CRAN Package Check Results for Package circular

Last updated on 2017-06-22 15:48:19.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4-7 2.97 47.51 50.48 WARN
r-devel-linux-x86_64-debian-gcc 0.4-7 2.82 47.43 50.25 WARN
r-devel-linux-x86_64-fedora-clang 0.4-7 89.27 WARN
r-devel-linux-x86_64-fedora-gcc 0.4-7 85.15 WARN
r-devel-windows-ix86+x86_64 0.4-7 22.00 100.00 122.00 WARN
r-patched-linux-x86_64 0.4-7 2.70 46.04 48.74 WARN
r-patched-solaris-sparc 0.4-7 538.30 WARN
r-patched-solaris-x86 0.4-7 99.00 WARN
r-release-linux-x86_64 0.4-7 2.59 46.06 48.65 WARN
r-release-windows-ix86+x86_64 0.4-7 27.00 128.00 155.00 WARN
r-release-osx-x86_64 0.4-7 WARN
r-oldrel-windows-ix86+x86_64 0.4-7 31.00 86.00 117.00 NOTE
r-oldrel-osx-x86_64 0.4-7 NOTE

Check Details

Version: 0.4-7
Check: S3 generic/method consistency
Result: WARN
    median:
     function(x, na.rm, ...)
    median.circular:
     function(x, na.rm)
    
    median:
     function(x, na.rm, ...)
    median.circular:
     function(x, na.rm)
    
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
    
    Found the following apparent S3 methods exported but not registered:
     as.data.frame.circular lines.edf modal.region.circular
     modal.region.default plot.edf plot.function.circular
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4-7
Check: foreign function calls
Result: NOTE
    Call with DUP:
     .C("R_distance", x = as.double(x), nr = N, nc = ncol(x), d = double(N *
     (N - 1)/2), diag = as.integer(FALSE), method = as.integer(method),
     DUP = FALSE, NAOK = TRUE, PACKAGE = "circular")
    DUP is no longer supported and will be ignored.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.4-7
Check: R code for possible problems
Result: NOTE
    AovCircularRad: no visible global function definition for ‘pf’
    AovCircularRad: no visible global function definition for ‘pchisq’
    AxisCircularRad: no visible global function definition for
     ‘lines.default’
    AxisCircularRad: no visible global function definition for
     ‘text.default’
    AxisCircularRad: no visible global function definition for ‘text’
    Calpha : I2n : temp: no visible global function definition for
     ‘integrate’
    Calpha : I3n : temp: no visible global function definition for
     ‘integrate’
    Calpha : lhs : temp: no visible global function definition for
     ‘integrate’
    Calpha : temp: no visible global function definition for ‘uniroot’
    Calphaapprox : temp: no visible global function definition for ‘qchisq’
    Calphaapprox : temp: no visible global function definition for ‘qf’
    CirclePlotRad: no visible global function definition for ‘par’
    CirclePlotRad: no visible global function definition for ‘plot.default’
    ClmLocationCircularRad: no visible global function definition for
     ‘lm.wfit’
    ClmLocationCircularStartRad : beta.init: no visible global function
     definition for ‘lm’
    ClmLocationCircularStartRad: no visible global function definition for
     ‘optim’
    CorCircularRad: no visible global function definition for ‘pnorm’
    DgenvonmisesRad: no visible global function definition for ‘integrate’
    DjonespewseyRad: no visible global function definition for ‘integrate’
    EqualKappaTestRad: no visible global function definition for ‘pchisq’
    LinesCircularRad: no visible global function definition for
     ‘lines.default’
    LmCircularccRad: no visible global function definition for ‘lm’
    LmCircularccRad: no visible global function definition for ‘pchisq’
    LmCircularclRad: no visible global function definition for ‘lm’
    LmCircularclRad: no visible global function definition for ‘pnorm’
    LsfitCircleRad: no visible global function definition for ‘optim’
    MlewrappedcauchyRad: no visible global function definition for
     ‘uniroot’
    PointsCircularRad: no visible global function definition for
     ‘points.default’
    PointsCircularRad: no visible global function definition for
     ‘hist.default’
    Ralpha : I2n : temp: no visible global function definition for
     ‘integrate’
    Ralpha : I3n : temp: no visible global function definition for
     ‘integrate’
    Ralpha : lhs : temp: no visible global function definition for
     ‘integrate’
    Ralpha : temp: no visible global function definition for ‘uniroot’
    Ralphaapprox : temp: no visible global function definition for ‘qchisq’
    Ralphaapprox : temp: no visible global function definition for ‘qf’
    RaoTestRad: no visible global function definition for ‘pchisq’
    RayleighTestRad: no visible global function definition for ‘pnorm’
    RayleighTestRad: no visible global function definition for ‘dnorm’
    RosediagOSRad: no visible global function definition for ‘hist.default’
    RosediagOSRad: no visible global function definition for
     ‘lines.default’
    RosediagRad: no visible global function definition for ‘hist.default’
    RosediagRad: no visible global function definition for ‘polygon’
    RwrappedcauchyRad: no visible global function definition for ‘rcauchy’
    RwrappednormalRad: no visible global function definition for ‘rnorm’
    TicksCircularRad: no visible global function definition for
     ‘lines.default’
    WallraffTestRad: no visible global function definition for
     ‘kruskal.test’
    WatsonWheelerTestRad: no visible global function definition for
     ‘pchisq’
    WatsonWilliamsTestRad: no visible global function definition for ‘pf’
    allcrosses: no visible global function definition for ‘approxfun’
    aov.circular: no visible global function definition for
     ‘complete.cases’
    area: no visible global function definition for ‘approxfun’
    area : int: no visible global function definition for ‘integrate’
    arrows.circular: no visible global function definition for ‘arrows’
    axis.circular: no visible global function definition for ‘par’
    axis.circular: no visible global function definition for ‘na.omit’
    bw.cv.ml.circular: no visible global function definition for ‘optimize’
    bw.cv.mse.circular : mse.internal: no visible global function
     definition for ‘integrate’
    bw.cv.mse.circular: no visible global function definition for
     ‘optimize’
    bw.nrd.circular: no visible global function definition for ‘uniroot’
    circle.control: no visible global function definition for ‘par’
    circular.colors: no visible global function definition for ‘hsv’
    clm: no visible global function definition for ‘is.empty.model’
    clm: no visible global function definition for ‘model.response’
    clm: no visible global function definition for ‘model.matrix’
    clm: no visible global function definition for ‘model.weights’
    clm: no visible global function definition for ‘model.offset’
