CRAN Package Check Results for Package aroma.core

Last updated on 2015-01-30 18:51:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.13.0 5.02 84.81 89.83 NOTE
r-devel-linux-x86_64-debian-gcc 2.13.0 5.64 83.14 88.78 NOTE
r-devel-linux-x86_64-fedora-clang 2.13.0 194.94 NOTE
r-devel-linux-x86_64-fedora-gcc 2.13.0 177.27 NOTE
r-devel-osx-x86_64-clang 2.13.0 184.71 NOTE
r-devel-windows-ix86+x86_64 2.13.0 21.00 115.00 136.00 NOTE
r-patched-linux-x86_64 2.13.0 5.66 98.98 104.64 NOTE
r-patched-solaris-sparc 2.13.0 1075.30 NOTE
r-patched-solaris-x86 2.13.0 230.60 NOTE
r-release-linux-ix86 2.13.0 6.92 113.33 120.25 NOTE
r-release-linux-x86_64 2.13.0 5.73 96.45 102.18 NOTE
r-release-osx-x86_64-mavericks 2.13.0 NOTE
r-release-osx-x86_64-snowleopard 2.13.0 NOTE
r-release-windows-ix86+x86_64 2.13.0 18.00 149.00 167.00 NOTE
r-oldrel-windows-ix86+x86_64 2.13.0 19.00 138.00 157.00 NOTE

Check Details

Version: 2.13.0
Check: package namespace information
Result: NOTE
    R < 3.0.2 had a limit of 500 registered S3 methods: found 781
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2.13.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘EBImage’ ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 2.13.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     apply.default byPathnames.SampleAnnotationSet calcMargins.matrix
     downloadPackagePatch.default drawCytoband.ChromosomalModel
     drawCytoband.profileCGH drawCytoband2.default
     findChangePointsByState.SegmentedGenomicSignalsInterface
     findSAFs.SampleAnnotationSet fit2d.matrix
     fitGenotypeConeByExpectile.matrix fitGenotypeConeBySfit.matrix
     fitMultiDimensionalCone.matrix fixSearchPath.AromaCore
     getAromaUflFile.AromaPlatformInterface
     getGenericSummary.RichDataFrame
     getListOfUnitNamesFiles.ChromosomalModel
     getListOfUnitTypesFiles.ChromosomalModel
     getLog2Ratios.CopyNumberSegmentationModel
     getOutputSet.ChromosomalModel getRawCnData.CopyNumberChromosomalModel
     getSampleLayerName.Explorer getSetTag.ChromosomalModel
     getVirtualColumnFunctions.RichDataFrame listToXml.list norm2d.matrix
     normalizeGenotypeCone.matrix patchPackage.default
     plotProfile2.profileCGH processTime.default requireWithMemory.default
     setVirtualColumnFunctions.RichDataFrame stextChipType.character
     stextLabel.AromaMicroarrayDataFile
     stextLabels.AromaMicroarrayDataFile stextSize.AromaMicroarrayDataFile
     stringTree.character whatDataType.default write.default
     writeAxesLayers.ChromosomeExplorer
     writeCopyNumberRegionLayers.ChromosomeExplorer
     writeCytobandLayers.ChromosomeExplorer writeGraphs.ChromosomeExplorer
     writeGridHorizontalLayers.ChromosomeExplorer
     writeRawCopyNumberLayers.ChromosomeExplorer
     writeRegions.ChromosomeExplorer reorder.BinnedScatter
     getVerbose.AromaRepository getVerbose.AromaSettings
     isDone.AromaTransform writeDataFrame.AromaUnitFracBCnBinarySet
     writeDataFrame.AromaUnitPscnBinarySet
     writeDataFrame.AromaUnitSignalBinaryFile
     writeDataFrame.AromaUnitSignalBinarySet
     writeDataFrame.AromaUnitTabularBinaryFile
     writeDataFrame.AromaUnitTotalCnBinarySet equals.AromaPlatform
     getVersion.Explorer as.character.AromaMicroarrayDataSetTuple
     as.character.AromaPlatform
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 2.13.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.13.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘GLAD’ ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-snowleopard

Version: 2.13.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘GLAD’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.13.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘EBImage’ ‘GLAD’ ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavor: r-release-osx-x86_64-mavericks