CRAN Package Check Results for Package bartMachine

Last updated on 2015-07-31 23:47:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.0 5.21 71.66 76.87 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.0 4.83 70.57 75.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.0 162.83 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.0 160.39 NOTE
r-devel-osx-x86_64-clang 1.2.0 122.66 NOTE
r-devel-windows-ix86+x86_64 1.2.0 16.00 121.00 137.00 NOTE
r-patched-linux-x86_64 1.2.0 4.94 73.80 78.74 NOTE
r-patched-solaris-sparc 1.2.0 968.80 NOTE
r-patched-solaris-x86 1.2.0 220.00 NOTE
r-release-linux-x86_64 1.2.0 4.87 72.59 77.46 NOTE
r-release-osx-x86_64-mavericks 1.2.0 NOTE
r-release-windows-ix86+x86_64 1.2.0 20.00 116.00 136.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2.0 21.00 160.00 181.00 NOTE

Check Details

Version: 1.2.0
Check: installed package size
Result: NOTE
     installed size is 5.9Mb
     sub-directories of 1Mb or more:
     doc 2.2Mb
     java 3.5Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.0
Check: R code for possible problems
Result: NOTE
    bart_machine_get_posterior: no visible global function definition for
     ‘na.omit’
    bart_predict_for_test_data: no visible global function definition for
     ‘predict’
    build_bart_machine: no visible global function definition for ‘na.omit’
    build_bart_machine: no visible global function definition for ‘lm’
    build_bart_machine: no visible global function definition for ‘var’
    build_bart_machine: no visible global function definition for ‘rnorm’
    build_bart_machine: no visible global function definition for ‘rchisq’
    build_bart_machine_cv: no visible global function definition for
     ‘rnorm’
    build_bart_machine_cv: no visible global function definition for
     ‘quantile’
    calc_credible_intervals: no visible global function definition for
     ‘quantile’
    calc_prediction_intervals: no visible global function definition for
     ‘rnorm’
    calc_prediction_intervals: no visible global function definition for
     ‘quantile’
    check_bart_error_assumptions: no visible global function definition for
     ‘graphics.off’
    check_bart_error_assumptions: no visible global function definition for
     ‘par’
    check_bart_error_assumptions: no visible global function definition for
     ‘shapiro.test’
    check_bart_error_assumptions: no visible global function definition for
     ‘plot’
    check_bart_error_assumptions: no visible global function definition for
     ‘abline’
    cov_importance_test: no visible global function definition for ‘hist’
    cov_importance_test: no visible global function definition for ‘abline’
    get_sigsqs: no visible global function definition for ‘quantile’
    get_sigsqs: no visible global function definition for ‘hist’
    get_sigsqs: no visible global function definition for ‘abline’
    interaction_investigator: no visible binding for global variable ‘sd’
    interaction_investigator: no visible global function definition for
     ‘par’
    interaction_investigator: no visible global function definition for
     ‘barplot’
    interaction_investigator: no visible global function definition for
     ‘segments’
    interaction_investigator: no visible global function definition for
     ‘rgb’
    investigate_var_importance: no visible binding for global variable ‘sd’
    investigate_var_importance: no visible global function definition for
     ‘par’
    investigate_var_importance: no visible global function definition for
     ‘barplot’
    investigate_var_importance: no visible global function definition for
     ‘segments’
    investigate_var_importance: no visible global function definition for
     ‘rgb’
    k_fold_cv: no visible global function definition for ‘rnorm’
    k_fold_cv: no visible global function definition for ‘quantile’
    pd_plot: no visible global function definition for ‘quantile’
    pd_plot: no visible global function definition for ‘qnorm’
    pd_plot: no visible binding for global variable ‘quantile’
    pd_plot: no visible global function definition for ‘plot’
    pd_plot: no visible global function definition for ‘polygon’
    pd_plot: no visible global function definition for ‘lines’
    plot_convergence_diagnostics: no visible global function definition for
     ‘par’
    plot_mh_acceptance_reject: no visible global function definition for
     ‘plot’
    plot_mh_acceptance_reject: no visible global function definition for
     ‘abline’
    plot_mh_acceptance_reject: no visible global function definition for
     ‘points’
    plot_mh_acceptance_reject: no visible global function definition for
     ‘lines’
    plot_mh_acceptance_reject: no visible global function definition for
     ‘loess.smooth’
    plot_sigsqs_convergence_diagnostics: no visible global function
     definition for ‘plot’
    plot_sigsqs_convergence_diagnostics: no visible global function
     definition for ‘quantile’
    plot_sigsqs_convergence_diagnostics: no visible global function
     definition for ‘points’
    plot_sigsqs_convergence_diagnostics: no visible global function
     definition for ‘abline’
    plot_tree_depths: no visible global function definition for ‘plot’
    plot_tree_depths: no visible global function definition for ‘lines’
    plot_tree_depths: no visible global function definition for ‘rgb’
    plot_tree_depths: no visible global function definition for ‘abline’
    plot_tree_num_nodes: no visible global function definition for ‘plot’
    plot_tree_num_nodes: no visible global function definition for ‘lines’
    plot_tree_num_nodes: no visible global function definition for ‘rgb’
    plot_tree_num_nodes: no visible global function definition for ‘abline’
    plot_y_vs_yhat: no visible global function definition for ‘plot’
    plot_y_vs_yhat: no visible global function definition for ‘segments’
    plot_y_vs_yhat: no visible global function definition for ‘points’
    plot_y_vs_yhat: no visible global function definition for ‘abline’
    rmse_by_num_trees: no visible binding for global variable ‘sd’
    rmse_by_num_trees: no visible global function definition for ‘segments’
    shapiro_wilk_p_val: no visible global function definition for
     ‘shapiro.test’
    summary.bartMachine: no visible global function definition for
     ‘shapiro.test’
    summary.bartMachine: no visible global function definition for ‘t.test’
    var_selection_by_permute: no visible binding for global variable
     ‘quantile’
    var_selection_by_permute: no visible global function definition for
     ‘quantile’
    var_selection_by_permute: no visible binding for global variable ‘sd’
    var_selection_by_permute: no visible global function definition for
     ‘par’
    var_selection_by_permute: no visible global function definition for
     ‘axis’
    var_selection_by_permute: no visible global function definition for
     ‘points’
    var_selection_by_permute : <anonymous>: no visible global function
     definition for ‘segments’
    var_selection_by_permute : <anonymous>: no visible global function
     definition for ‘quantile’
    var_selection_by_permute: no visible global function definition for
     ‘abline’
    Undefined global functions or variables:
     abline axis barplot graphics.off hist lines lm loess.smooth na.omit
     par plot points polygon predict qnorm quantile rchisq rgb rnorm sd
     segments shapiro.test t.test var
    Consider adding
     importFrom("grDevices", "graphics.off", "rgb")
     importFrom("graphics", "abline", "axis", "barplot", "hist", "lines",
     "par", "plot", "points", "polygon", "segments")
     importFrom("stats", "lm", "loess.smooth", "na.omit", "predict",
     "qnorm", "quantile", "rchisq", "rnorm", "sd",
     "shapiro.test", "t.test", "var")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64