CRAN Package Check Results for Package bios2mds

Last updated on 2015-08-02 17:47:37.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.2 1.45 38.11 39.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.2 1.44 36.69 38.13 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.2 81.10 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.2 78.71 NOTE
r-devel-osx-x86_64-clang 1.2.2 58.25 NOTE
r-devel-windows-ix86+x86_64 1.2.2 5.00 61.00 66.00 NOTE
r-patched-linux-x86_64 1.2.2 1.88 37.44 39.32 NOTE
r-patched-solaris-sparc 1.2.2 504.00 NOTE
r-patched-solaris-x86 1.2.2 123.10 NOTE
r-release-linux-x86_64 1.2.2 1.39 36.64 38.02 NOTE
r-release-osx-x86_64-mavericks 1.2.2 NOTE
r-release-windows-ix86+x86_64 1.2.2 8.00 63.00 71.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2.2 11.00 74.00 85.00 NOTE

Check Details

Version: 1.2.2
Check: R code for possible problems
Result: NOTE
    col.group: no visible global function definition for ‘read.table’
    dif: no visible global function definition for ‘complete.cases’
    dis: no visible global function definition for ‘data’
    dis: no visible binding for global variable ‘sub.mat’
    dis : Sij: no visible global function definition for ‘na.omit’
    dis : Tij: no visible global function definition for ‘na.omit’
    dis: no visible global function definition for ‘complete.cases’
    mat.dis: no visible global function definition for ‘data’
    mat.dis: no visible binding for global variable ‘sub.mat’
    mmds.2D.multi: no visible global function definition for ‘dev.new’
    mmds.2D.multi: no visible global function definition for ‘pdf’
    mmds.2D.multi: no visible global function definition for ‘png’
    mmds.2D.multi: no visible global function definition for ‘tiff’
    mmds.2D.multi: no visible global function definition for ‘postscript’
    mmds.2D.multi: no visible global function definition for ‘plot’
    mmds.2D.multi : <anonymous>: no visible global function definition for
     ‘points’
    mmds.2D.multi : <anonymous>: no visible global function definition for
     ‘lines’
    mmds.2D.multi: no visible global function definition for ‘abline’
    mmds.2D.multi: no visible global function definition for ‘box’
    mmds.2D.multi: no visible global function definition for ‘dev.off’
    mmds.2D.plot: no visible global function definition for ‘dev.new’
    mmds.2D.plot: no visible global function definition for ‘pdf’
    mmds.2D.plot: no visible global function definition for ‘png’
    mmds.2D.plot: no visible global function definition for ‘tiff’
    mmds.2D.plot: no visible global function definition for ‘postscript’
    mmds.2D.plot: no visible global function definition for ‘plot’
    mmds.2D.plot: no visible global function definition for ‘text’
    mmds.2D.plot: no visible global function definition for ‘points’
    mmds.2D.plot: no visible global function definition for ‘abline’
    mmds.2D.plot: no visible global function definition for ‘box’
    mmds.2D.plot: no visible global function definition for ‘dev.off’
    mmds.3D.plot: no visible global function definition for ‘box3d’
    mmds.3D.plot: no visible global function definition for ‘axes3d’
    mmds.plot: no visible global function definition for ‘dev.new’
    mmds.plot: no visible global function definition for ‘pdf’
    mmds.plot: no visible global function definition for ‘layout’
    mmds.plot: no visible global function definition for ‘dev.off’
    scree.plot: no visible global function definition for ‘dev.new’
    scree.plot: no visible global function definition for ‘pdf’
    scree.plot: no visible global function definition for ‘barplot’
    scree.plot: no visible global function definition for ‘text’
    scree.plot: no visible global function definition for ‘dev.off’
    sil.score: no visible global function definition for ‘dist’
    write.mmds.pdb: no visible global function definition for ‘col2rgb’
    Undefined global functions or variables:
     abline axes3d barplot box box3d col2rgb complete.cases data dev.new
     dev.off dist layout lines na.omit pdf plot png points postscript
     read.table sub.mat text tiff
    Consider adding
     importFrom("grDevices", "col2rgb", "dev.new", "dev.off", "pdf", "png",
     "postscript", "tiff")
     importFrom("graphics", "abline", "barplot", "box", "layout", "lines",
     "plot", "points", "text")
     importFrom("stats", "complete.cases", "dist", "na.omit")
     importFrom("utils", "data", "read.table")
    to your NAMESPACE.
    
