CRAN Package Check Results for Package aroma.core

Last updated on 2014-09-20 20:46:29.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.12.1 5.31 88.46 93.77 NOTE
r-devel-linux-x86_64-debian-gcc 2.12.1 5.78 87.66 93.44 NOTE
r-devel-linux-x86_64-fedora-clang 2.12.1 198.58 NOTE
r-devel-linux-x86_64-fedora-gcc 2.12.1 184.45 NOTE
r-devel-osx-x86_64-clang 2.12.1 161.69 NOTE
r-devel-windows-ix86+x86_64 2.12.1 17.00 115.00 132.00 NOTE
r-patched-linux-x86_64 2.12.1 5.51 95.85 101.36 NOTE
r-patched-solaris-sparc 2.12.1 1150.10 NOTE
r-patched-solaris-x86 2.12.1 227.50 NOTE
r-release-linux-ix86 2.12.1 7.15 119.94 127.09 NOTE
r-release-linux-x86_64 2.12.1 5.75 97.38 103.13 NOTE
r-release-osx-x86_64-mavericks 2.12.1 NOTE
r-release-osx-x86_64-snowleopard 2.12.1 NOTE
r-release-windows-ix86+x86_64 2.12.1 16.00 141.00 157.00 NOTE
r-oldrel-windows-ix86+x86_64 2.12.1 17.00 134.00 151.00 NOTE

Check Details

Version: 2.12.1
Check: package namespace information
Result: NOTE
    R < 3.0.2 had a limit of 500 registered S3 methods: found 782
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2.12.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.12.1
Check: R code for possible problems
Result: NOTE
    byName.AromaPlatform: no visible binding for global variable ‘Class’
    byPathnames.SampleAnnotationSet: no visible binding for global variable
     ‘Class’
    calculateAverageColumnAcrossFiles.GenericTabularFileSet: no visible
     binding for global variable ‘aromaSettings’
    countBasesInternal.AromaCellSequenceFile: no visible binding for global
     variable ‘aromaSettings’
    createImage.matrix: no visible binding for global variable
     ‘aromaSettings’
    findPngDevice.default: no visible binding for global variable ‘System’
    fit2d.matrix: no visible global function definition for
     ‘robustSmoothSpline’
    fromPath.SampleAnnotationSet: no visible binding for global variable
     ‘Class’
    getAverageFile.AromaUnitPscnBinarySet: no visible binding for global
     variable ‘rowSds’
    getAverageFile.AromaUnitPscnBinarySet: no visible binding for global
     variable ‘aromaSettings’
    getAverageFile.AromaUnitTotalCnBinarySet: no visible binding for global
     variable ‘rowSds’
    getAverageFile.AromaUnitTotalCnBinarySet: no visible binding for global
     variable ‘aromaSettings’
    getMaxLengthRepeats.AromaCellSequenceFile: no visible binding for
     global variable ‘aromaSettings’
    getOutputDataSet0.AromaTransform: no visible binding for global
     variable ‘Class’
    getSnpPositions.AromaCellSequenceFile: no visible binding for global
     variable ‘aromaSettings’
    getUnitAnnotationDataFile.AromaPlatformInterface: no visible binding
     for global variable ‘Class’
    writeDataFrame.AromaUnitSignalBinaryFile: no visible binding for global
     variable ‘nbrOfFiles’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 2.12.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘GLAD’ ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-snowleopard

Version: 2.12.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘GLAD’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.12.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘EBImage’ ‘GLAD’ ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks