CRAN Package Check Results for Package bipartite

Last updated on 2015-07-31 22:49:21.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.05 7.67 76.12 83.78 NOTE
r-devel-linux-x86_64-debian-gcc 2.05 8.22 75.07 83.29 NOTE
r-devel-linux-x86_64-fedora-clang 2.05 176.54 NOTE
r-devel-linux-x86_64-fedora-gcc 2.05 170.84 NOTE
r-devel-osx-x86_64-clang 2.05 106.54 NOTE
r-devel-windows-ix86+x86_64 2.05 39.00 128.00 167.00 NOTE
r-patched-linux-x86_64 2.05 8.44 75.34 83.78 NOTE
r-patched-solaris-sparc 2.05 890.20 NOTE
r-patched-solaris-x86 2.05 202.70 NOTE
r-release-linux-x86_64 2.05 9.74 74.30 84.04 NOTE
r-release-osx-x86_64-mavericks 2.05 NOTE
r-release-windows-ix86+x86_64 2.05 40.00 142.00 182.00 NOTE
r-oldrel-windows-ix86+x86_64 2.05 36.00 218.00 254.00 OK

Check Details

Version: 2.05
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.05
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.wine
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.05
Check: R code for possible problems
Result: NOTE
    .networklevel: no visible binding for global variable ‘median’
    .networklevel: no visible global function definition for ‘par’
    czvalues : zvalues: no visible global function definition for ‘sd’
    degreedistr : fitdd: no visible global function definition for ‘nls’
    degreedistr : fitdd: no visible global function definition for ‘coef’
    degreedistr: no visible global function definition for ‘nls.control’
    degreedistr : plotfit: no visible global function definition for ‘plot’
    degreedistr : plotfit: no visible global function definition for
     ‘abline’
    degreedistr : plotfit: no visible global function definition for
     ‘lines’
    degreedistr : plotfit: no visible global function definition for
     ‘predict’
    degreedistr: no visible global function definition for ‘par’
    degreedistr : <anonymous>: no visible global function definition for
     ‘cor’
    degreedistr : <anonymous>: no visible global function definition for
     ‘predict’
    degreedistr : <anonymous>: no visible global function definition for
     ‘AIC’
    degreedistr : <anonymous>: no visible global function definition for
     ‘coef’
    drawModules: no visible global function definition for ‘rect’
    fc: no visible global function definition for ‘hclust’
    genweb: no visible global function definition for ‘dlnorm’
    genweb: no visible global function definition for ‘r2dtable’
    mgen: no visible global function definition for ‘runif’
    nestedcontribution : <anonymous>: no visible global function definition
     for ‘rbinom’
    nestedcontribution: no visible global function definition for ‘sd’
    networklevel: no visible binding for global variable ‘median’
    nodespec : meanwithoutself: no visible global function definition for
     ‘weighted.mean’
    null.distr : null.lnorm.one : lmeansd: no visible global function
     definition for ‘sd’
    null.distr : null.lnorm.one: no visible global function definition for
     ‘rlnorm’
    null.distr : null.lnorm.one: no visible global function definition for
     ‘rnbinom’
    null.t.test: no visible global function definition for ‘r2dtable’
    null.t.test: no visible global function definition for ‘t.test’
    null.t.test: no visible binding for global variable ‘na.omit’
    nullmodel: no visible global function definition for ‘r2dtable’
    one.grouplevel: no visible global function definition for
     ‘weighted.mean’
    plot.wine: no visible global function definition for ‘abline’
    plot.wine: no visible global function definition for ‘axis’
    plotModuleWeb: no visible global function definition for ‘strwidth’
    plotModuleWeb: no visible global function definition for ‘par’
    plotModuleWeb: no visible global function definition for ‘plot’
    plotModuleWeb: no visible global function definition for ‘axis’
    plotModuleWeb: no visible global function definition for ‘rgb’
    plotModuleWeb: no visible global function definition for ‘rect’
    plotPAC: no visible global function definition for ‘rgb’
    plotPAC: no visible global function definition for ‘par’
    plotPAC: no visible global function definition for ‘plot’
    plotPAC: no visible global function definition for ‘points’
    plotPAC: no visible global function definition for ‘polygon’
    plotPAC: no visible global function definition for ‘symbols’
    plotweb: no visible global function definition for ‘par’
    plotweb: no visible global function definition for ‘plot’
    plotweb: no visible global function definition for ‘strheight’
    plotweb: no visible global function definition for ‘rect’
    plotweb: no visible global function definition for ‘strwidth’
    plotweb: no visible global function definition for ‘text’
    plotweb: no visible global function definition for ‘polygon’
    plotweb2: no visible global function definition for ‘par’
    plotweb2: no visible global function definition for ‘plot’
    plotweb2: no visible global function definition for ‘strheight’
    plotweb2: no visible global function definition for ‘rect’
    plotweb2: no visible global function definition for ‘strwidth’
    plotweb2: no visible global function definition for ‘text’
    plotweb2: no visible global function definition for ‘polygon’
    r2dexternal: no visible global function definition for ‘r2dtable’
    readModuleData: no visible global function definition for ‘read.table’
    robustness: no visible global function definition for ‘splinefun’
    robustness: no visible global function definition for ‘integrate’
    slope.bipartite: no visible global function definition for ‘nls’
    slope.bipartite: no visible global function definition for ‘par’
    slope.bipartite: no visible global function definition for ‘plot’
    slope.bipartite: no visible global function definition for ‘legend’
    slope.bipartite: no visible global function definition for ‘abline’
    slope.bipartite: no visible global function definition for ‘points’
    slope.bipartite: no visible global function definition for ‘lines’
    slope.bipartite: no visible global function definition for ‘predict’
    slope.bipartite: no visible global function definition for ‘coef’
    swap.web : downswap: no visible global function definition for
     ‘r2dtable’
    swap.web : nullmaker: no visible global function definition for
     ‘r2dtable’
    versionlog: no visible global function definition for ‘help’
    visweb: no visible global function definition for ‘strwidth’
    visweb: no visible global function definition for ‘par’
    visweb: no visible global function definition for ‘plot’
    visweb: no visible global function definition for ‘rect’
    visweb: no visible global function definition for ‘axis’
    visweb: no visible global function definition for ‘gray’
    visweb: no visible global function definition for ‘points’
    web2edges: no visible global function definition for ‘write.table’
    wine: no visible global function definition for ‘sd’
    wine: no visible global function definition for ‘pnorm’
    Undefined global functions or variables:
     AIC abline axis coef cor dlnorm gray hclust help integrate legend
     lines median na.omit nls nls.control par plot pnorm points polygon
     predict r2dtable rbinom read.table rect rgb rlnorm rnbinom runif sd
     splinefun strheight strwidth symbols t.test text weighted.mean
     write.table
    Consider adding
     importFrom("grDevices", "gray", "rgb")
     importFrom("graphics", "abline", "axis", "legend", "lines", "par",
     "plot", "points", "polygon", "rect", "strheight",
     "strwidth", "symbols", "text")
     importFrom("stats", "AIC", "coef", "cor", "dlnorm", "hclust",
     "integrate", "median", "na.omit", "nls", "nls.control",
     "pnorm", "predict", "r2dtable", "rbinom", "rlnorm",
     "rnbinom", "runif", "sd", "splinefun", "t.test",
     "weighted.mean")
     importFrom("utils", "help", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64