CRAN Package Check Results for Package cape

Last updated on 2014-07-28 03:49:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 4.51 136.09 140.60 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 4.36 145.57 149.93 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 322.41 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 295.62 NOTE
r-devel-osx-x86_64-clang 1.2 240.40 NOTE
r-devel-windows-ix86+x86_64 1.2 11.00 186.00 197.00 NOTE
r-patched-linux-x86_64 1.2 4.55 133.65 138.20 NOTE
r-patched-solaris-sparc 1.2 1508.00 NOTE
r-patched-solaris-x86 1.2 345.60 NOTE
r-release-linux-ix86 1.2 5.46 158.61 164.07 NOTE
r-release-linux-x86_64 1.2 4.72 134.82 139.55 NOTE
r-release-osx-x86_64-mavericks 1.2 NOTE
r-release-osx-x86_64-snowleopard 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 12.00 199.00 211.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 15.00 180.00 195.00 NOTE

Check Details

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Unexported object imported by a ':::' call: igraph:::igraph.Arrows
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    There were 14 individuals removed due to missing phenotypes.
    
    Removing markers on the X chromosome
    
    1 marker(s) rejected due to linear non-independence.
     For more information see markers.removed.txt
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'cape.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `hyphenat.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    st/cape/vignettes/cape.tex:14: ==> Fatal error occurred, no output PDF file pr
    oduced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    There were 14 individuals removed due to missing phenotypes.
    
    Removing markers on the X chromosome
    
    1 marker(s) rejected due to linear non-independence.
     For more information see markers.removed.txt
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'cape.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `hyphenat.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    cape.Rcheck/vign_test/cape/vignettes/cape.tex:14: ==> Fatal error occurred, no
     output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard