CRAN Package Check Results for Package boostSeq

Last updated on 2017-09-25 09:48:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.17 20.99 22.16 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.21 20.66 21.88 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 39.19 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 40.22 NOTE
r-devel-windows-ix86+x86_64 1.0 4.00 43.00 47.00 NOTE
r-patched-linux-x86_64 1.0 1.15 19.81 20.96 NOTE
r-patched-solaris-x86 1.0 48.70 NOTE
r-release-linux-x86_64 1.0 1.26 20.10 21.36 NOTE
r-release-windows-ix86+x86_64 1.0 4.00 66.00 70.00 NOTE
r-release-osx-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 4.00 41.00 45.00 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
    BugReports field is not a suitable URL but appears to contain an email address
     not specified by mailto: nor contained in < >
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘lpSolveAPI’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘genetics’ ‘lpSolveAPI’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    alleleEnrichment: no visible binding for global variable ‘na.omit’
    alleleEnrichment: no visible binding for global variable ‘na.pass’
    alleleEnrichment: no visible global function definition for
     ‘write.table’
    alleleEnrichment.data.alleles: no visible binding for global variable
     ‘na.omit’
    alleleEnrichment.data.alleles: no visible binding for global variable
     ‘na.pass’
    alleleEnrichment.data.alleles : <anonymous>: no visible global function
     definition for ‘allele.count’
    alleleEnrichment.data.alleles: no visible global function definition
     for ‘runif’
    alleleEnrichment.data.pheno: no visible global function definition for
     ‘read.table’
    alleleEnrichment.lp: no visible global function definition for
     ‘make.lp’
    alleleEnrichment.lp : <anonymous>: no visible global function
     definition for ‘set.column’
    alleleEnrichment.lp : <anonymous>: no visible global function
     definition for ‘set.type’
    alleleEnrichment.lp: no visible global function definition for
     ‘set.objfn’
    alleleEnrichment.lp: no visible global function definition for
     ‘set.constr.type’
    alleleEnrichment.lp: no visible global function definition for
     ‘set.rhs’
    alleleEnrichment.lp: no visible global function definition for
     ‘lp.control’
    alleleEnrichment.lp: no visible global function definition for
     ‘get.variables’
    getGenotypes : <anonymous>: no visible global function definition for
     ‘genotype’
    getRefAlleles: no visible global function definition for ‘read.table’
    getSnpWeights: no visible global function definition for ‘read.table’
    readMapfile: no visible global function definition for ‘read.table’
    Undefined global functions or variables:
     allele.count genotype get.variables lp.control make.lp na.omit
     na.pass read.table runif set.column set.constr.type set.objfn set.rhs
     set.type write.table
    Consider adding
     importFrom("stats", "na.omit", "na.pass", "runif")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64