CRAN Package Check Results for Package clValid

Last updated on 2015-05-24 03:47:56.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.6-6 0.95 96.84 97.79 NOTE
r-devel-linux-x86_64-debian-gcc 0.6-6 1.20 114.40 115.59 NOTE
r-devel-linux-x86_64-fedora-clang 0.6-6 205.55 NOTE
r-devel-linux-x86_64-fedora-gcc 0.6-6 199.41 NOTE
r-devel-osx-x86_64-clang 0.6-6 159.79 NOTE
r-devel-windows-ix86+x86_64 0.6-6 4.00 63.00 67.00 NOTE
r-patched-linux-x86_64 0.6-6 0.94 95.41 96.34 NOTE
r-patched-solaris-sparc 0.6-6 1135.40 NOTE
r-patched-solaris-x86 0.6-6 217.70 NOTE
r-release-linux-x86_64 0.6-6 0.95 94.90 95.85 NOTE
r-release-osx-x86_64-mavericks 0.6-6 NOTE
r-release-osx-x86_64-snowleopard 0.6-6 NOTE
r-release-windows-ix86+x86_64 0.6-6 4.00 54.00 58.00 NOTE
r-oldrel-windows-ix86+x86_64 0.6-6 4.00 63.00 67.00 NOTE

Check Details

Version: 0.6-6
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘Biobase’ ‘GO.db’ ‘annotate’ ‘kohonen’ ‘mclust’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.6-6
Check: R code for possible problems
Result: NOTE
    BHI: no visible global function definition for ‘getGO’
    BHI: no visible binding for global variable ‘dropECode’
    BSI: no visible global function definition for ‘getGO’
    BSI: no visible binding for global variable ‘dropECode’
    vClusters: no visible global function definition for ‘Mclust’
    vClusters: no visible global function definition for ‘som’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.6-6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'moe430a.db'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: IRanges
    Loading required package: XML
    
    Attaching package: 'XML'
    
    The following object is masked from 'package:tools':
    
     toHTML
    
    Loading required package: GO.db
    Loading required package: DBI
    
    Loading required package: moe430a.db
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'moe430a.db'
    Loading required package: RankAggreg
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "clValid.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'clValid.tex' failed
    
    LaTeX errors:
    !pdfTeX error: pdflatex.EXE (file d:/RCompile/CRANpkg/local/3.3/clValid.Rcheck/
    vign_test/clValid/vignettes/clValid-022.pdf): PDF inclusion: required page does
     not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.6-6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘annotate’ ‘GO.db’ ‘moe430a.db’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
     eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
     mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
     unique, unlist, unsplit
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required package: annotate
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘annotate’
    Loading required package: RankAggreg
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'clValid.tex' failed.
    LaTeX errors:
    !pdfTeX error: pdflatex (file ./clValid-022.pdf): PDF inclusion: required page
    does not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.6-6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘Biobase’ ‘annotate’ ‘GO.db’ ‘moe430a.db’
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.6-6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘Biobase’
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: cluster
    Read 7 items
    Loading required package: Biobase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘Biobase’
    Loading required package: RankAggreg
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'clValid.tex' failed.
    LaTeX errors:
    !pdfTeX error: pdflatex (file ./clValid-022.pdf): PDF inclusion: required page
    does not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: IRanges
    Loading required package: XML
    
    Attaching package: 'XML'
    
    The following object is masked from 'package:tools':
    
     toHTML
    
    Loading required package: GO.db
    Loading required package: DBI
    
    Loading required package: moe430a.db
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'moe430a.db'
    Loading required package: RankAggreg
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "clValid.tex" --max-iterations=20 -I "D:/RCompile/recent/R-3.2.0/share/texmf/tex/latex" -I "D:/RCompile/recent/R-3.2.0/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'clValid.tex' failed
    
    LaTeX errors:
    !pdfTeX error: pdflatex.EXE (file d:/RCompile/CRANpkg/local/3.2/clValid.Rcheck/
    vign_test/clValid/vignettes/clValid-022.pdf): PDF inclusion: required page does
     not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     toHTML
    
    
    Attaching package: 'annotate'
    
    The following object is masked from 'package:GenomeInfoDb':
    
     organism
    
    Loading required package: GO.db
    Loading required package: DBI
    
    Loading required package: moe430a.db
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'moe430a.db'
    Loading required package: RankAggreg
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "clValid.tex" --max-iterations=20 -I "D:/Rcompile/recent/R-3.1.3/share/texmf/tex/latex" -I "D:/Rcompile/recent/R-3.1.3/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'clValid.tex' failed
    
    LaTeX errors:
    !pdfTeX error: pdflatex.EXE (file d:/RCompile/CRANpkg/local/3.1/clValid.Rcheck/
    vign_test/clValid/vignettes/clValid-022.pdf): PDF inclusion: required page does
     not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64