CRAN Package Check Results for Package aroma.core

Last updated on 2015-02-28 17:48:30.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.13.0 5.07 84.33 89.40 NOTE
r-devel-linux-x86_64-debian-gcc 2.13.0 4.84 85.18 90.02 NOTE
r-devel-linux-x86_64-fedora-clang 2.13.0 178.44 NOTE
r-devel-linux-x86_64-fedora-gcc 2.13.0 160.56 NOTE
r-devel-osx-x86_64-clang 2.13.0 161.71 NOTE
r-devel-windows-ix86+x86_64 2.13.0 24.00 115.00 139.00 NOTE
r-patched-linux-x86_64 2.13.0 6.68 98.31 104.99 NOTE
r-patched-solaris-sparc 2.13.0 1191.90 NOTE
r-patched-solaris-x86 2.13.0 232.50 NOTE
r-release-linux-ix86 2.13.0 7.17 115.85 123.02 NOTE
r-release-linux-x86_64 2.13.0 6.41 102.60 109.01 NOTE
r-release-osx-x86_64-mavericks 2.13.0 NOTE
r-release-osx-x86_64-snowleopard 2.13.0 NOTE
r-release-windows-ix86+x86_64 2.13.0 20.00 152.00 172.00 NOTE
r-oldrel-windows-ix86+x86_64 2.13.0 21.00 149.00 170.00 NOTE

Check Details

Version: 2.13.0
Check: package namespace information
Result: NOTE
    R < 3.0.2 had a limit of 500 registered S3 methods: found 781
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2.13.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.13.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     apply.default as.character.AromaMicroarrayDataSetTuple
     as.character.AromaPlatform byPathnames.SampleAnnotationSet
     calcMargins.matrix downloadPackagePatch.default
     drawCytoband.ChromosomalModel drawCytoband.profileCGH
     drawCytoband2.default equals.AromaPlatform
     findChangePointsByState.SegmentedGenomicSignalsInterface
     findSAFs.SampleAnnotationSet fit2d.matrix
     fitGenotypeConeByExpectile.matrix fitGenotypeConeBySfit.matrix
     fitMultiDimensionalCone.matrix fixSearchPath.AromaCore
     getAromaUflFile.AromaPlatformInterface
     getGenericSummary.RichDataFrame
     getListOfUnitNamesFiles.ChromosomalModel
     getListOfUnitTypesFiles.ChromosomalModel
     getLog2Ratios.CopyNumberSegmentationModel
     getOutputSet.ChromosomalModel getRawCnData.CopyNumberChromosomalModel
     getSampleLayerName.Explorer getSetTag.ChromosomalModel
     getVerbose.AromaRepository getVerbose.AromaSettings
     getVersion.Explorer getVirtualColumnFunctions.RichDataFrame
     isDone.AromaTransform listToXml.list norm2d.matrix
     normalizeGenotypeCone.matrix patchPackage.default
     plotProfile2.profileCGH processTime.default reorder.BinnedScatter
     requireWithMemory.default setVirtualColumnFunctions.RichDataFrame
     stextChipType.character stextLabel.AromaMicroarrayDataFile
     stextLabels.AromaMicroarrayDataFile stextSize.AromaMicroarrayDataFile
     stringTree.character whatDataType.default write.default
     writeAxesLayers.ChromosomeExplorer
     writeCopyNumberRegionLayers.ChromosomeExplorer
     writeCytobandLayers.ChromosomeExplorer
     writeDataFrame.AromaUnitFracBCnBinarySet
     writeDataFrame.AromaUnitPscnBinarySet
     writeDataFrame.AromaUnitSignalBinaryFile
     writeDataFrame.AromaUnitSignalBinarySet
     writeDataFrame.AromaUnitTabularBinaryFile
     writeDataFrame.AromaUnitTotalCnBinarySet
     writeGraphs.ChromosomeExplorer
     writeGridHorizontalLayers.ChromosomeExplorer
     writeRawCopyNumberLayers.ChromosomeExplorer
     writeRegions.ChromosomeExplorer
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 2.13.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘GLAD’ ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-snowleopard

Version: 2.13.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘GLAD’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.13.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘EBImage’ ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 2.13.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘EBImage’ ‘GLAD’ ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
Flavor: r-release-osx-x86_64-mavericks