ‘aroma.light’ ‘gcrma’ ‘oligo’ ‘oligoClasses’
     ‘pdInfoBuilder’ ‘AffymetrixDataTestFiles’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64