CRAN Package Check Results for Package blockmodeling

Last updated on 2017-03-29 23:52:55.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.8 6.54 35.39 41.93 WARN
r-devel-linux-x86_64-debian-gcc 0.1.8 6.21 33.53 39.74 WARN
r-devel-linux-x86_64-fedora-clang 0.1.8 74.13 WARN --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.1.8 69.37 WARN --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.1.8 58.95 WARN --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.1.8 28.00 76.00 104.00 NOTE
r-patched-linux-x86_64 0.1.8 6.47 33.32 39.79 NOTE
r-patched-solaris-sparc 0.1.8 452.10 NOTE
r-patched-solaris-x86 0.1.8 101.80 NOTE
r-release-linux-x86_64 0.1.8 6.48 30.67 37.15 NOTE
r-release-osx-x86_64-mavericks 0.1.8 WARN
r-release-windows-ix86+x86_64 0.1.8 51.00 102.00 153.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1.8 48.00 83.00 131.00 NOTE

Check Details

Version: 0.1.8
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: GNU Extension: Different type kinds at (1)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.8
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘Matrix’ ‘sna’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.1.8
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.mat.nm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.1.8
Check: R code for possible problems
Result: NOTE
    gplot1: warning in grep(pat = "block", search()): partial argument
     match of ‘pat’ to ‘pattern’
    gplot2: warning in grep(pat = "block", search()): partial argument
     match of ‘pat’ to ‘pattern’
    loadnetwork2: warning in grep(patt = "^ *$", x = as.character(line)):
     partial argument match of ‘patt’ to ‘pattern’
    loadpajek: warning in grep(patt = "^ *$", x = as.character(line)):
     partial argument match of ‘patt’ to ‘pattern’
    savecluster: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of ‘patt’ to ‘pattern’
    savematrix: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of ‘patt’ to ‘pattern’
    savenetwork: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of ‘patt’ to ‘pattern’
    savepajek: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of ‘patt’ to ‘pattern’
    savevector: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of ‘patt’ to ‘pattern’
    ad: no visible global function definition for ‘median’
    check.these.par: no visible global function definition for
     ‘crit.fun.tmp’
    check.these.par: no visible binding for global variable ‘useM’
    crit.fun: no visible global function definition for ‘crit.fun.tmp’
    crit.fun: no visible binding for global variable ‘useM’
    find.m: no visible global function definition for ‘optimize’
    gen.crit.fun: no visible global function definition for ‘na.omit’
    gen.crit.fun: no visible binding for global variable ‘s’
    genRandomPar: no visible global function definition for ‘runif’
    genRandomParGroups: no visible global function definition for ‘runif’
    gplot1: no visible global function definition for ‘gray’
    gplot1: no visible global function definition for ‘gplot’
    gplot2: no visible global function definition for ‘gray’
    gplot2: no visible global function definition for ‘gplot’
    loadmatrix: no visible global function definition for ‘read.table’
    loadnetwork: no visible global function definition for ‘read.table’
    loadnetwork: no visible global function definition for ‘Matrix’
    loadnetwork2: no visible global function definition for ‘read.table’
    loadnetwork2: no visible global function definition for ‘Matrix’
    loadvector: no visible global function definition for ‘read.table’
    loadvector2: no visible global function definition for ‘read.table’
    opt.par: no visible global function definition for ‘opt.par.tmp’
    opt.random.par: no visible global function definition for ‘na.omit’
    opt.random.par: no visible global function definition for ‘opt.par.tmp’
    opt.these.par: no visible global function definition for ‘opt.par.tmp’
    opt.these.par: no visible binding for global variable ‘m’
    plot.mat: no visible global function definition for ‘par’
    plot.mat: no visible global function definition for ‘grey’
    plot.mat: no visible global function definition for ‘plot.default’
    plot.mat: no visible global function definition for ‘rect’
    plot.mat: no visible global function definition for ‘segments’
    plot.mat: no visible global function definition for ‘text’
    plot.mat: no visible global function definition for ‘title’
    plot.mat: no visible global function definition for ‘mtext’
    plot.mat: no visible global function definition for ‘gray’
    plot.mat.nm: no visible binding for global variable ‘par’
    plot.mat.nm: no visible global function definition for ‘par’
    plot.mat.nm: no visible global function definition for ‘title’
    savematrix: no visible global function definition for ‘write.table’
    savenetwork: no visible global function definition for ‘as’
    savenetwork: no visible global function definition for ‘write.table’
    sedist: no visible global function definition for ‘as.dist’
    Undefined global functions or variables:
     Matrix as as.dist crit.fun.tmp gplot gray grey m median mtext na.omit
     opt.par.tmp optimize par plot.default read.table rect runif s
     segments text title useM write.table
    Consider adding
     importFrom("grDevices", "gray", "grey")
     importFrom("graphics", "mtext", "par", "plot.default", "rect",
     "segments", "text", "title")
     importFrom("methods", "as")
     importFrom("stats", "as.dist", "median", "na.omit", "optimize",
     "runif")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.1.8
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.mat':
     ‘plot.mat’ ‘plot.mat.nm’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.8
Check: compiled code
Result: NOTE
    File ‘blockmodeling/libs/blockmodeling.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.1.8
Flags: --no-stop-on-test-error
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: GNU Extension: Different type kinds at (1)
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1.8
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘Matrix’ ‘sna’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Namespace in Imports field not imported from: ‘stats’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1.8
Flags: --no-stop-on-test-error
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.mat.nm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1.8
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    gplot1: warning in grep(pat = "block", search()): partial argument
     match of 'pat' to 'pattern'
    gplot2: warning in grep(pat = "block", search()): partial argument
     match of 'pat' to 'pattern'
    loadnetwork2: warning in grep(patt = "^ *$", x = as.character(line)):
     partial argument match of 'patt' to 'pattern'
    loadpajek: warning in grep(patt = "^ *$", x = as.character(line)):
     partial argument match of 'patt' to 'pattern'
    savecluster: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    savematrix: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    savenetwork: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    savepajek: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    savevector: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    ad: no visible global function definition for ‘median’
    check.these.par: no visible global function definition for
     ‘crit.fun.tmp’
    check.these.par: no visible binding for global variable ‘useM’
    crit.fun: no visible global function definition for ‘crit.fun.tmp’
    crit.fun: no visible binding for global variable ‘useM’
    find.m: no visible global function definition for ‘optimize’
    gen.crit.fun: no visible global function definition for ‘na.omit’
    gen.crit.fun: no visible binding for global variable ‘s’
    genRandomPar: no visible global function definition for ‘runif’
    genRandomParGroups: no visible global function definition for ‘runif’
    gplot1: no visible global function definition for ‘gray’
    gplot1: no visible global function definition for ‘gplot’
    gplot2: no visible global function definition for ‘gray’
    gplot2: no visible global function definition for ‘gplot’
    loadmatrix: no visible global function definition for ‘read.table’
    loadnetwork: no visible global function definition for ‘read.table’
    loadnetwork: no visible global function definition for ‘Matrix’
    loadnetwork2: no visible global function definition for ‘read.table’
    loadnetwork2: no visible global function definition for ‘Matrix’
    loadvector: no visible global function definition for ‘read.table’
    loadvector2: no visible global function definition for ‘read.table’
    opt.par: no visible global function definition for ‘opt.par.tmp’
    opt.random.par: no visible global function definition for ‘na.omit’
    opt.random.par: no visible global function definition for ‘opt.par.tmp’
    opt.these.par: no visible global function definition for ‘opt.par.tmp’
    opt.these.par: no visible binding for global variable ‘m’
    plot.mat: no visible global function definition for ‘par’
    plot.mat: no visible global function definition for ‘grey’
    plot.mat: no visible global function definition for ‘plot.default’
    plot.mat: no visible global function definition for ‘rect’
    plot.mat: no visible global function definition for ‘segments’
    plot.mat: no visible global function definition for ‘text’
    plot.mat: no visible global function definition for ‘title’
    plot.mat: no visible global function definition for ‘mtext’
    plot.mat: no visible global function definition for ‘gray’
    plot.mat.nm: no visible binding for global variable ‘par’
    plot.mat.nm: no visible global function definition for ‘par’
    plot.mat.nm: no visible global function definition for ‘title’
    savematrix: no visible global function definition for ‘write.table’
    savenetwork: no visible global function definition for ‘as’
    savenetwork: no visible global function definition for ‘write.table’
    sedist: no visible global function definition for ‘as.dist’
    Undefined global functions or variables:
     Matrix as as.dist crit.fun.tmp gplot gray grey m median mtext na.omit
     opt.par.tmp optimize par plot.default read.table rect runif s
     segments text title useM write.table
    Consider adding
     importFrom("grDevices", "gray", "grey")
     importFrom("graphics", "mtext", "par", "plot.default", "rect",
     "segments", "text", "title")
     importFrom("methods", "as")
     importFrom("stats", "as.dist", "median", "na.omit", "optimize",
     "runif")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1.8
Flags: --no-stop-on-test-error
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.mat':
     ‘plot.mat’ ‘plot.mat.nm’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1.8
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘blockmodeling/libs/blockmodeling.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1.8
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘Matrix’ ‘sna’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Namespace in Imports field not imported from: ‘stats’
     All declared Imports should be used.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-oldrel-windows-ix86+x86_64

