CRAN Package Check Results for Package cherry

Last updated on 2014-04-24 15:50:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3-8 0.82 25.50 26.32 NOTE
r-devel-linux-x86_64-debian-gcc 0.3-8 0.86 25.70 26.56 NOTE
r-devel-linux-x86_64-fedora-clang 0.3-8 55.77 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3-8 55.04 NOTE
r-devel-osx-x86_64-clang 0.3-8 47.98 NOTE
r-devel-osx-x86_64-gcc 0.3-8 ERROR
r-devel-windows-ix86+x86_64 0.3-8 3.00 38.00 41.00 NOTE
r-patched-linux-x86_64 0.3-8 0.85 25.71 26.56 NOTE
r-patched-solaris-sparc 0.3-8 305.40 NOTE
r-patched-solaris-x86 0.3-8 72.60 NOTE
r-release-linux-ix86 0.3-8 2.00 48.00 50.00 NOTE
r-release-linux-x86_64 0.3-8 0.85 26.39 27.24 NOTE
r-release-osx-x86_64-mavericks 0.3-8 ERROR
r-release-windows-ix86+x86_64 0.3-8 3.00 40.00 43.00 NOTE
r-oldrel-windows-ix86+x86_64 0.3-8 3.00 46.00 49.00 NOTE

Check Details

Version: 0.3-8
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘bitops’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3-8
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘changelog.txt’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3-8
Check: Rd line widths
Result: NOTE
    Rd file 'adjusted.Rd':
     \examples lines wider than 100 characters:
     # From what confidence level would we conclude that more than 2 of the following hypotheses would be false?
    
    Rd file 'shortcuts.Rd':
     \examples lines wider than 100 characters:
     TM<-sapply(1:nrow(smallglb), function(i) mt.sample.teststat(smallglb[i,], golub.cl,test="t.equalvar",B=1000))
     p<-apply(smallglb,1, function(z) t.test(z[golub.cl==0],z[golub.cl==1],var.equal=TRUE)$p.value) # p-values
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3-8
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘multtest’
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 0.3-8
Check: examples
Result: ERROR
    Running examples in ‘cherry-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Select with shortcuts
    > ### Title: Confidence limits for the number of true hypotheses, with
    > ### shortcuts.
    > ### Aliases: pickFisher pickSimes pickMeinshausen curveFisher curveSimes
    > ### curveMeinshausen
    > ### Keywords: htest
    >
    > ### ** Examples
    >
    > # Fisher's method
    > data(NAEP)
    > pickFisher(NAEP, c("NH", "NC", "IA"))
    Rejected 3 hypotheses at confidence level 0.95.
    Correct rejections >= 2; False rejections <= 1.
    > pickFisher(NAEP, 1:7)
    Rejected 7 hypotheses at confidence level 0.95.
    Correct rejections >= 6; False rejections <= 1.
    > curveFisher(NAEP)
    > curveFisher(NAEP, order=7:1)
    >
    >
    > # Simes method
    > pickSimes(NAEP, c("NH", "NC", "IA"))
    Rejected 3 hypotheses. At confidence level 0.95:
    Correct rejections >= 2; False rejections <= 1.
    > pickSimes(NAEP, 1:7)
    Rejected 7 hypotheses. At confidence level 0.95:
    Correct rejections >= 6; False rejections <= 1.
    > curveSimes(NAEP)
    > curveSimes(NAEP, select=1:7)
    >
    > # Meinshausen's method
    > library(multtest)
    Error in library(multtest) : there is no package called ‘multtest’
    Execution halted
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks