CRAN Package Check Results for Package aspace

Last updated on 2015-07-05 10:46:41.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.2 1.92 23.90 25.82 NOTE
r-devel-linux-x86_64-debian-gcc 3.2 1.83 23.12 24.95 NOTE
r-devel-linux-x86_64-fedora-clang 3.2 48.17 NOTE
r-devel-linux-x86_64-fedora-gcc 3.2 46.31 NOTE
r-devel-osx-x86_64-clang 3.2 47.79 NOTE
r-devel-windows-ix86+x86_64 3.2 11.00 38.00 49.00 NOTE
r-patched-linux-x86_64 3.2 1.93 22.58 24.51 NOTE
r-patched-solaris-sparc 3.2 295.20 NOTE
r-patched-solaris-x86 3.2 69.90 NOTE
r-release-linux-x86_64 3.2 1.95 23.07 25.02 NOTE
r-release-osx-x86_64-mavericks 3.2 NOTE
r-release-windows-ix86+x86_64 3.2 13.00 38.00 51.00 NOTE
r-oldrel-windows-ix86+x86_64 3.2 22.00 88.00 110.00 NOTE

Check Details

Version: 3.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘Hmisc’ ‘splancs’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Hmisc’ ‘shapefiles’ ‘splancs’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.2
Check: R code for possible problems
Result: NOTE
    CF: no visible binding for global variable ‘activities’
    CF: no visible global function definition for ‘write.table’
    CF2PTS: no visible binding for global variable ‘activities’
    CF2PTS: no visible binding for global variable ‘activities2’
    CF2PTS: no visible global function definition for ‘write.table’
    CMD: no visible binding for global variable ‘activities’
    CMD: no visible global function definition for ‘chull’
    CMD: no visible global function definition for ‘gridpts’
    CMD: no visible global function definition for ‘write.table’
    calc_box: no visible binding for global variable ‘activities’
    calc_box: no visible global function definition for ‘wtd.var’
    calc_box: no visible global function definition for ‘sd’
    calc_box: no visible global function definition for ‘write.table’
    calc_sdd: no visible binding for global variable ‘activities’
    calc_sdd: no visible global function definition for ‘write.table’
    calc_sde: no visible binding for global variable ‘activities’
    calc_sde: no visible global function definition for ‘write.table’
    distances: no visible binding for global variable ‘centre’
    distances: no visible binding for global variable ‘activities’
    mean_centre: no visible binding for global variable ‘activities’
    mean_centre: no visible global function definition for ‘write.table’
    median_centre: no visible binding for global variable ‘activities’
    median_centre: no visible global function definition for ‘median’
    median_centre: no visible global function definition for ‘write.table’
    plot_box: no visible global function definition for ‘par’
    plot_box: no visible binding for global variable ‘r.BOX’
    plot_box: no visible global function definition for ‘plot’
    plot_box: no visible global function definition for ‘title’
    plot_box: no visible global function definition for ‘segments’
    plot_box: no visible global function definition for ‘abline’
    plot_box: no visible global function definition for ‘points’
    plot_box: no visible global function definition for ‘dev.off’
    plot_centres: no visible global function definition for ‘par’
    plot_centres: no visible binding for global variable ‘r.SDE’
    plot_centres: no visible global function definition for ‘plot’
    plot_centres: no visible global function definition for ‘points’
    plot_centres: no visible binding for global variable ‘r.CF’
    plot_centres: no visible binding for global variable ‘r.median’
    plot_centres: no visible binding for global variable ‘r.CMD’
    plot_centres: no visible binding for global variable ‘r.CF2PTS’
    plot_sdd: no visible global function definition for ‘par’
    plot_sdd: no visible binding for global variable ‘r.SDD’
    plot_sdd: no visible global function definition for ‘plot’
    plot_sdd: no visible global function definition for ‘lines’
    plot_sdd: no visible global function definition for ‘title’
    plot_sdd: no visible global function definition for ‘abline’
    plot_sdd: no visible global function definition for ‘points’
    plot_sdd: no visible global function definition for ‘dev.off’
    plot_sde: no visible global function definition for ‘par’
    plot_sde: no visible binding for global variable ‘r.SDE’
    plot_sde: no visible global function definition for ‘plot’
    plot_sde: no visible global function definition for ‘lines’
    plot_sde: no visible global function definition for ‘title’
    plot_sde: no visible global function definition for ‘segments’
    plot_sde: no visible global function definition for ‘points’
    plot_sde: no visible global function definition for ‘dev.off’
    Undefined global functions or variables:
     abline activities activities2 centre chull dev.off gridpts lines
     median par plot points r.BOX r.CF r.CF2PTS r.CMD r.SDD r.SDE r.median
     sd segments title write.table wtd.var
    
    Found the following assignments to the global environment:
    File ‘aspace/R/CF.R’:
     assign("cfloc", cfloc, pos = 1)
     assign("r.CF", r.CF, pos = 1)
     assign("cfatt", result.CF, pos = 1)
    File ‘aspace/R/CF2PTS.R’:
     assign("cf2ptsloc", cf2ptsloc, pos = 1)
     assign("r.CF2PTS", r.CF2PTS, pos = 1)
     assign("cf2ptsatt", result.CF2PTS, pos = 1)
    File ‘aspace/R/CMD.R’:
     assign("cmdloc", cmdloc, pos = 1)
     assign("r.CMD", r.CMD, pos = 1)
     assign("cmdatt", result.CMD, pos = 1)
    File ‘aspace/R/calc_box.R’:
     assign("boxloc", boxloc, pos = 1)
     assign("r.BOX", r.BOX, pos = 1)
     assign("boxatt", result.box, pos = 1)
    File ‘aspace/R/calc_sdd.R’:
     assign("sddloc", sddloc, pos = 1)
     assign("r.SDD", r.SDD, pos = 1)
     assign("sddatt", result.sdd, pos = 1)
    File ‘aspace/R/calc_sde.R’:
     assign("r.SDE", r.SDE, pos = 1)
     assign("sdeatt", result.sde, pos = 1)
     assign("sdeloc", sdeloc, pos = 1)
    File ‘aspace/R/mean_centre.R’:
     assign("meanloc", meanloc, pos = 1)
     assign("r.mean", r.mean, pos = 1)
     assign("meanatt", result.mean, pos = 1)
    File ‘aspace/R/median_centre.R’:
     assign("medianloc", medianloc, pos = 1)
     assign("r.median", r.median, pos = 1)
     assign("medianatt", result.median, pos = 1)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang

Version: 3.2
Check: Rd line widths
Result: NOTE
    Rd file 'calc_box.Rd':
     \examples lines wider than 100 characters:
     ## plot_box by default takes as input the result produced from the calc_box, read from the current workspace.
    
    Rd file 'calc_sdd.Rd':
     \examples lines wider than 100 characters:
     ## plot_sdd by default takes as input the result produced from the calc_sdd, read from the current workspace.
    
    Rd file 'calc_sde.Rd':
     \examples lines wider than 100 characters:
     ## plot_sde by default takes as input the result produced from the calc_sde, read from the current workspace.
    
    Rd file 'centre.Rd':
     \examples lines wider than 100 characters:
     ## plot_centres by default takes as input the result produced from mean_centre, median centre, CF, CF2PTS, and CMD, read from the curre ... [TRUNCATED]
    
    Rd file 'plot_box.Rd':
     \examples lines wider than 100 characters:
     ## plot_box by default takes as input the result produced from the calc_box, read from the current workspace.
    
    Rd file 'plot_centres.Rd':
     \examples lines wider than 100 characters:
     ## plot_centres by default takes as input the result produced from CF, CF2PTS, and CMD, read from the current workspace.
    
    Rd file 'plot_sdd.Rd':
     \examples lines wider than 100 characters:
     ## plot_sdd by default takes as input the result produced from the calc_sdd, read from the current workspace.
    
    Rd file 'plot_sde.Rd':
     \examples lines wider than 100 characters:
     ## plot_sde by default takes as input the result produced from the calc_sde, read from the current workspace.
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.2
Check: R code for possible problems
Result: NOTE
    CF: no visible binding for global variable ‘activities’
    CF: no visible global function definition for ‘write.table’
    CF2PTS: no visible binding for global variable ‘activities’
    CF2PTS: no visible binding for global variable ‘activities2’
    CF2PTS: no visible global function definition for ‘write.table’
    CMD: no visible binding for global variable ‘activities’
    CMD: no visible global function definition for ‘chull’
    CMD: no visible global function definition for ‘gridpts’
    CMD: no visible global function definition for ‘write.table’
    calc_box: no visible binding for global variable ‘activities’
    calc_box: no visible global function definition for ‘wtd.var’
    calc_box: no visible global function definition for ‘sd’
    calc_box: no visible global function definition for ‘write.table’
    calc_sdd: no visible binding for global variable ‘activities’
    calc_sdd: no visible global function definition for ‘write.table’
    calc_sde: no visible binding for global variable ‘activities’
    calc_sde: no visible global function definition for ‘write.table’
    distances: no visible binding for global variable ‘centre’
    distances: no visible binding for global variable ‘activities’
    mean_centre: no visible binding for global variable ‘activities’
    mean_centre: no visible global function definition for ‘write.table’
    median_centre: no visible binding for global variable ‘activities’
    median_centre: no visible global function definition for ‘median’
    median_centre: no visible global function definition for ‘write.table’
    plot_box: no visible global function definition for ‘par’
    plot_box: no visible binding for global variable ‘r.BOX’
    plot_box: no visible global function definition for ‘plot’
    plot_box: no visible global function definition for ‘title’
    plot_box: no visible global function definition for ‘segments’
    plot_box: no visible global function definition for ‘abline’
    plot_box: no visible global function definition for ‘points’
    plot_box: no visible global function definition for ‘dev.off’
    plot_centres: no visible global function definition for ‘par’
    plot_centres: no visible binding for global variable ‘r.SDE’
    plot_centres: no visible global function definition for ‘plot’
    plot_centres: no visible global function definition for ‘points’
    plot_centres: no visible binding for global variable ‘r.CF’
    plot_centres: no visible binding for global variable ‘r.median’
    plot_centres: no visible binding for global variable ‘r.CMD’
    plot_centres: no visible binding for global variable ‘r.CF2PTS’
    plot_sdd: no visible global function definition for ‘par’
    plot_sdd: no visible binding for global variable ‘r.SDD’
    plot_sdd: no visible global function definition for ‘plot’
    plot_sdd: no visible global function definition for ‘lines’
    plot_sdd: no visible global function definition for ‘title’
    plot_sdd: no visible global function definition for ‘abline’
    plot_sdd: no visible global function definition for ‘points’
    plot_sdd: no visible global function definition for ‘dev.off’
    plot_sde: no visible global function definition for ‘par’
    plot_sde: no visible binding for global variable ‘r.SDE’
    plot_sde: no visible global function definition for ‘plot’
    plot_sde: no visible global function definition for ‘lines’
    plot_sde: no visible global function definition for ‘title’
    plot_sde: no visible global function definition for ‘segments’
    plot_sde: no visible global function definition for ‘points’
    plot_sde: no visible global function definition for ‘dev.off’
    Undefined global functions or variables:
     abline activities activities2 centre chull dev.off gridpts lines
     median par plot points r.BOX r.CF r.CF2PTS r.CMD r.SDD r.SDE r.median
     sd segments title write.table wtd.var
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 3.2
Check: R code for possible problems
Result: NOTE
    CF: no visible binding for global variable ‘activities’
    CF2PTS: no visible binding for global variable ‘activities’
    CF2PTS: no visible binding for global variable ‘activities2’
    CMD: no visible binding for global variable ‘activities’
    CMD: no visible global function definition for ‘gridpts’
    calc_box: no visible binding for global variable ‘activities’
    calc_box: no visible global function definition for ‘wtd.var’
    calc_sdd: no visible binding for global variable ‘activities’
    calc_sde: no visible binding for global variable ‘activities’
    distances: no visible binding for global variable ‘centre’
    distances: no visible binding for global variable ‘activities’
    mean_centre: no visible binding for global variable ‘activities’
    median_centre: no visible binding for global variable ‘activities’
    plot_box: no visible binding for global variable ‘r.BOX’
    plot_centres: no visible binding for global variable ‘r.SDE’
    plot_centres: no visible binding for global variable ‘r.CF’
    plot_centres: no visible binding for global variable ‘r.median’
    plot_centres: no visible binding for global variable ‘r.CMD’
    plot_centres: no visible binding for global variable ‘r.CF2PTS’
    plot_sdd: no visible binding for global variable ‘r.SDD’
    plot_sde: no visible binding for global variable ‘r.SDE’
    Undefined global functions or variables:
     activities activities2 centre gridpts r.BOX r.CF r.CF2PTS r.CMD r.SDD
     r.SDE r.median wtd.var
    