    clm: no visible global function definition for ‘model.extract’
    clm: no visible global function definition for ‘.getXlevels’
    cor.circular: no visible global function definition for
     ‘complete.cases’
    cross: no visible global function definition for ‘approxfun’
    cross: no visible global function definition for ‘uniroot’
    equal.kappa.test: no visible global function definition for
     ‘complete.cases’
    formula.clm: no visible global function definition for ‘formula’
    heatmap.circular: no visible binding for global variable ‘hclust’
    heatmap.circular : <anonymous>: no visible global function definition
     for ‘reorder’
    heatmap.circular: no visible global function definition for
     ‘as.dendrogram’
    heatmap.circular: no visible global function definition for
     ‘order.dendrogram’
    heatmap.circular: no visible global function definition for ‘par’
    heatmap.circular: no visible global function definition for ‘layout’
    heatmap.circular: no visible global function definition for ‘image’
    heatmap.circular: no visible global function definition for ‘mtext’
    heatmap.circular: no visible global function definition for ‘plot’
    heatmap.circular: no visible global function definition for ‘frame’
    heatmap.circular: no visible global function definition for ‘title’
    kuiper.test: no visible global function definition for ‘na.omit’
    lines.circular: no visible global function definition for
     ‘complete.cases’
    lines.density.circular: no visible global function definition for
     ‘lines.default’
    lines.density.circular: no visible global function definition for
     ‘abline’
    lines.density.circular: no visible global function definition for
     ‘points.default’
    lines.edf: no visible global function definition for ‘lines.default’
    lines.modal.region.circular: no visible global function definition for
     ‘par’
    lines.modal.region.circular: no visible global function definition for
     ‘lines’
    lines.modal.region.circular: no visible global function definition for
     ‘abline’
    lines.modal.region.circular: no visible global function definition for
     ‘polygon’
    lm.circular.cc: no visible global function definition for
     ‘complete.cases’
    lm.circular.cl: no visible global function definition for
     ‘complete.cases’
    lsfit.circle: no visible global function definition for
     ‘complete.cases’
    make.circular.link : linkfun: no visible global function definition for
     ‘qnorm’
    make.circular.link : linkinv: no visible global function definition for
     ‘qnorm’
    make.circular.link : linkinv: no visible global function definition for
     ‘pnorm’
    make.circular.link : mu.eta: no visible global function definition for
     ‘dnorm’
    medianHL.default: no visible global function definition for
     ‘median.default’
    mle.cardioid: no visible global function definition for ‘na.omit’
    mle.vonmises: no visible global function definition for ‘na.omit’
    mle.vonmises.bootstrap.ci: no visible global function definition for
     ‘na.omit’
    mle.wrappedcauchy: no visible global function definition for ‘na.omit’
    mle.wrappednormal: no visible global function definition for ‘na.omit’
    modal.region.circular: no visible global function definition for
     ‘uniroot’
    plot.circular: no visible global function definition for ‘na.omit’
    plot.density.circular: no visible global function definition for
     ‘plot.default’
    plot.density.circular: no visible global function definition for
     ‘abline’
    plot.density.circular: no visible global function definition for
     ‘points’
    plot.edf: no visible global function definition for ‘na.omit’
    plot.edf: no visible global function definition for ‘plot.default’
    plot.lsfit.circle: no visible global function definition for ‘par’
    plot.lsfit.circle: no visible global function definition for
     ‘plot.default’
    plot.lsfit.circle: no visible global function definition for
     ‘lines.default’
    plot.lsfit.circle: no visible global function definition for
     ‘points.default’
    plot.lsfit.circle: no visible global function definition for
     ‘text.default’
    plot.modal.region.circular: no visible global function definition for
     ‘par’
    plot.modal.region.circular: no visible global function definition for
     ‘plot’
    plot.modal.region.circular: no visible global function definition for
     ‘abline’
    plot.modal.region.circular: no visible global function definition for
     ‘polygon’
    plot.totalvariation.circular: no visible global function definition for
     ‘par’
    plot.totalvariation.circular: no visible global function definition for
     ‘plot’
    plot.totalvariation.circular: no visible global function definition for
     ‘axTicks’
    plot.totalvariation.circular: no visible global function definition for
     ‘polygon’
    plot.totalvariation.circular: no visible global function definition for
     ‘abline’
    points.circular: no visible global function definition for ‘na.omit’
    pp.plot: no visible global function definition for ‘na.omit’
    pp.plot: no visible global function definition for ‘plot.default’
    pp.plot: no visible global function definition for ‘abline’
    print.clm: no visible global function definition for ‘coef’
    print.clm: no visible global function definition for ‘naprint’
    print.lm.circular.cl: no visible global function definition for
     ‘printCoefmat’
    print.rao.spacing.test: no visible global function definition for
     ‘data’
    print.rao.spacing.test: no visible binding for global variable
     ‘rao.table’
