CRAN Package Check Results for Package beadarrayMSV

Last updated on 2014-10-21 01:47:09.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 9.48 109.71 119.19 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.0 9.10 106.54 115.65 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.0 265.36 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.0 270.15 NOTE
r-devel-osx-x86_64-clang 1.1.0 243.57 NOTE
r-devel-windows-ix86+x86_64 1.1.0 25.00 139.00 164.00 ERROR
r-patched-linux-x86_64 1.1.0 9.92 115.21 125.12 NOTE
r-release-linux-ix86 1.1.0 9.83 119.50 129.33 NOTE
r-release-linux-x86_64 1.1.0 8.35 98.64 107.00 NOTE
r-release-osx-x86_64-mavericks 1.1.0 ERROR
r-release-osx-x86_64-snowleopard 1.1.0 ERROR
r-release-windows-ix86+x86_64 1.1.0 23.00 137.00 160.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.0 24.00 129.00 153.00 NOTE

Check Details

Version: 1.1.0
Check: installed package size
Result: NOTE
     installed size is 7.9Mb
     sub-directories of 1Mb or more:
     data 6.6Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in 'beadarrayMSV-Ex.R' failed
    The error occurred in:
    
    
    R Under development (unstable) (2014-10-18 r66793) -- "Unsuffered Consequences"
    Copyright (C) 2014 The R Foundation for Statistical Computing
    Platform: x86_64-w64-mingw32/x64 (64-bit)
    
    R is free software and comes with ABSOLUTELY NO WARRANTY.
    You are welcome to redistribute it under certain conditions.
    Type 'license()' or 'licence()' for distribution details.
    
     Natural language support but running in an English locale
    
    R is a collaborative project with many contributors.
    Type 'contributors()' for more information and
    'citation()' on how to cite R or R packages in publications.
    
    Type 'demo()' for some demos, 'help()' for on-line help, or
    'help.start()' for an HTML browser interface to help.
    Type 'q()' to quit R.
    
    > pkgname <- "beadarrayMSV"
    > source(file.path(R.home("share"), "R", "examples-header.R"))
    > options(warn = 1)
    > options(pager = "console")
    > library('beadarrayMSV')
    Loading required package: Biobase
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following object is masked from 'package:stats':
    
     xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
     eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
     mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
     unique, unlist, unsplit
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required package: geneplotter
    Loading required package: lattice
    Loading required package: annotate
    Loading required package: AnnotationDbi
    Loading required package: stats4
    Loading required package: GenomeInfoDb
    Loading required package: S4Vectors
    Loading required package: IRanges
    
    Attaching package: 'AnnotationDbi'
    
    The following object is masked from 'package:GenomeInfoDb':
    
     species
    
    Loading required package: XML
    
    Attaching package: 'annotate'
    
    The following object is masked from 'package:GenomeInfoDb':
    
     organism
    
    >
    > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
    > cleanEx()
    Error in ls(envir = env, all.names = TRUE) :
     2 arguments passed to .Internal(ls) which requires 3
    Calls: cleanEx -> rm -> ls -> ls
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘rggobi’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard