CRAN Package Check Results for Package bio.infer

Last updated on 2015-07-30 22:49:43.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3-3 1.16 21.94 23.10 NOTE
r-devel-linux-x86_64-debian-gcc 1.3-3 1.08 22.12 23.20 NOTE
r-devel-linux-x86_64-fedora-clang 1.3-3 43.61 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3-3 42.31 NOTE
r-devel-osx-x86_64-clang 1.3-3 43.00 OK
r-devel-windows-ix86+x86_64 1.3-3 5.00 33.00 38.00 NOTE
r-patched-linux-x86_64 1.3-3 1.04 22.02 23.07 OK
r-patched-solaris-sparc 1.3-3 305.50 OK
r-patched-solaris-x86 1.3-3 65.20 OK
r-release-linux-x86_64 1.3-3 1.06 22.10 23.15 OK
r-release-osx-x86_64-mavericks 1.3-3 OK
r-release-windows-ix86+x86_64 1.3-3 4.00 34.00 38.00 OK
r-oldrel-windows-ix86+x86_64 1.3-3 5.00 38.00 43.00 OK

Check Details

Version: 1.3-3
Check: R code for possible problems
Result: NOTE
    correct.taxanames: no visible global function definition for ‘fix’
    correct.taxanames: no visible global function definition for
     ‘flush.console’
    flist.data: no visible global function definition for ‘data’
    formtomat: no visible global function definition for ‘D’
    get.dupe.sel: no visible global function definition for ‘select.list’
    get.dupe.sel: no visible global function definition for ‘flush.console’
    get.otu: no visible global function definition for ‘select.list’
    get.otu: no visible global function definition for ‘write.table’
    infergui : getfile: no visible global function definition for
     ‘read.delim’
    infergui : select.te: no visible global function definition for ‘data’
    infergui : compute.inf: no visible global function definition for
     ‘flush.console’
    infergui : export.res: no visible global function definition for
     ‘write.table’
    load.itis: no visible global function definition for ‘data’
    load.itis: no visible binding for global variable ‘itis.ttable’
    load.revised.otu: no visible global function definition for
     ‘read.delim’
    load.revised.species: no visible global function definition for
     ‘read.delim’
    makess: no visible global function definition for ‘flush.console’
    makess: no visible global function definition for ‘dev.new’
    makess: no visible global function definition for ‘hist’
    mlsolve: no visible global function definition for ‘par’
    mlsolve: no visible global function definition for ‘contour’
    mlsolve: no visible global function definition for ‘box’
    mlsolve: no visible global function definition for ‘axis’
    mlsolve: no visible global function definition for ‘mtext’
    mlsolve: no visible global function definition for ‘plot’
    mlsolve: no visible global function definition for ‘optim’
    mlsolve: no visible global function definition for ‘points’
    output.tax.table: no visible global function definition for
     ‘write.table’
    sel.coeffile: no visible global function definition for ‘data’
    taxon.env: no visible global function definition for ‘na.omit’
    taxon.env: no visible global function definition for ‘glm’
    taxon.env: no visible global function definition for ‘as.formula’
    taxon.env: no visible global function definition for ‘predict’
    taxon.env: no visible global function definition for ‘coef’
    view.te: no visible global function definition for ‘pdf’
    view.te: no visible global function definition for ‘par’
    view.te: no visible global function definition for ‘dev.new’
    view.te: no visible global function definition for ‘contour’
    view.te: no visible global function definition for ‘box’
    view.te: no visible global function definition for ‘axis’
    view.te: no visible global function definition for ‘mtext’
    view.te: no visible global function definition for ‘quantile’
    view.te: no visible global function definition for ‘plot’
    view.te: no visible global function definition for ‘points’
    view.te: no visible global function definition for ‘dev.off’
    Undefined global functions or variables:
     D as.formula axis box coef contour data dev.new dev.off fix
     flush.console glm hist itis.ttable mtext na.omit optim par pdf plot
     points predict quantile read.delim select.list write.table
    Consider adding
     importFrom("grDevices", "dev.new", "dev.off", "pdf")
     importFrom("graphics", "axis", "box", "contour", "hist", "mtext",
     "par", "plot", "points")
     importFrom("stats", "D", "as.formula", "coef", "glm", "na.omit",
     "optim", "predict", "quantile")
     importFrom("utils", "data", "fix", "flush.console", "read.delim",
     "select.list", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64