    Found the following assignments to the global environment:
    File ‘aspace/R/CF.R’:
     assign("cfloc", cfloc, pos = 1)
     assign("r.CF", r.CF, pos = 1)
     assign("cfatt", result.CF, pos = 1)
    File ‘aspace/R/CF2PTS.R’:
     assign("cf2ptsloc", cf2ptsloc, pos = 1)
     assign("r.CF2PTS", r.CF2PTS, pos = 1)
     assign("cf2ptsatt", result.CF2PTS, pos = 1)
    File ‘aspace/R/CMD.R’:
     assign("cmdloc", cmdloc, pos = 1)
     assign("r.CMD", r.CMD, pos = 1)
     assign("cmdatt", result.CMD, pos = 1)
    File ‘aspace/R/calc_box.R’:
     assign("boxloc", boxloc, pos = 1)
     assign("r.BOX", r.BOX, pos = 1)
     assign("boxatt", result.box, pos = 1)
    File ‘aspace/R/calc_sdd.R’:
     assign("sddloc", sddloc, pos = 1)
     assign("r.SDD", r.SDD, pos = 1)
     assign("sddatt", result.sdd, pos = 1)
    File ‘aspace/R/calc_sde.R’:
     assign("r.SDE", r.SDE, pos = 1)
     assign("sdeatt", result.sde, pos = 1)
     assign("sdeloc", sdeloc, pos = 1)
    File ‘aspace/R/mean_centre.R’:
     assign("meanloc", meanloc, pos = 1)
     assign("r.mean", r.mean, pos = 1)
     assign("meanatt", result.mean, pos = 1)
    File ‘aspace/R/median_centre.R’:
     assign("medianloc", medianloc, pos = 1)
     assign("r.median", r.median, pos = 1)
     assign("medianatt", result.median, pos = 1)
Flavor: r-devel-osx-x86_64-clang