    Found the following calls to data() loading into the global environment:
    File ‘bios2mds/R/dis.R’:
     data("sub.mat", package = "bios2mds", verbose = FALSE)
    File ‘bios2mds/R/mat.dis.R’:
     data("sub.mat", package = "bios2mds", verbose = FALSE)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang

Version: 1.2.2
Check: R code for possible problems
Result: NOTE
    col.group: no visible global function definition for ‘read.table’
    dif: no visible global function definition for ‘complete.cases’
    dis: no visible global function definition for ‘data’
    dis: no visible binding for global variable ‘sub.mat’
    dis : Sij: no visible global function definition for ‘na.omit’
    dis : Tij: no visible global function definition for ‘na.omit’
    dis: no visible global function definition for ‘complete.cases’
    mat.dis: no visible global function definition for ‘data’
    mat.dis: no visible binding for global variable ‘sub.mat’
    mmds.2D.multi: no visible global function definition for ‘dev.new’
    mmds.2D.multi: no visible global function definition for ‘pdf’
    mmds.2D.multi: no visible global function definition for ‘png’
    mmds.2D.multi: no visible global function definition for ‘tiff’
    mmds.2D.multi: no visible global function definition for ‘postscript’
    mmds.2D.multi: no visible global function definition for ‘plot’
    mmds.2D.multi : <anonymous>: no visible global function definition for
     ‘points’
    mmds.2D.multi : <anonymous>: no visible global function definition for
     ‘lines’
    mmds.2D.multi: no visible global function definition for ‘abline’
    mmds.2D.multi: no visible global function definition for ‘box’
    mmds.2D.multi: no visible global function definition for ‘dev.off’
    mmds.2D.plot: no visible global function definition for ‘dev.new’
    mmds.2D.plot: no visible global function definition for ‘pdf’
    mmds.2D.plot: no visible global function definition for ‘png’
    mmds.2D.plot: no visible global function definition for ‘tiff’
    mmds.2D.plot: no visible global function definition for ‘postscript’
    mmds.2D.plot: no visible global function definition for ‘plot’
    mmds.2D.plot: no visible global function definition for ‘text’
    mmds.2D.plot: no visible global function definition for ‘points’
    mmds.2D.plot: no visible global function definition for ‘abline’
    mmds.2D.plot: no visible global function definition for ‘box’
    mmds.2D.plot: no visible global function definition for ‘dev.off’
    mmds.3D.plot: no visible global function definition for ‘box3d’
    mmds.3D.plot: no visible global function definition for ‘axes3d’
    mmds.plot: no visible global function definition for ‘dev.new’
    mmds.plot: no visible global function definition for ‘pdf’
    mmds.plot: no visible global function definition for ‘layout’
    mmds.plot: no visible global function definition for ‘dev.off’
    scree.plot: no visible global function definition for ‘dev.new’
    scree.plot: no visible global function definition for ‘pdf’
    scree.plot: no visible global function definition for ‘barplot’
    scree.plot: no visible global function definition for ‘text’
    scree.plot: no visible global function definition for ‘dev.off’
    sil.score: no visible global function definition for ‘dist’
    write.mmds.pdb: no visible global function definition for ‘col2rgb’
    Undefined global functions or variables:
     abline axes3d barplot box box3d col2rgb complete.cases data dev.new
     dev.off dist layout lines na.omit pdf plot png points postscript
     read.table sub.mat text tiff
    Consider adding
     importFrom("grDevices", "col2rgb", "dev.new", "dev.off", "pdf", "png",
     "postscript", "tiff")
     importFrom("graphics", "abline", "barplot", "box", "layout", "lines",
     "plot", "points", "text")
     importFrom("stats", "complete.cases", "dist", "na.omit")
     importFrom("utils", "data", "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.2.2
Check: R code for possible problems
Result: NOTE
    dis: no visible binding for global variable ‘sub.mat’
    mat.dis: no visible binding for global variable ‘sub.mat’
    mmds.3D.plot: no visible global function definition for ‘box3d’
    mmds.3D.plot: no visible global function definition for ‘axes3d’
    Undefined global functions or variables:
     axes3d box3d sub.mat
    
    Found the following calls to data() loading into the global environment:
    File ‘bios2mds/R/dis.R’:
     data("sub.mat", package = "bios2mds", verbose = FALSE)
    File ‘bios2mds/R/mat.dis.R’:
     data("sub.mat", package = "bios2mds", verbose = FALSE)
    See section ‘Good practice’ in ‘?data’.
Flavor: r-devel-osx-x86_64-clang

Version: 1.2.2
Check: R code for possible problems
Result: NOTE
    dis: no visible binding for global variable ‘sub.mat’
    mat.dis: no visible binding for global variable ‘sub.mat’
    mmds.3D.plot: no visible global function definition for ‘box3d’
    mmds.3D.plot: no visible global function definition for ‘axes3d’
    
    Found the following calls to data() loading into the global environment:
    File ‘bios2mds/R/dis.R’:
     data("sub.mat", package = "bios2mds", verbose = FALSE)
    File ‘bios2mds/R/mat.dis.R’:
     data("sub.mat", package = "bios2mds", verbose = FALSE)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: R code for possible problems
Result: NOTE
    dis: no visible binding for global variable ‘sub.mat’
    mat.dis: no visible binding for global variable ‘sub.mat’
    mmds.3D.plot: no visible global function definition for ‘box3d’
    mmds.3D.plot: no visible global function definition for ‘axes3d’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64