CRAN Package Check Results for Package bams

Last updated on 2014-04-18 20:47:55.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.6 0.82 13.61 14.44 NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang 1.6 27.66 NOTE
r-devel-linux-x86_64-fedora-gcc 1.6 25.85 NOTE
r-devel-macosx-x86_64-clang 1.6 30.84 NOTE
r-devel-macosx-x86_64-gcc 1.6 NOTE
r-devel-windows-ix86+x86_64 1.6 3.00 22.00 25.00 NOTE
r-patched-linux-x86_64 1.6 0.92 13.43 14.35 NOTE
r-patched-solaris-sparc 1.6 153.20 NOTE
r-patched-solaris-x86 1.6 40.00 NOTE
r-release-linux-ix86 1.6 2.00 28.00 30.00 NOTE
r-release-linux-x86_64 1.6 0.78 13.42 14.20 NOTE
r-release-windows-ix86+x86_64 1.6 3.00 22.00 25.00 NOTE
r-oldrel-windows-ix86+x86_64 1.6 3.00 24.00 27.00 NOTE

Check Details

Version: 1.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gada’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.6
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: ‘ggplot2::coord_transform’
    Unexported objects imported by ':::' calls:
     ‘cghseg:::segmeanCO’ ‘ggplot2:::GeomRect’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.6
Check: R code for possible problems
Result: NOTE
    gada.results : <anonymous> : <anonymous>: no visible global function
     definition for ‘WextIextToSegments’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘GLAD’ ‘gada’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-macosx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.6
Check: R code for possible problems
Result: NOTE
    gada.results : <anonymous> : <anonymous>: no visible global function
     definition for ‘WextIextToSegments’
    runglad: no visible global function definition for ‘as.profileCGH’
    runglad : <anonymous>: no visible binding for global variable ‘daglad’
    runglad : <anonymous> : <anonymous>: no visible binding for global
     variable ‘glad’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-macosx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘GLAD’ ‘DNAcopy’ ‘gada’ ‘ggplot2’ ‘changepoint’
Flavor: r-devel-macosx-x86_64-gcc

Version: 1.6
Check: dependencies in R code
Result: NOTE
    Unexported object imported by a ':::' call: ‘cghseg:::segmeanCO’
     See the note in ?`:::` about the use of this operator.
    Unavailable namespace imported from by a ':::' call: ‘ggplot2’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-macosx-x86_64-gcc

Version: 1.6
Check: R code for possible problems
Result: NOTE
    dnacopy.smoothvec : <anonymous>: no visible global function definition
     for ‘smooth.CNA’
    dnacopy.smoothvec : <anonymous>: no visible global function definition
     for ‘segment’
    dnacopy.smoothvec : <anonymous>: no visible binding for global variable
     ‘segment’
    gada.results : <anonymous> : <anonymous>: no visible global function
     definition for ‘WextIextToSegments’
    run.pelt: no visible binding for global variable ‘cpt.mean’
    runglad: no visible global function definition for ‘as.profileCGH’
    runglad : <anonymous>: no visible binding for global variable ‘daglad’
    runglad : <anonymous> : <anonymous>: no visible binding for global
     variable ‘glad’
Flavor: r-devel-macosx-x86_64-gcc