    print.rao.test: no visible global function definition for ‘qchisq’
    print.summary.clm: no visible global function definition for ‘setNames’
    print.summary.clm: no visible global function definition for
     ‘printCoefmat’
    print.summary.clm: no visible global function definition for ‘naprint’
    print.summary.clm: no visible global function definition for ‘symnum’
    pwrappednormal : intDwrappednormalRad: no visible global function
     definition for ‘integrate’
    qvonmises : zeroPvonmisesRad: no visible global function definition for
     ‘integrate’
    qvonmises: no visible global function definition for ‘uniroot’
    qwrappednormal : zeroPwrappednormalRad: no visible global function
     definition for ‘integrate’
    qwrappednormal: no visible global function definition for ‘uniroot’
    rao.spacing.test: no visible global function definition for ‘na.omit’
    rao.test: no visible binding for global variable ‘na.omit’
    rayleigh.test: no visible global function definition for ‘na.omit’
    rose.diag: no visible global function definition for ‘na.omit’
    rose.diag.oldstyle: no visible global function definition for ‘na.omit’
    rstable: no visible global function definition for ‘rcauchy’
    rstable: no visible global function definition for ‘rnorm’
    rstable: no visible global function definition for ‘rexp’
    summary.clm: no visible global function definition for ‘coef’
    summary.clm: no visible global function definition for ‘pt’
    summary.clm: no visible global function definition for ‘residuals’
    ticks.circular: no visible global function definition for ‘par’
    totalvariation.circular: no visible global function definition for
     ‘approxfun’
    totalvariation.circular: no visible global function definition for
     ‘integrate’
    trigonometric.moment: no visible global function definition for
     ‘na.omit’
    wallraff.test.default: no visible global function definition for
     ‘complete.cases’
    wallraff.test.formula: no visible global function definition for
     ‘model.frame’
    wallraff.test.formula: no visible global function definition for
     ‘as.formula’
    watson.test: no visible global function definition for ‘na.omit’
    watson.two.test: no visible global function definition for ‘na.omit’
    watson.wheeler.test.default: no visible global function definition for
     ‘complete.cases’
    watson.wheeler.test.formula: no visible global function definition for
     ‘model.frame’
    watson.wheeler.test.formula: no visible global function definition for
     ‘as.formula’
    watson.williams.test.default: no visible global function definition for
     ‘complete.cases’
    watson.williams.test.formula: no visible global function definition for
     ‘model.frame’
    watson.williams.test.formula: no visible global function definition for
     ‘as.formula’
    weights.clm: no visible global function definition for ‘naresid’
    windrose : circles: no visible global function definition for ‘polygon’
    windrose : circles: no visible global function definition for ‘lines’
    windrose: no visible global function definition for ‘complete.cases’
    windrose: no visible global function definition for ‘par’
    windrose: no visible global function definition for ‘plot’
    windrose: no visible global function definition for ‘hist.default’
    windrose: no visible global function definition for ‘lines’
    windrose: no visible global function definition for ‘polygon’
    windrose: no visible global function definition for ‘text’
    Undefined global functions or variables:
     .getXlevels abline approxfun arrows as.dendrogram as.formula axTicks
     coef complete.cases data dnorm formula frame hclust hist.default hsv
     image integrate is.empty.model kruskal.test layout lines
     lines.default lm lm.wfit median.default model.extract model.frame
     model.matrix model.offset model.response model.weights mtext na.omit
     naprint naresid optim optimize order.dendrogram par pchisq pf plot
     plot.default pnorm points points.default polygon printCoefmat pt
     qchisq qf qnorm rao.table rcauchy reorder residuals rexp rnorm
     setNames symnum text text.default title uniroot
    Consider adding
     importFrom("grDevices", "hsv")
     importFrom("graphics", "abline", "arrows", "axTicks", "frame",
     "hist.default", "image", "layout", "lines", "lines.default",
     "mtext", "par", "plot", "plot.default", "points",
     "points.default", "polygon", "text", "text.default",
     "title")
     importFrom("stats", ".getXlevels", "approxfun", "as.dendrogram",
     "as.formula", "coef", "complete.cases", "dnorm", "formula",
     "hclust", "integrate", "is.empty.model", "kruskal.test",
     "lm", "lm.wfit", "median.default", "model.extract",
     "model.frame", "model.matrix", "model.offset",
     "model.response", "model.weights", "na.omit", "naprint",
     "naresid", "optim", "optimize", "order.dendrogram",
     "pchisq", "pf", "pnorm", "printCoefmat", "pt", "qchisq",
     "qf", "qnorm", "rcauchy", "reorder", "residuals", "rexp",
     "rnorm", "setNames", "symnum", "uniroot")
     importFrom("utils", "data")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.4-7
Check: compiled code
Result: NOTE
    File ‘circular/libs/circular.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.4-7
Check: S3 generic/method consistency
Result: WARN
    median:
     function(x, na.rm, ...)
    median.circular:
     function(x, na.rm)
    
    median:
     function(x, na.rm, ...)
    median.circular:
     function(x, na.rm)
    
    See section 'Generic functions and methods' in the 'Writing R
    Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64