CRAN Package Check Results for Package cghFLasso

Last updated on 2014-09-16 11:49:11.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2-1 1.03 14.22 15.25 NOTE
r-devel-linux-x86_64-debian-gcc 0.2-1 1.08 14.20 15.28 NOTE
r-devel-linux-x86_64-fedora-clang 0.2-1 30.15 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2-1 28.97 NOTE
r-devel-osx-x86_64-clang 0.2-1 27.67 NOTE
r-devel-windows-ix86+x86_64 0.2-1 6.00 30.00 36.00 NOTE
r-patched-linux-x86_64 0.2-1 1.12 14.48 15.60 NOTE
r-patched-solaris-sparc 0.2-1 189.10 NOTE
r-patched-solaris-x86 0.2-1 42.40 NOTE
r-release-linux-ix86 0.2-1 1.64 22.52 24.16 NOTE
r-release-linux-x86_64 0.2-1 1.13 14.76 15.89 NOTE
r-release-osx-x86_64-mavericks 0.2-1 NOTE
r-release-windows-ix86+x86_64 0.2-1 8.00 33.00 41.00 NOTE
r-oldrel-windows-ix86+x86_64 0.2-1 6.00 36.00 42.00 NOTE

Check Details

Version: 0.2-1
Check: R code for possible problems
Result: NOTE
    L2L1ExpandFit: no visible global function definition for
     ‘L2L1PathExtract’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2-1
Check: Rd line widths
Result: NOTE
    Rd file 'cghFLasso.Rd':
     \usage lines wider than 90 characters:
     cghFLasso(CGH.Array, chromosome=NULL, nucleotide.position=NULL, FL.norm=NULL, FDR=NULL, filter=NULL, missing.PlugIn=TRUE, smooth.size=5 ... [TRUNCATED]
     \examples lines wider than 100 characters:
     Disease.FL<-cghFLasso(CGH$DiseaseArray, chromosome=CGH$chromosome, nucleotide.position=CGH$nucposition, FL.norm=Normal.FL, FDR=0.01)
    
    Rd file 'cghFLasso.ref.Rd':
     \examples lines wider than 100 characters:
     Disease.FL<-cghFLasso(CGH$DiseaseArray, chromosome=CGH$chromosome, nucleotide.position=CGH$nucposition, FL.norm=Normal.FL, FDR=0.01)
    
    Rd file 'output.cghFLasso.Rd':
     \examples lines wider than 100 characters:
     Disease.FL<-cghFLasso(CGH$DiseaseArray, chromosome=CGH$chromosome, nucleotide.position=CGH$nucposition, FL.norm=Normal.FL, FDR=0.01)
    
    Rd file 'plot.cghFLasso.Rd':
     \examples lines wider than 100 characters:
     Disease.FL<-cghFLasso(CGH$DiseaseArray, chromosome=CGH$chromosome, nucleotide.position=CGH$nucposition, FL.norm=Normal.FL, FDR=0.01)
    
    Rd file 'summary.cghFLasso.Rd':
     \examples lines wider than 100 characters:
     Disease.FL<-cghFLasso(CGH$DiseaseArray, chromosome=CGH$chromosome, nucleotide.position=CGH$nucposition, FL.norm=Normal.FL, FDR=0.01)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64

Version: 0.2-1
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.cghFLasso':
     ‘plot.cghFLasso’
    
    S3 methods shown with full name in documentation object 'summary.cghFLasso':
     ‘summary.cghFLasso’ ‘print.summary.cghFLasso’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64