CRAN Package Check Results for Package biganalytics

Last updated on 2014-04-24 09:48:57.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.1 4.16 19.40 23.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.1 5.78 20.32 26.10 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.1 49.96 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.1 48.56 NOTE
r-devel-osx-x86_64-clang 1.1.1 43.35 NOTE
r-devel-osx-x86_64-gcc 1.1.1 NOTE
r-patched-linux-x86_64 1.1.1 5.86 19.71 25.57 NOTE
r-patched-solaris-sparc 1.1.1 285.50 NOTE
r-patched-solaris-x86 1.1.1 66.80 NOTE
r-release-linux-ix86 1.1.1 10.00 38.00 48.00 NOTE
r-release-linux-x86_64 1.1.1 5.85 19.51 25.36 NOTE
r-release-osx-x86_64-mavericks 1.1.1 ERROR
r-oldrel-windows-ix86+x86_64 1.0.14 22.00 51.00 73.00 ERROR

Memtest notes: UBSAN

Check Details

Version: 1.1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘bigmemory’ which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘foreach’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1.1
Check: R code for possible problems
Result: NOTE
    bigkmeans: no visible global function definition for ‘getDoParName’
    bigkmeans: no visible global function definition for ‘registerDoSEQ’
    bigkmeans: no visible global function definition for ‘getDoParWorkers’
    bigkmeans: no visible global function definition for ‘%dopar%’
    bigkmeans: no visible global function definition for ‘foreach’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘foreach’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1.1
Check: examples
Result: ERROR
    Running examples in ‘biganalytics-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: bigkmeans
    > ### Title: The Bigmemory Project's memory-efficient k-means cluster
    > ### analysis
    > ### Aliases: bigkmeans
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    > # Simple example (with one processor):
    >
    > library(bigmemory)
    >
    > x <- big.matrix(100000, 3, init=0, type="double")
    > x[seq(1,100000,by=2),] <- rnorm(150000)
    > x[seq(2,100000,by=2),] <- rnorm(150000, 5, 1)
    > head(x)
     [,1] [,2] [,3]
    [1,] -0.6264538 0.5258908 0.7914415
    [2,] 3.7479848 4.7759979 5.2414635
    [3,] 0.1836433 -0.4875444 0.3921679
    [4,] 4.6648687 4.1960996 4.5929311
    [5,] -0.8356286 1.1382508 -0.4726670
    [6,] 5.1080678 6.1393495 5.0131172
    > ans <- bigkmeans(x, 1) # One cluster isn't always allowed
    Loading required package: foreach
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘foreach’
    Error in bigkmeans(x, 1) : could not find function "getDoParName"
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.14
Check: running examples for arch 'i386'
Result: ERROR
    Running examples in 'biganalytics-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: biganalytics-package
    > ### Title: biganalytics: A library of utilities for big.matrix objects of
    > ### package bigmemory. Some work with R matrices, independently of
    > ### bigmemory.
    > ### Aliases: biganalytics-package biganalytics
    > ### Keywords: package
    >
    > ### ** Examples
    >
    > # Our examples are all trivial in size, rather than burning huge amounts
    > # of memory simply to demonstrate the package functionality.
    >
    > library(bigmemory)
    >
    > x <- big.matrix(5, 2, type="integer", init=0,
    + dimnames=list(NULL, c("alpha", "beta")))
    > x
    An object of class "big.matrix"
    Slot "address":
    <pointer: 0x0003b0f0>
    
    > x[,]
     alpha beta
    [1,] 0 0
    [2,] 0 0
    [3,] 0 0
    [4,] 0 0
    [5,] 0 0
    > x[,1] <- 1:5
    > x[,]
     alpha beta
    [1,] 1 0
    [2,] 2 0
    [3,] 3 0
    [4,] 4 0
    [5,] 5 0
    > mean(x)
    Error in mean(colmean(x, ...)) :
     error in evaluating the argument 'x' in selecting a method for function 'mean': Error in .Call("CGetType", x@address) :
     "CGetType" not resolved from current namespace (biganalytics)
    Calls: colmean -> colmean -> .Call
    Calls: mean -> mean -> mean
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.0.14
Check: running examples for arch 'x64'
Result: ERROR
    Running examples in 'biganalytics-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: biganalytics-package
    > ### Title: biganalytics: A library of utilities for big.matrix objects of
    > ### package bigmemory. Some work with R matrices, independently of
    > ### bigmemory.
    > ### Aliases: biganalytics-package biganalytics
    > ### Keywords: package
    >
    > ### ** Examples
    >
    > # Our examples are all trivial in size, rather than burning huge amounts
    > # of memory simply to demonstrate the package functionality.
    >
    > library(bigmemory)
    >
    > x <- big.matrix(5, 2, type="integer", init=0,
    + dimnames=list(NULL, c("alpha", "beta")))
    > x
    An object of class "big.matrix"
    Slot "address":
    <pointer: 0x00000000000aec40>
    
    > x[,]
     alpha beta
    [1,] 0 0
    [2,] 0 0
    [3,] 0 0
    [4,] 0 0
    [5,] 0 0
    > x[,1] <- 1:5
    > x[,]
     alpha beta
    [1,] 1 0
    [2,] 2 0
    [3,] 3 0
    [4,] 4 0
    [5,] 5 0
    > mean(x)
    Error in mean(colmean(x, ...)) :
     error in evaluating the argument 'x' in selecting a method for function 'mean': Error in .Call("CGetType", x@address) :
     "CGetType" not resolved from current namespace (biganalytics)
    Calls: colmean -> colmean -> .Call
    Calls: mean -> mean -> mean
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64