Version: 3.2
Check: R code for possible problems
Result: NOTE
    CF: no visible binding for global variable ‘activities’
    CF2PTS: no visible binding for global variable ‘activities’
    CF2PTS: no visible binding for global variable ‘activities2’
    CMD: no visible binding for global variable ‘activities’
    CMD: no visible global function definition for ‘gridpts’
    calc_box: no visible binding for global variable ‘activities’
    calc_box: no visible global function definition for ‘wtd.var’
    calc_sdd: no visible binding for global variable ‘activities’
    calc_sde: no visible binding for global variable ‘activities’
    distances: no visible binding for global variable ‘centre’
    distances: no visible binding for global variable ‘activities’
    mean_centre: no visible binding for global variable ‘activities’
    median_centre: no visible binding for global variable ‘activities’
    plot_box: no visible binding for global variable ‘r.BOX’
    plot_centres: no visible binding for global variable ‘r.SDE’
    plot_centres: no visible binding for global variable ‘r.CF’
    plot_centres: no visible binding for global variable ‘r.median’
    plot_centres: no visible binding for global variable ‘r.CMD’
    plot_centres: no visible binding for global variable ‘r.CF2PTS’
    plot_sdd: no visible binding for global variable ‘r.SDD’
    plot_sde: no visible binding for global variable ‘r.SDE’
    
    Found the following assignments to the global environment:
    File ‘aspace/R/CF.R’:
     assign("cfloc", cfloc, pos = 1)
     assign("r.CF", r.CF, pos = 1)
     assign("cfatt", result.CF, pos = 1)
    File ‘aspace/R/CF2PTS.R’:
     assign("cf2ptsloc", cf2ptsloc, pos = 1)
     assign("r.CF2PTS", r.CF2PTS, pos = 1)
     assign("cf2ptsatt", result.CF2PTS, pos = 1)
    File ‘aspace/R/CMD.R’:
     assign("cmdloc", cmdloc, pos = 1)
     assign("r.CMD", r.CMD, pos = 1)
     assign("cmdatt", result.CMD, pos = 1)
    File ‘aspace/R/calc_box.R’:
     assign("boxloc", boxloc, pos = 1)
     assign("r.BOX", r.BOX, pos = 1)
     assign("boxatt", result.box, pos = 1)
    File ‘aspace/R/calc_sdd.R’:
     assign("sddloc", sddloc, pos = 1)
     assign("r.SDD", r.SDD, pos = 1)
     assign("sddatt", result.sdd, pos = 1)
    File ‘aspace/R/calc_sde.R’:
     assign("r.SDE", r.SDE, pos = 1)
     assign("sdeatt", result.sde, pos = 1)
     assign("sdeloc", sdeloc, pos = 1)
    File ‘aspace/R/mean_centre.R’:
     assign("meanloc", meanloc, pos = 1)
     assign("r.mean", r.mean, pos = 1)
     assign("meanatt", result.mean, pos = 1)
    File ‘aspace/R/median_centre.R’:
     assign("medianloc", medianloc, pos = 1)
     assign("r.median", r.median, pos = 1)
     assign("medianatt", result.median, pos = 1)
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.2
Check: R code for possible problems
Result: NOTE
    CF: no visible binding for global variable ‘activities’
    CF2PTS: no visible binding for global variable ‘activities’
    CF2PTS: no visible binding for global variable ‘activities2’
    CMD: no visible binding for global variable ‘activities’
    CMD: no visible global function definition for ‘gridpts’
    calc_box: no visible binding for global variable ‘activities’
    calc_box: no visible global function definition for ‘wtd.var’
    calc_sdd: no visible binding for global variable ‘activities’
    calc_sde: no visible binding for global variable ‘activities’
    distances: no visible binding for global variable ‘centre’
    distances: no visible binding for global variable ‘activities’
    mean_centre: no visible binding for global variable ‘activities’
    median_centre: no visible binding for global variable ‘activities’
    plot_box: no visible binding for global variable ‘r.BOX’
    plot_centres: no visible binding for global variable ‘r.SDE’
    plot_centres: no visible binding for global variable ‘r.CF’
    plot_centres: no visible binding for global variable ‘r.median’
    plot_centres: no visible binding for global variable ‘r.CMD’
    plot_centres: no visible binding for global variable ‘r.CF2PTS’
    plot_sdd: no visible binding for global variable ‘r.SDD’
    plot_sde: no visible binding for global variable ‘r.SDE’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64