CRAN Package Check Results for Package cancerTiming

Last updated on 2015-09-02 06:47:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0.0 0.68 18.55 19.23 NOTE
r-devel-linux-x86_64-debian-gcc 3.0.0 0.72 17.99 18.71 NOTE
r-devel-linux-x86_64-fedora-clang 3.0.0 36.95 NOTE
r-devel-linux-x86_64-fedora-gcc 3.0.0 36.47 NOTE
r-devel-osx-x86_64-clang 3.0.0 34.37 OK
r-devel-windows-ix86+x86_64 3.0.0 5.00 42.00 47.00 NOTE
r-patched-linux-x86_64 3.0.0 0.73 18.92 19.65 OK
r-patched-solaris-sparc 3.0.0 247.50 OK
r-patched-solaris-x86 3.0.0 54.30 OK
r-release-linux-x86_64 3.0.0 0.94 18.96 19.91 OK
r-release-osx-x86_64-mavericks 3.0.0 OK
r-release-windows-ix86+x86_64 3.0.0 4.00 36.00 40.00 OK
r-oldrel-windows-ix86+x86_64 3.0.0 7.00 48.00 55.00 OK

Check Details

Version: 3.0.0
Check: R code for possible problems
Result: NOTE
    .bayesEstimate : pi2theta: no visible global function definition for
     ‘head’
    .bayesEstimate : pi2theta: no visible global function definition for
     ‘tail’
    .bayesEstimate: no visible global function definition for ‘uniroot’
    .bayesEstimate: no visible global function definition for ‘stepfun’
    .bayesEstimate: no visible binding for global variable ‘quantile’
    .estimateQ : EStep : <anonymous>: no visible global function definition
     for ‘dbinom’
    .estimateQ : MStep: no visible global function definition for ‘tail’
    .estimateQ : MStep: no visible global function definition for ‘head’
    .estimateQ : MStep : gr: no visible global function definition for
     ‘tail’
    .estimateQ : MStep : gr: no visible global function definition for
     ‘head’
    .estimateQ : MStep: no visible global function definition for
     ‘optimize’
    .estimateQ : MStep: no visible global function definition for
     ‘constrOptim’
    .laplace: no visible global function definition for ‘optim’
    .logPosterior : pOfX : <anonymous>: no visible global function
     definition for ‘dbinom’
    .parametricSimulation: no visible global function definition for
     ‘rmultinom’
    .parametricSimulation : <anonymous>: no visible global function
     definition for ‘rbinom’
    .rejectsampling: no visible global function definition for ‘runif’
    divideGenome: no visible global function definition for ‘read.table’
    divideGenome : <anonymous>: no visible global function definition for
     ‘tail’
    eventTiming: no visible global function definition for ‘head’
    eventTiming: no visible binding for global variable ‘quantile’
    labelSeg: no visible global function definition for ‘read.table’
    mleAF : <anonymous> : <anonymous>: no visible global function
     definition for ‘dbinom’
    mleAF : <anonymous>: no visible global function definition for ‘dbinom’
    multidensity: no visible global function definition for ‘palette’
    multidensity : <anonymous>: no visible global function definition for
     ‘density’
    multidensity: no visible global function definition for ‘plot’
    multidensity : <anonymous>: no visible global function definition for
     ‘lines’
    plotAlleleByPosition: no visible global function definition for
     ‘palette’
    plotAlleleByPosition: no visible global function definition for ‘axis’
    plotAlleleByPosition: no visible global function definition for ‘par’
    plotAlleleByPosition: no visible global function definition for ‘rect’
    plotAlleleByPosition: no visible global function definition for
     ‘segments’
    plotAlleleDensity: no visible global function definition for ‘palette’
    plotAlleleDensity : lineFun : <anonymous>: no visible global function
     definition for ‘abline’
    plotAlleleDensity : lineFun: no visible global function definition for
     ‘legend’
    plotAlleleDensity : <anonymous>: no visible global function definition
     for ‘hist’
    plotCopies: no visible global function definition for ‘palette’
    plotCopies: no visible global function definition for ‘plot’
    plotCopies: no visible global function definition for ‘legend’
    plotPi0: no visible global function definition for ‘segments’
    plotPi0: no visible global function definition for ‘par’
    plotPi0: no visible global function definition for ‘head’
    plotPi0: no visible global function definition for ‘axis’
    plotPi0: no visible global function definition for ‘mtext’
    plotSegmentation: no visible global function definition for ‘palette’
    plotSegmentation: no visible global function definition for ‘plot’
    plotSegmentation: no visible global function definition for ‘segments’
    plotSeqCount: no visible global function definition for ‘palette’
    plotSeqCount: no visible global function definition for ‘quantile’
    plotSeqCount: no visible global function definition for ‘plot’
    plotSeqCount: no visible global function definition for ‘segments’
    plotSeqCount: no visible global function definition for ‘abline’
    readSimulation: no visible global function definition for ‘rpois’
    readSimulation : singleCall: no visible global function definition for
     ‘rpois’
    Undefined global functions or variables:
     abline axis constrOptim dbinom density head hist legend lines mtext
     optim optimize palette par plot quantile rbinom read.table rect
     rmultinom rpois runif segments stepfun tail uniroot
    Consider adding
     importFrom("grDevices", "palette")
     importFrom("graphics", "abline", "axis", "hist", "legend", "lines",
     "mtext", "par", "plot", "rect", "segments")
     importFrom("stats", "constrOptim", "dbinom", "density", "optim",
     "optimize", "quantile", "rbinom", "rmultinom", "rpois",
     "runif", "stepfun", "uniroot")
     importFrom("utils", "head", "read.table", "tail")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64