CRAN Package Check Results for Package cape

Last updated on 2015-08-29 20:47:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3 3.54 117.66 121.20 NOTE
r-devel-linux-x86_64-debian-gcc 1.3 3.59 118.49 122.08 NOTE
r-devel-linux-x86_64-fedora-clang 1.3 243.10 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3 233.80 NOTE
r-devel-osx-x86_64-clang 1.3 195.51 OK
r-devel-windows-ix86+x86_64 1.3 17.00 186.00 203.00 NOTE
r-patched-linux-x86_64 1.3 3.68 123.86 127.54 OK
r-patched-solaris-sparc 1.3 1427.30 OK
r-patched-solaris-x86 1.3 298.80 OK
r-release-linux-x86_64 1.3 3.58 119.62 123.19 OK
r-release-osx-x86_64-mavericks 1.3 OK
r-release-windows-ix86+x86_64 1.3 16.00 187.00 203.00 OK
r-oldrel-windows-ix86+x86_64 1.3 23.00 235.00 258.00 OK

Check Details

Version: 1.3
Check: R code for possible problems
Result: NOTE
    calc.p : get.emp.p: no visible global function definition for ‘median’
    calc.p: no visible global function definition for ‘p.adjust’
    direct.influence : direct.influence.max: no visible global function
     definition for ‘p.adjust’
    genome.wide.threshold.1D : <anonymous>: no visible global function
     definition for ‘lm’
    get.eigentraits : center.std: no visible global function definition for
     ‘sd’
    get.linearly.independent : get.cor: no visible global function
     definition for ‘var’
    get.linearly.independent : get.cor: no visible global function
     definition for ‘cor’
    get.network: no visible global function definition for ‘na.omit’
    get.pairs.for.pairscan : check.linkage: no visible global function
     definition for ‘cor’
    linkage.blocks.stepwise : get.chr.cor: no visible global function
     definition for ‘cor’
    linkage.blocks.stepwise: no visible global function definition for
     ‘pdf’
    linkage.blocks.stepwise: no visible global function definition for
     ‘image’
    linkage.blocks.stepwise: no visible global function definition for
     ‘lines’
    linkage.blocks.stepwise: no visible global function definition for
     ‘dev.off’
    myImagePlot: no visible global function definition for ‘layout’
    myImagePlot: no visible global function definition for
     ‘colorRampPalette’
    myImagePlot: no visible global function definition for ‘par’
    myImagePlot: no visible global function definition for ‘plot.new’
    myImagePlot: no visible global function definition for ‘plot.window’
    myImagePlot: no visible global function definition for ‘text’
    myImagePlot: no visible binding for global variable ‘image’
    myImagePlot: no visible global function definition for ‘points’
    myImagePlot: no visible global function definition for ‘polygon’
    myImagePlot: no visible global function definition for ‘axis’
    myImagePlot: no visible global function definition for ‘median’
    myImagePlot: no visible global function definition for ‘image’
    norm.pheno : center.std: no visible global function definition for ‘sd’
    one.pairscan: no visible global function definition for ‘cor’
    one.pairscan : get.model.results: no visible global function definition
     for ‘lm’
    one.pairscan : get.model.results: no visible global function definition
     for ‘coefficients’
    one.pairscan : get.model.results: no visible global function definition
     for ‘coef’
    one.pairscan : get.model.results: no visible global function definition
     for ‘vcov’
    one.singlescan : get.stats: no visible global function definition for
     ‘lm’
    plotNetwork: no visible global function definition for ‘plot.new’
    plotNetwork: no visible global function definition for ‘plot.window’
    plotNetwork: no visible global function definition for ‘par’
    plotNetwork: no visible global function definition for ‘points’
    plotNetwork: no visible global function definition for ‘segments’
    plotNetwork: no visible global function definition for ‘text’
    plotNetwork : <anonymous>: no visible global function definition for
     ‘dist’
    plotNetwork: no visible global function definition for ‘xspline’
    plotPairscan: no visible global function definition for ‘pdf’
    plotPairscan: no visible global function definition for ‘dev.off’
    plotSVD: no visible global function definition for ‘rgb’
    plotSVD: no visible global function definition for ‘layout’
    plotSVD: no visible global function definition for ‘par’
    plotSVD: no visible global function definition for ‘plot.new’
    plotSVD: no visible global function definition for ‘plot.window’
    plotSVD: no visible global function definition for ‘text’
    plotSVD: no visible global function definition for ‘image’
    plotSVD: no visible global function definition for ‘barplot’
    plotSinglescan: no visible global function definition for ‘layout’
    plotSinglescan: no visible global function definition for ‘par’
    plotSinglescan: no visible global function definition for ‘plot.new’
    plotSinglescan: no visible global function definition for ‘plot.window’
    plotSinglescan: no visible global function definition for ‘polygon’
    plotSinglescan: no visible global function definition for ‘text’
    plotSinglescan: no visible global function definition for ‘abline’
    plotSinglescan: no visible global function definition for ‘points’
    plotSinglescan: no visible global function definition for ‘mtext’
    plotSinglescan: no visible global function definition for ‘axis’
    plotSinglescan: no visible global function definition for ‘legend’
    plotSinglescan.heat: no visible global function definition for
     ‘colorRampPalette’
    plotSinglescan.heat: no visible global function definition for ‘image’
    plotSinglescan.heat: no visible global function definition for
     ‘polygon’
    plotSinglescan.heat: no visible global function definition for ‘par’
    plotSinglescan.heat: no visible global function definition for ‘text’
    plotSinglescan.heat: no visible global function definition for
     ‘segments’
    plotVariantInfluences: no visible global function definition for
     ‘na.omit’
    plotVariantInfluences: no visible global function definition for
     ‘median’
    plotVariantInfluences: no visible global function definition for
     ‘plot.new’
    plotVariantInfluences: no visible global function definition for
     ‘plot.window’
    plotVariantInfluences: no visible global function definition for ‘text’
    plotVariantInfluences: no visible global function definition for
     ‘legend’
    read.population: no visible global function definition for ‘read.table’
    read.population: no visible global function definition for ‘na.omit’
    rz.transform: no visible global function definition for ‘sd’
    rz.transform: no visible global function definition for ‘runif’
    rz.transform: no visible global function definition for ‘qnorm’
    select.markers.for.pairscan: no visible global function definition for
     ‘write.table’
    singlescan : get.stats: no visible global function definition for ‘lm’
    writePopulation: no visible global function definition for
     ‘write.table’
    writeVariantInfluences: no visible global function definition for
     ‘na.omit’
    writeVariantInfluences: no visible global function definition for
     ‘write.table’
    Undefined global functions or variables:
     abline axis barplot coef coefficients colorRampPalette cor dev.off
     dist image layout legend lines lm median mtext na.omit p.adjust par
     pdf plot.new plot.window points polygon qnorm read.table rgb runif sd
     segments text var vcov write.table xspline
    Consider adding
     importFrom("grDevices", "colorRampPalette", "dev.off", "pdf", "rgb")
     importFrom("graphics", "abline", "axis", "barplot", "image", "layout",
     "legend", "lines", "mtext", "par", "plot.new",
     "plot.window", "points", "polygon", "segments", "text",
     "xspline")
     importFrom("stats", "coef", "coefficients", "cor", "dist", "lm",
     "median", "na.omit", "p.adjust", "qnorm", "runif", "sd",
     "var", "vcov")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64