CRAN Package Check Results for Package cape

Last updated on 2014-12-21 08:47:30.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3 4.68 129.72 134.40 OK
r-devel-linux-x86_64-debian-gcc 1.3 4.52 123.93 128.45 OK
r-devel-linux-x86_64-fedora-clang 1.3 295.63 OK
r-devel-linux-x86_64-fedora-gcc 1.3 269.13 OK
r-devel-osx-x86_64-clang 1.3 240.61 OK
r-devel-windows-ix86+x86_64 1.3 14.00 172.00 186.00 OK
r-patched-linux-x86_64 1.3 4.58 140.30 144.88 OK
r-patched-solaris-sparc 1.3 1517.30 OK
r-patched-solaris-x86 1.3 351.30 OK
r-release-linux-ix86 1.3 5.42 161.09 166.50 OK
r-release-linux-x86_64 1.3 4.58 140.68 145.26 OK
r-release-osx-x86_64-mavericks 1.3 NOTE
r-release-osx-x86_64-snowleopard 1.3 OK
r-release-windows-ix86+x86_64 1.3 14.00 199.00 213.00 OK
r-oldrel-windows-ix86+x86_64 1.2 12.00 189.00 201.00 NOTE

Check Details

Version: 1.3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    There were 14 individuals removed due to missing phenotypes.
    
    Removing markers on the X chromosome
    
    1 marker(s) rejected due to linear non-independence.
     For more information see markers.removed.txt
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'cape.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `hyphenat.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    st/cape/vignettes/cape.tex:14: ==> Fatal error occurred, no output PDF file pr
    oduced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Unexported object imported by a ':::' call: 'igraph:::igraph.Arrows'
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-ix86+x86_64