CRAN Package Check Results for Package beadarrayFilter

Last updated on 2014-08-01 08:49:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 9.31 110.18 119.48 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.0 9.09 106.18 115.26 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.0 279.33 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.0 268.68 NOTE
r-devel-osx-x86_64-clang 1.1.0 214.81 NOTE
r-devel-windows-ix86+x86_64 1.1.0 26.00 153.00 179.00 NOTE
r-patched-linux-x86_64 1.1.0 7.98 99.74 107.72 NOTE
r-patched-solaris-sparc 1.1.0 1283.20 NOTE
r-patched-solaris-x86 1.1.0 297.60 NOTE
r-release-linux-ix86 1.1.0 9.16 115.97 125.13 NOTE
r-release-linux-x86_64 1.1.0 8.05 97.00 105.04 NOTE
r-release-osx-x86_64-mavericks 1.1.0 ERROR
r-release-osx-x86_64-snowleopard 1.1.0 ERROR
r-release-windows-ix86+x86_64 1.1.0 32.00 145.00 177.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.0 20.00 126.00 146.00 NOTE

Check Details

Version: 1.1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     RColorBrewer beadarray
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: Rd line widths
Result: NOTE
    Rd file 'iccFun.Rd':
     \examples lines wider than 100 characters:
     aaa<-na.omit(data.frame(I(rownames(exprs(exampleSummaryDataNorm))),exprs(exampleSummaryDataNorm)))[1:40,]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     beadarrayExampleData lumi
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.1.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1.0
Check: R code for possible problems
Result: NOTE
    beadtypeFilter: no visible global function definition for beadNum
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in beadarrayFilter-Ex.R failed
    The error most likely occurred in:
    
    > ### Name: MLM.beadarray
    > ### Title: Multi-level Mixed model
    > ### Aliases: MLM.beadarray
    > ### Keywords: differential expression
    >
    > ### ** Examples
    >
    > require(beadarrayExampleData)
    Loading required package: beadarrayExampleData
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called beadarrayExampleData
    > data(exampleSummaryData)
    Warning in data(exampleSummaryData) :
     data set exampleSummaryData not found
    > exampleSummaryDatalog2 <- channel(exampleSummaryData, "G")[1:40,]
    Error in channel(exampleSummaryData, "G") :
     error in evaluating the argument 'object' in selecting a method for function 'channel': Error: object 'exampleSummaryData' not found
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard