CRAN Package Check Results for Package chemometrics

Last updated on 2014-07-29 15:51:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.8 2.94 81.11 84.05 NOTE
r-devel-linux-x86_64-debian-gcc 1.3.8 2.54 80.27 82.81 NOTE
r-devel-linux-x86_64-fedora-clang 1.3.8 193.35 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.8 184.34 NOTE
r-devel-osx-x86_64-clang 1.3.8 141.98 NOTE
r-devel-windows-ix86+x86_64 1.3.8 10.00 128.00 138.00 NOTE
r-patched-linux-x86_64 1.3.8 2.70 80.36 83.06 NOTE
r-patched-solaris-sparc 1.3.8 1063.70 NOTE
r-patched-solaris-x86 1.3.8 238.00 NOTE
r-release-linux-ix86 1.3.8 3.55 111.17 114.72 NOTE
r-release-linux-x86_64 1.3.8 2.63 83.81 86.44 NOTE
r-release-osx-x86_64-mavericks 1.3.8 NOTE
r-release-windows-ix86+x86_64 1.3.8 11.00 127.00 138.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3.8 10.00 125.00 135.00 NOTE

Check Details

Version: 1.3.8
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     class e1071 gclus lars MASS mclust nnet pcaPP pls
     rpart robustbase som
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.3.8
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     MASS class e1071 lars mclust nnet pcaPP pls
     robustbase rpart
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     gclus lars mclust
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported object imported by a ':::' call: pls:::delete.intercept
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3.8
Check: Rd line widths
Result: NOTE
    Rd file 'RPvectors.Rd':
     \usage lines wider than 90 characters:
     RPvectors(a, m, ortho = "none", distr = "uniform", par_unif = c(-1, 1), par_norm = c(0, 1), par_eq = c(-1, 0, 1), par_uneq = c(-sqrt(3) ... [TRUNCATED]
    
    Rd file 'drawMahal.Rd':
     \usage lines wider than 90 characters:
     drawMahal(x, center, covariance, quantile = c(0.975, 0.75, 0.5, 0.25), m = 1000, lwdcrit = 1, ...)
    
    Rd file 'lassoCV.Rd':
     \usage lines wider than 90 characters:
     lassoCV(formula, data, K = 10, fraction = seq(0, 1, by = 0.05), trace = FALSE, plot.opt = TRUE, sdfact = 2, legpos = "topright", ...)
    
    Rd file 'lmCV.Rd':
     \usage lines wider than 90 characters:
     lmCV(formula, data, repl = 100, segments = 4, segment.type = c("random", "consecutive", "interleaved"), length.seg, trace = FALSE, ...)
    
    Rd file 'pcaCV.Rd':
     \usage lines wider than 90 characters:
     pcaCV(X, amax, center = TRUE, scale = TRUE, repl = 50, segments = 4, segment.type = c("random", "consecutive", "interleaved"), length.s ... [TRUNCATED]
    
    Rd file 'prm_cv.Rd':
     \usage lines wider than 90 characters:
     prm_cv(X, y, a, fairct = 4, opt = "median", subset = NULL, segments = 10, segment.type = "random",
    
    Rd file 'svmEval.Rd':
     \usage lines wider than 90 characters:
     svmEval(X, grp, train, kfold = 10, gamvec = seq(0, 10, by = 1), kernel = "radial", degree = 3,
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.8
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: pcaPP
    Loading required package: mvtnorm
    Loading required package: pls
    
    Attaching package: pls
    
    The following object is masked from package:stats :
    
     loadings
    
    Loading required package: rpart
    Loading required package: robustbase
    Loading required package: som
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'chemometrics-vignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `shadethm.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    /vign_test/chemometrics/vignettes/chemometrics-vignette.tex:9: ==> Fatal error
     occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks