CRAN Package Check Results for Package beadarrayMSV

Last updated on 2015-07-02 03:46:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 7.54 84.57 92.11 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.0 7.18 82.57 89.76 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.0 189.06 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.0 173.41 NOTE
r-devel-osx-x86_64-clang 1.1.0 171.43 NOTE
r-devel-windows-ix86+x86_64 1.1.0 20.00 129.00 149.00 NOTE
r-patched-linux-x86_64 1.1.0 7.03 84.43 91.46 NOTE
r-release-linux-x86_64 1.1.0 7.27 84.18 91.45 NOTE
r-release-osx-x86_64-mavericks 1.1.0 ERROR
r-release-windows-ix86+x86_64 1.1.0 19.00 120.00 139.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.0 40.00 170.00 210.00 NOTE

Check Details

Version: 1.1.0
Check: installed package size
Result: NOTE
     installed size is 7.9Mb
     sub-directories of 1Mb or more:
     data 6.6Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: R code for possible problems
Result: NOTE
    assignParalogues: no visible global function definition for ‘quantile’
    callGenotypes: no visible global function definition for ‘median’
    callGenotypes: no visible global function definition for ‘quantile’
    callGenotypes: no visible binding for global variable ‘sd’
    callGenotypes: no visible binding for global variable ‘median’
    callGenotypes: no visible global function definition for ‘pf’
    callGenotypes: no visible global function definition for ‘plot.new’
    callGenotypes: no visible global function definition for ‘plot.window’
    callGenotypes: no visible global function definition for ‘axis’
    callGenotypes: no visible global function definition for ‘points’
    callGenotypes.interactive: no visible global function definition for
     ‘median’
    callGenotypes.interactive: no visible global function definition for
     ‘quantile’
    callGenotypes.interactive: no visible binding for global variable
     ‘median’
    callGenotypes.interactive: no visible binding for global variable ‘sd’
    callGenotypes.interactive: no visible global function definition for
     ‘pf’
    callGenotypes.verboseTest: no visible global function definition for
     ‘median’
    callGenotypes.verboseTest: no visible global function definition for
     ‘quantile’
    callGenotypes.verboseTest: no visible global function definition for
     ‘par’
    callGenotypes.verboseTest: no visible binding for global variable ‘sd’
    callGenotypes.verboseTest: no visible binding for global variable
     ‘median’
    callGenotypes.verboseTest: no visible global function definition for
     ‘pf’
    callGenotypes.verboseTest: no visible global function definition for
     ‘plot.new’
    callGenotypes.verboseTest: no visible global function definition for
     ‘plot.window’
    callGenotypes.verboseTest: no visible global function definition for
     ‘axis’
    callGenotypes.verboseTest: no visible global function definition for
     ‘title’
    callGenotypes.verboseTest: no visible global function definition for
     ‘points’
    createAlleleSetFromFiles: no visible global function definition for
     ‘read.table’
    createMultiSetFromFiles: no visible global function definition for
     ‘read.table’
    findClusters: no visible global function definition for ‘hist’
    findClusters: no visible global function definition for ‘embed’
    findPolyploidClusters: no visible global function definition for ‘hist’
    findPolyploidClusters: no visible global function definition for
     ‘median’
    findPolyploidClusters: no visible global function definition for
     ‘kmeans’
    findPolyploidClusters: no visible binding for global variable ‘median’
    findSeTheta: no visible global function definition for ‘integrate’
    getNoiseDistributions: no visible global function definition for ‘par’
    getNoiseDistributions: no visible binding for global variable ‘median’
    getNoiseDistributions: no visible binding for global variable ‘mad’
    getNoiseDistributions: no visible global function definition for ‘hist’
    getNoiseDistributions: no visible global function definition for
     ‘lines’
    getNoiseDistributions: no visible global function definition for
     ‘dnorm’
    normalizeIllumina: no visible global function definition for ‘quantile’
    normalizeIllumina: no visible global function definition for ‘coef’
    normalizeIllumina: no visible global function definition for ‘lm’
    normalizeIllumina: no visible global function definition for ‘points’
    normalizeIllumina: no visible global function definition for ‘par’
    normalizeIllumina: no visible global function definition for ‘plot.new’
    normalizeIllumina: no visible global function definition for
     ‘plot.window’
    normalizeIllumina: no visible global function definition for ‘axis’
    normalizeIllumina: no visible global function definition for ‘lines’
    normalizeShearedChannels: no visible binding for global variable
     ‘median’
    normalizeShearedChannels: no visible binding for global variable
     ‘quantile’
    plotCountsChrom: no visible global function definition for ‘par’
    plotCountsChrom: no visible global function definition for ‘plot.new’
    plotCountsChrom: no visible global function definition for
     ‘plot.window’
    plotCountsChrom: no visible global function definition for ‘axis’
    plotCountsChrom: no visible global function definition for ‘lines’
    plotCountsChrom: no visible global function definition for ‘title’
    plotEstimatedNoise: no visible global function definition for ‘par’
    plotEstimatedNoise: no visible global function definition for ‘plot’
    plotEstimatedNoise: no visible global function definition for ‘lines’
    plotEstimatedNoise: no visible global function definition for ‘points’
    plotGenotypes: no visible global function definition for ‘par’
    plotGenotypes: no visible global function definition for ‘palette’
    plotGenotypes: no visible global function definition for ‘plot.new’
    plotGenotypes: no visible global function definition for ‘plot.window’
    plotGenotypes: no visible global function definition for ‘axis’
    plotGenotypes: no visible global function definition for ‘points’
    plotGenotypes: no visible global function definition for ‘title’
    plotGenotypes: no visible global function definition for ‘lines’
    plotPreprocessing: no visible global function definition for ‘par’
    scatterArrays: no visible global function definition for ‘par’
    scatterArrays: no visible global function definition for
     ‘smoothScatter’
    scatterArrays: no visible global function definition for ‘plot’
    scatterArrays: no visible global function definition for ‘lines’
    shearRawSignal: no visible global function definition for ‘par’
    testHardyWeinberg: no visible global function definition for ‘pchisq’
    translateThetaFromFiles: no visible global function definition for
     ‘read.table’
    translateThetaFromFiles: no visible global function definition for
     ‘write.table’
    writeAlleleSet: no visible global function definition for ‘write.table’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘rggobi’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-mavericks