CRAN Package Check Results for Package chemometrics

Last updated on 2014-09-20 20:46:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.8 2.72 84.20 86.92 NOTE
r-devel-linux-x86_64-debian-gcc 1.3.8 2.40 84.34 86.73 NOTE
r-devel-linux-x86_64-fedora-clang 1.3.8 184.60 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.8 173.41 NOTE
r-devel-osx-x86_64-clang 1.3.8 143.71 NOTE
r-devel-windows-ix86+x86_64 1.3.8 9.00 118.00 127.00 NOTE
r-patched-linux-x86_64 1.3.8 2.93 88.53 91.46 NOTE
r-patched-solaris-sparc 1.3.8 1090.70 NOTE
r-patched-solaris-x86 1.3.8 214.30 NOTE
r-release-linux-ix86 1.3.8 4.07 110.78 114.85 NOTE
r-release-linux-x86_64 1.3.8 2.65 89.86 92.51 NOTE
r-release-osx-x86_64-mavericks 1.3.8 NOTE
r-release-windows-ix86+x86_64 1.3.8 9.00 127.00 136.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3.8 11.00 128.00 139.00 NOTE

Check Details

Version: 1.3.8
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘class’ ‘e1071’ ‘gclus’ ‘lars’ ‘MASS’ ‘mclust’ ‘nnet’ ‘pcaPP’ ‘pls’
     ‘rpart’ ‘robustbase’ ‘som’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.3.8
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MASS’ ‘class’ ‘e1071’ ‘lars’ ‘mclust’ ‘nnet’ ‘pcaPP’ ‘pls’
     ‘robustbase’ ‘rpart’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘gclus’ ‘lars’ ‘mclust’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported object imported by a ':::' call: ‘pls:::delete.intercept’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3.8
Check: R code for possible problems
Result: NOTE
    clvalidity: no visible global function definition for ‘Mclust’
    lassoCV: no visible global function definition for ‘cv.folds’
    lassoCV: no visible global function definition for ‘lars’
    lassocoef: no visible global function definition for ‘lars’
    lmCV: no visible global function definition for ‘cvsegments’
    mvr_dcv: no visible global function definition for ‘cvsegments’
    pcaCV: no visible global function definition for ‘cvsegments’
    prm_cv : prm_cvsub: no visible global function definition for
     ‘cvsegments’
    prm_dcv: no visible global function definition for ‘cvsegments’
    ridgeCV: no visible global function definition for ‘cvsegments’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.3.8
Check: Rd line widths
Result: NOTE
    Rd file 'RPvectors.Rd':
     \usage lines wider than 90 characters:
     RPvectors(a, m, ortho = "none", distr = "uniform", par_unif = c(-1, 1), par_norm = c(0, 1), par_eq = c(-1, 0, 1), par_uneq = c(-sqrt(3) ... [TRUNCATED]
    
    Rd file 'drawMahal.Rd':
     \usage lines wider than 90 characters:
     drawMahal(x, center, covariance, quantile = c(0.975, 0.75, 0.5, 0.25), m = 1000, lwdcrit = 1, ...)
    
    Rd file 'lassoCV.Rd':
     \usage lines wider than 90 characters:
     lassoCV(formula, data, K = 10, fraction = seq(0, 1, by = 0.05), trace = FALSE, plot.opt = TRUE, sdfact = 2, legpos = "topright", ...)
    
    Rd file 'lmCV.Rd':
     \usage lines wider than 90 characters:
     lmCV(formula, data, repl = 100, segments = 4, segment.type = c("random", "consecutive", "interleaved"), length.seg, trace = FALSE, ...)
    
    Rd file 'pcaCV.Rd':
     \usage lines wider than 90 characters:
     pcaCV(X, amax, center = TRUE, scale = TRUE, repl = 50, segments = 4, segment.type = c("random", "consecutive", "interleaved"), length.s ... [TRUNCATED]
    
    Rd file 'prm_cv.Rd':
     \usage lines wider than 90 characters:
     prm_cv(X, y, a, fairct = 4, opt = "median", subset = NULL, segments = 10, segment.type = "random",
    
    Rd file 'svmEval.Rd':
     \usage lines wider than 90 characters:
     svmEval(X, grp, train, kfold = 10, gamvec = seq(0, 10, by = 1), kernel = "radial", degree = 3,
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3.8
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: pcaPP
    Loading required package: mvtnorm
    Loading required package: pls
    
    Attaching package: ‘pls’
    
    The following object is masked from ‘package:stats’:
    
     loadings
    
    Loading required package: rpart
    Loading required package: robustbase
    Loading required package: som
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'chemometrics-vignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `shadethm.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    /vign_test/chemometrics/vignettes/chemometrics-vignette.tex:9: ==> Fatal error
     occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks