CRAN Package Check Results for Package cancerTiming

Last updated on 2015-07-07 15:46:23.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0.0 0.72 19.00 19.72 NOTE
r-devel-linux-x86_64-debian-gcc 3.0.0 0.68 18.59 19.27 NOTE
r-devel-linux-x86_64-fedora-clang 3.0.0 36.16 NOTE
r-devel-linux-x86_64-fedora-gcc 3.0.0 34.37 NOTE
r-devel-osx-x86_64-clang 3.0.0 34.19 OK
r-devel-windows-ix86+x86_64 3.0.0 6.00 52.00 58.00 NOTE
r-patched-linux-x86_64 3.0.0 0.69 18.44 19.14 OK
r-patched-solaris-sparc 3.0.0 242.10 OK
r-patched-solaris-x86 3.0.0 49.00 OK
r-release-linux-x86_64 3.0.0 0.94 18.85 19.79 OK
r-release-osx-x86_64-mavericks 3.0.0 OK
r-release-windows-ix86+x86_64 3.0.0 4.00 55.00 59.00 OK
r-oldrel-windows-ix86+x86_64 3.0.0 4.00 64.00 68.00 OK

Check Details

Version: 3.0.0
Check: R code for possible problems
Result: NOTE
    .bayesEstimate : pi2theta: no visible global function definition for
     ‘head’
    .bayesEstimate : pi2theta: no visible global function definition for
     ‘tail’
    .bayesEstimate: no visible global function definition for ‘uniroot’
    .bayesEstimate: no visible global function definition for ‘stepfun’
    .bayesEstimate: no visible binding for global variable ‘quantile’
    .estimateQ : EStep : <anonymous>: no visible global function definition
     for ‘dbinom’
    .estimateQ : MStep: no visible global function definition for ‘tail’
    .estimateQ : MStep: no visible global function definition for ‘head’
    .estimateQ : MStep : gr: no visible global function definition for
     ‘tail’
    .estimateQ : MStep : gr: no visible global function definition for
     ‘head’
    .estimateQ : MStep: no visible global function definition for
     ‘optimize’
    .estimateQ : MStep: no visible global function definition for
     ‘constrOptim’
    .laplace: no visible global function definition for ‘optim’
    .logPosterior : pOfX : <anonymous>: no visible global function
     definition for ‘dbinom’
    .parametricSimulation: no visible global function definition for
     ‘rmultinom’
    .parametricSimulation : <anonymous>: no visible global function
     definition for ‘rbinom’
    .rejectsampling: no visible global function definition for ‘runif’
    divideGenome: no visible global function definition for ‘read.table’
    divideGenome : <anonymous>: no visible global function definition for
     ‘tail’
    eventTiming: no visible global function definition for ‘head’
    eventTiming: no visible binding for global variable ‘quantile’
    labelSeg: no visible global function definition for ‘read.table’
    mleAF : <anonymous> : <anonymous>: no visible global function
     definition for ‘dbinom’
    mleAF : <anonymous>: no visible global function definition for ‘dbinom’
    multidensity: no visible global function definition for ‘palette’
    multidensity : <anonymous>: no visible global function definition for
     ‘density’
    multidensity: no visible global function definition for ‘plot’
    multidensity : <anonymous>: no visible global function definition for
     ‘lines’
    plotAlleleByPosition: no visible global function definition for
     ‘palette’
    plotAlleleByPosition: no visible global function definition for ‘axis’
    plotAlleleByPosition: no visible global function definition for ‘par’
    plotAlleleByPosition: no visible global function definition for ‘rect’
    plotAlleleByPosition: no visible global function definition for
     ‘segments’
    plotAlleleDensity: no visible global function definition for ‘palette’
    plotAlleleDensity : lineFun : <anonymous>: no visible global function
     definition for ‘abline’
    plotAlleleDensity : lineFun: no visible global function definition for
     ‘legend’
    plotAlleleDensity : <anonymous>: no visible global function definition
     for ‘hist’
    plotCopies: no visible global function definition for ‘palette’
    plotCopies: no visible global function definition for ‘plot’
    plotCopies: no visible global function definition for ‘legend’
    plotPi0: no visible global function definition for ‘segments’
    plotPi0: no visible global function definition for ‘par’
    plotPi0: no visible global function definition for ‘head’
    plotPi0: no visible global function definition for ‘axis’
    plotPi0: no visible global function definition for ‘mtext’
    plotSegmentation: no visible global function definition for ‘palette’
    plotSegmentation: no visible global function definition for ‘plot’
    plotSegmentation: no visible global function definition for ‘segments’
    plotSeqCount: no visible global function definition for ‘palette’
    plotSeqCount: no visible global function definition for ‘quantile’
    plotSeqCount: no visible global function definition for ‘plot’
    plotSeqCount: no visible global function definition for ‘segments’
    plotSeqCount: no visible global function definition for ‘abline’
    readSimulation: no visible global function definition for ‘rpois’
    readSimulation : singleCall: no visible global function definition for
     ‘rpois’
    Undefined global functions or variables:
     abline axis constrOptim dbinom density head hist legend lines mtext
     optim optimize palette par plot quantile rbinom read.table rect
     rmultinom rpois runif segments stepfun tail uniroot
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64