Version: 0.1.8
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
Flavor: r-release-osx-x86_64-mavericks

Version: 0.1.8
Check: R code for possible problems
Result: NOTE
    gplot1: warning in grep(pat = "block", search()): partial argument
     match of 'pat' to 'pattern'
    gplot2: warning in grep(pat = "block", search()): partial argument
     match of 'pat' to 'pattern'
    loadnetwork2: warning in grep(patt = "^ *$", x = as.character(line)):
     partial argument match of 'patt' to 'pattern'
    loadpajek: warning in grep(patt = "^ *$", x = as.character(line)):
     partial argument match of 'patt' to 'pattern'
    savecluster: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    savematrix: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    savenetwork: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    savepajek: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    savevector: warning in grep(patt = "w32", x = version["os"]): partial
     argument match of 'patt' to 'pattern'
    check.these.par: no visible global function definition for
     'crit.fun.tmp'
    check.these.par: no visible binding for global variable 'useM'
    crit.fun: no visible global function definition for 'crit.fun.tmp'
    crit.fun: no visible binding for global variable 'useM'
    gen.crit.fun: no visible binding for global variable 's'
    gplot1: no visible global function definition for 'gplot'
    gplot2: no visible global function definition for 'gplot'
    loadnetwork: no visible global function definition for 'Matrix'
    loadnetwork2: no visible global function definition for 'Matrix'
    opt.par: no visible global function definition for 'opt.par.tmp'
    opt.random.par: no visible global function definition for 'opt.par.tmp'
    opt.these.par: no visible global function definition for 'opt.par.tmp'
    opt.these.par: no visible binding for global variable 'm'
Flavor: r-oldrel-windows-ix86+x86_64