CRAN Package Check Results for Package beadarrayFilter

Last updated on 2015-07-07 14:48:02.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 6.94 70.48 77.42 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.0 8.72 68.74 77.46 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.0 163.32 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.0 145.33 NOTE
r-devel-osx-x86_64-clang 1.1.0 134.74 NOTE
r-devel-windows-ix86+x86_64 1.1.0 20.00 111.00 131.00 NOTE
r-patched-linux-x86_64 1.1.0 6.58 69.58 76.16 NOTE
r-patched-solaris-sparc 1.1.0 964.00 NOTE
r-patched-solaris-x86 1.1.0 213.70 NOTE
r-release-linux-x86_64 1.1.0 6.86 69.44 76.30 NOTE
r-release-osx-x86_64-mavericks 1.1.0 ERROR
r-release-windows-ix86+x86_64 1.1.0 22.00 106.00 128.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.0 39.00 160.00 199.00 NOTE

Check Details

Version: 1.1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘RColorBrewer’ ‘beadarray’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: R code for possible problems
Result: NOTE
    beadtypeFilter: no visible global function definition for ‘na.omit’
    beadtypeFilter: no visible global function definition for ‘exprs’
    beadtypeFilter: no visible global function definition for ‘se.exprs’
    beadtypeFilter: no visible global function definition for ‘beadNum’
    beadtypeFilter: no visible global function definition for ‘fData’
    emCDF: no visible global function definition for ‘brewer.pal’
    emCDF: no visible global function definition for ‘plot’
    emCDF: no visible global function definition for ‘ecdf’
    emCDF: no visible global function definition for ‘legend’
    emCDF: no visible global function definition for ‘lines’
    emCDF: no visible global function definition for ‘text’
    emCDF: no visible global function definition for ‘reshape’
    iccFun : <anonymous>: no visible global function definition for
     ‘quantile’
    varianceplot: no visible global function definition for ‘reshape’
    varianceplot: no visible global function definition for ‘plot’
    varianceplot: no visible global function definition for ‘points’
    varianceplot: no visible global function definition for ‘legend’
    Undefined global functions or variables:
     beadNum brewer.pal ecdf exprs fData legend lines na.omit plot points
     quantile reshape se.exprs text
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.0
Check: Rd line widths
Result: NOTE
    Rd file 'iccFun.Rd':
     \examples lines wider than 100 characters:
     aaa<-na.omit(data.frame(I(rownames(exprs(exampleSummaryDataNorm))),exprs(exampleSummaryDataNorm)))[1:40,]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.0
Check: R code for possible problems
Result: NOTE
    beadtypeFilter: no visible global function definition for ‘exprs’
    beadtypeFilter: no visible global function definition for ‘se.exprs’
    beadtypeFilter: no visible global function definition for ‘beadNum’
    beadtypeFilter: no visible global function definition for ‘fData’
    emCDF: no visible global function definition for ‘brewer.pal’
    Undefined global functions or variables:
     beadNum brewer.pal exprs fData se.exprs
Flavor: r-devel-osx-x86_64-clang

Version: 1.1.0
Check: R code for possible problems
Result: NOTE
    beadtypeFilter: no visible global function definition for ‘exprs’
    beadtypeFilter: no visible global function definition for ‘se.exprs’
    beadtypeFilter: no visible global function definition for ‘beadNum’
    beadtypeFilter: no visible global function definition for ‘fData’
    emCDF: no visible global function definition for ‘brewer.pal’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘beadarrayExampleData’ ‘lumi’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘beadarrayFilter-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: MLM.beadarray
    > ### Title: Multi-level Mixed model
    > ### Aliases: MLM.beadarray
    > ### Keywords: differential expression
    >
    > ### ** Examples
    >
    > require(beadarrayExampleData)
    Loading required package: beadarrayExampleData
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘beadarrayExampleData’
    > data(exampleSummaryData)
    Warning in data(exampleSummaryData) :
     data set ‘exampleSummaryData’ not found
    > exampleSummaryDatalog2 <- channel(exampleSummaryData, "G")[1:40,]
    Error in channel(exampleSummaryData, "G") :
     error in evaluating the argument 'object' in selecting a method for function 'channel': Error: object 'exampleSummaryData' not found
    Execution halted
Flavor: r-release-osx-x86_64-mavericks