CRAN Package Check Results for Package clValid

Last updated on 2014-04-24 07:52:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.6-6 1.21 98.92 100.13 OK
r-devel-linux-x86_64-debian-gcc 0.6-6 1.14 98.95 100.09 OK
r-devel-linux-x86_64-fedora-clang 0.6-6 221.60 OK
r-devel-linux-x86_64-fedora-gcc 0.6-6 219.56 OK
r-devel-osx-x86_64-clang 0.6-6 150.90 OK
r-devel-osx-x86_64-gcc 0.6-6 WARN
r-devel-windows-ix86+x86_64 0.6-6 4.00 68.00 72.00 NOTE
r-patched-linux-x86_64 0.6-6 1.17 99.72 100.89 OK
r-patched-solaris-sparc 0.6-6 1110.00 OK
r-patched-solaris-x86 0.6-6 234.80 OK
r-release-linux-ix86 0.6-6 2.00 151.00 153.00 OK
r-release-linux-x86_64 0.6-6 1.16 104.51 105.67 OK
r-release-osx-x86_64-mavericks 0.6-6 WARN
r-release-osx-x86_64-snowleopard 0.6-6 NOTE
r-release-windows-ix86+x86_64 0.6-6 4.00 68.00 72.00 NOTE
r-oldrel-windows-ix86+x86_64 0.6-6 4.00 66.00 70.00 NOTE

Check Details

Version: 0.6-6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘Biobase’ ‘annotate’ ‘GO.db’ ‘moe430a.db’ ‘RankAggreg’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.6-6
Check: R code for possible problems
Result: NOTE
    BHI: no visible global function definition for ‘getGO’
    BHI: no visible binding for global variable ‘dropECode’
    BSI: no visible global function definition for ‘getGO’
    BSI: no visible binding for global variable ‘dropECode’
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.6-6
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘Biobase’, ‘RankAggreg’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.6-6
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘clValid.Rnw’
     ...
    + CEW .... [TRUNCATED]
    Loading required package: RankAggreg
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘RankAggreg’
    
    > plot(CEWS)
    
     When sourcing ‘clValid.R’:
    Error: error in evaluating the argument 'x' in selecting a method for function 'plot': Error: object 'CEWS' not found
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: cluster
    Read 7 items
    Loading required package: Biobase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘Biobase’
    Loading required package: RankAggreg
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘RankAggreg’
    
    Error: processing vignette 'clValid.Rnw' failed with diagnostics:
     chunk 28 (label = RankAggFig)
    Error in plot(CEWS) :
     error in evaluating the argument 'x' in selecting a method for function 'plot': Error: object 'CEWS' not found
    
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 0.6-6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'moe430a.db'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: XML
    
    Attaching package: 'XML'
    
    The following object is masked from 'package:tools':
    
     toHTML
    
    Loading required package: GO.db
    Loading required package: DBI
    
    Loading required package: moe430a.db
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'moe430a.db'
    Loading required package: RankAggreg
    Loading required package: gtools
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "clValid.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'clValid.tex' failed
    
    LaTeX errors:
    !pdfTeX error: pdflatex.EXE (file d:/RCompile/CRANpkg/local/3.2/clValid.Rcheck/
    vign_test/clValid/vignettes/clValid-022.pdf): PDF inclusion: required page does
     not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.6-6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘Biobase’ ‘annotate’ ‘GO.db’ ‘moe430a.db’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.6-6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘Biobase’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: cluster
    Read 7 items
    Loading required package: Biobase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘Biobase’
    Loading required package: RankAggreg
    Loading required package: gtools
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'clValid.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `relsize.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    _test/clValid/vignettes/clValid.tex:29: ==> Fatal error occurred, no output PD
    F file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.6-6
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    17c9d15/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: cluster
    Read 7 items
    Loading required package: Biobase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘Biobase’
    Loading required package: RankAggreg
    Loading required package: gtools
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'clValid.tex' failed.
    LaTeX errors:
    !pdfTeX error: pdflatex (file ./clValid-022.pdf): PDF inclusion: required page
    does not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required package: annotate
    Loading required package: AnnotationDbi
    Loading required package: GenomeInfoDb
    Loading required package: GO.db
    Loading required package: DBI
    
    Loading required package: moe430a.db
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'moe430a.db'
    Loading required package: RankAggreg
    Loading required package: gtools
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "clValid.tex" --max-iterations=20 -I "D:/RCompile/recent/R-3.1.0/share/texmf/tex/latex" -I "D:/RCompile/recent/R-3.1.0/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'clValid.tex' failed
    
    LaTeX errors:
    !pdfTeX error: pdflatex.EXE (file d:/RCompile/CRANpkg/local/3.1/clValid.Rcheck/
    vign_test/clValid/vignettes/clValid-022.pdf): PDF inclusion: required page does
     not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.6-6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required package: annotate
    Loading required package: AnnotationDbi
    Loading required package: GO.db
    Loading required package: DBI
    
    Loading required package: moe430a.db
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'moe430a.db'
    Loading required package: RankAggreg
    Loading required package: gtools
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "clValid.tex" -I "D:/Rcompile/recent/R-3.0.3/share/texmf/tex/latex" -I "D:/Rcompile/recent/R-3.0.3/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'clValid.tex' failed
    
    LaTeX errors:
    !pdfTeX error: pdflatex.EXE (file d:/RCompile/CRANpkg/local/3.0/clValid.Rcheck/
    vign_test/clValid/vignettes/clValid-022.pdf): PDF inclusion: required page does
     not exist <0>
     ==> Fatal error occurred, no output PDF file produced!
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64