CRAN Package Check Results for Package cape

Last updated on 2017-09-19 21:47:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.2 4.13 217.23 221.35 OK
r-devel-linux-x86_64-debian-gcc 2.0.2 4.10 220.35 224.45 OK
r-devel-linux-x86_64-fedora-clang 2.0.2 260.09 OK
r-devel-linux-x86_64-fedora-gcc 2.0.2 273.08 OK
r-devel-windows-ix86+x86_64 2.0.2 13.00 465.00 478.00 OK
r-patched-linux-x86_64 2.0.2 4.12 220.36 224.48 OK
r-patched-solaris-x86 2.0.2 721.20 OK
r-release-linux-x86_64 2.0.2 4.05 221.63 225.68 OK
r-release-windows-ix86+x86_64 2.0.2 13.00 319.00 332.00 OK
r-release-osx-x86_64 2.0.2 NOTE
r-oldrel-windows-ix86+x86_64 2.0.2 11.00 276.00 287.00 OK
r-oldrel-osx-x86_64 2.0.2 WARN

Check Details

Version: 2.0.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Removing 14 individuals due to missing phenotypes.
    
    
    2 marker(s) rejected due to linear non-independence.
     For more information see markers.removed.for.non.independence.txt
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'cape.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `hyphenat.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.14 \usepackage
     [english]{babel}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Version: 2.0.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-oldrel-osx-x86_64

Version: 2.0.2
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 2.0.2
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 2.0.2
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-oldrel-osx-x86_64

Version: 2.0.2
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 2.0.2
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 2.0.2
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 2.0.2
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64

Version: 2.0.2
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64